Carassius auratus (goldfish): 113038603
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Entry
113038603 CDS
T07313
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113038603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caua03021
]
113038603
03019 Messenger RNA biogenesis [BR:
caua03019
]
113038603
Transcription machinery [BR:
caua03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113038603
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
113038603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
DUF6980
Motif
Other DBs
NCBI-GeneID:
113038603
NCBI-ProteinID:
XP_026051944
Ensembl:
ENSCARG00000070130
UniProt:
A0A6P6IW24
LinkDB
All DBs
Position
21:complement(14257727..14266933)
Genome browser
AA seq
1458 aa
AA seq
DB search
MSDEGAREDACREYQSSLEDLTFNSKPHINMLTILAEENIQFTKDIVAIIEAQIAKAPPG
EKLPVLYLVDSIVKNVGGEYLEVFAKNLVNSFICVFEKVDEATRKSLFKLRSTWDEIFPL
KKLYAVDVRVNSIDPAWPIKPLPPNVNASIHVNPKFLKPTEETSPKPPAPQPPAPSLTQE
QLIRQQLLAKQKQLLELQQKKIELELEQTKAQLASSPAISSNHHAGAPARFNISQVTHTV
PSTQTKPWLPAPSEKIATRDPRINRLGTTVNAKEQVMHKKESRVTPTFQSTSEKRGQVTA
ERQSKLDKLRIPKKDNSAVEEKPKSKLVSPSGKGMLVRPRGLESDHSKTPEVSKKDPRLH
KQMHDRTDSKDEDIREKKKSSEKKDRDEGVKNMDHQKFSSTRGKLINGSLNKHERLETFL
KQEIKVNKANVRKRSRSRSHSPPLHSPKRKERRSSPKRKTRSITPPPKSGKARISKHSHN
EDAFPQSSLRDERSAKKSAPEPRRSKRPLDRAADQKDGPQLRISPAEHKDTKDSKRWRSG
WEENKHPKQSDSDLSHGRLGNQRHKTWNTNQRPPTSRIPKHHRLSVDSNIQIPEALNSAS
KRDLLRKASKRHADGEISNDEFLNVAHQINQLFQYQEERQRSDSWDESCDEGLYLSKKKQ
GAMSVAELSYLEHKSKLRRTQLQRPVQKEGQSPLDEMFYQPQHEMTEQYSESSGVHKMSG
DAVKPDREDPRRTNRPPSCTSSTFRNSPSPVKLEGTCGKSTGLPFERSSSPVEMDQPGDI
SPRFESPNSVHSGTGPDDGPINLEGLSMQDNFLELGRSGRNLDESPGNTPTHSSEGSMAQ
VNPSRHEGPNISQRFDRYKSSQAPFDGPPSHMREPRLDGPPRPYAPPPRYEGSTGGFDGS
GGPVRFPGHRFDAPHRFERFPKAHERPVRFNNPAVSHRPVRYTEPHNMVRFDPQAPIHYD
HPMHQNRFVNPPRFDNPHMQHGPQGYEEPRFPARLMNYDKPQGAVRFDGPSGGMRFENPV
QPEPLRFDAPPVMPRYDPQGPPTYCGPNIPNQLRPQEPTMYDQTQGQAPVINPAVLPPNF
NMPPMNTYGGPAQQFTMQPNVSQASNFSVTVPTSSDFQGSFRPAPFPGPGVGNVPQPIMG
AQPFMPPNQVSFLPGSQFQQPEPEPLRQIDVNDLLSKLIFTGIIKPAQTDSTTESTSTNQ
TISVPEEEEEEEQEEDESVPDLTGFVLEDMKLRHDSIITKLYTGIQCYSCGMRFTASQTD
VYADHLDWHYRQNRSEKDISKKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEV
VQKTQEAAKEKEFQSVKAAADVVHELCEICQEQFEMYWEEEEEEWHLKNAIRVDEKTYHP
SCYEDYKNTSSFVDCTPSPNKMLTENPLTAFIKQEQGDDASCSSIKEEPSEDNTDAPMVK
EEVQVKLEGESQTSAIIF
NT seq
4377 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgaaggcgcgagggaggacgcgtgccgcgaatatcagtcctcgctggaagat
ctgactttcaacagcaaaccgcacatcaacatgctcaccattctagccgaagaaaacatc
cagttcaccaaggatatcgtcgcaataattgaagcacaaattgccaaggcacctcctggt
gagaagctcccagttttgtacttagtggattccatagtgaagaatgttggaggggaatac
cttgaagtgtttgctaagaacctagtcaattcctttatttgtgtatttgagaaggtggat
gaggccactagaaaaagtctcttcaaactgcgttccacatgggatgaaattttccccttg
aagaaactatatgcggtagatgtgcgtgtgaactcaatagatcctgcctggcctataaaa
ccattgccaccaaatgtgaatgccagcatacatgtcaaccccaaatttttaaaaccgact
gaagaaacctctccaaagcctcctgcaccacaacctccagctccgagcttgacacaagaa
caattgataaggcaacagttgcttgccaagcaaaagcagttgttagaacttcagcaaaag
aagatagagcttgagcttgaacaaacgaaagctcagttggcttccagtcctgctatttct
tcaaaccaccatgccggtgctcctgcacgtttcaatatctcacaagtcactcatacagtt
ccttcaacacagaccaaaccttggcttccagcaccatcagaaaaaatagcaaccagagat
cctagaataaacaggcttggtacaactgtaaatgcaaaggaacaagtgatgcataagaag
gagagtcgggtaacgccaacctttcagtctacatcagaaaaaagaggacaagtcacagct
gaaagacagagtaagttggataagttgaggattcctaaaaaggataactctgcagttgag
gaaaagcctaaatccaagttggtgtcaccatctggaaaaggtatgcttgtcagacccaga
ggattggagtctgatcattcaaaaactcctgaagtaagtaagaaggacccaaggctacat
aagcagatgcatgacaggacagattcaaaagatgaagatatccgagagaagaaaaaaagt
tcagagaagaaagaccgagatgaaggtgtcaaaaacatggatcatcagaagttcagcagc
accaggggcaagcttataaacggttctctaaacaagcatgaaagacttgagacatttctg
aaacaagaaattaaggtgaacaaagcaaatgttagaaaaaggtctcggtcaagatcacat
tcacccccattgcattctcccaaaagaaaagagaggcgatcatctccaaagaggaaaacc
aggagtattactccaccccccaagtctggaaaggctaggataagtaaacattcacataat
gaggatgcttttccacagtcaagtcttagagatgagcgaagtgccaagaaaagtgcccca
gaaccaaggcgatcaaaaaggccacttgatagagctgctgatcaaaaagatggaccacag
ctgagaatttctcctgcagagcataaagacacaaaagatagcaagagatggaggagtgga
tgggaggagaataaacatcccaaacagtcagattcagatctctcacacggacgactaggc
aaccagagacacaagacttggaacactaatcaaagaccacccacatctcgtatacctaaa
caccatcgtttgagtgttgatagcaacatacaaataccagaagcacttaattctgcaagt
aaacgggaccttttaagaaaggctagcaaaagacatgctgatggtgaaatatccaatgac
gaattcctcaatgtagcccatcaaataaaccaactttttcagtatcaagaggaaagacag
cgatctgattcttgggatgaatcgtgtgatgagggattatatctatcaaaaaagaaacaa
ggagccatgtctgttgcagagctttcttatcttgagcataagtctaagttgagaagaaca
cagcttcagcgtccagtgcaaaaagagggccagtcacctttggatgaaatgttctatcag
cctcaacatgaaatgacagaacaatacagtgaaagctcaggagtgcataaaatgtctggt
gatgccgtaaagcctgaccgtgaagatcctagaagaaccaacaggcctccatcatgtaca
agttccacattcagaaattcaccaagtccagtcaagttagaagggacctgtgggaaatcc
acaggactgccatttgaacggtcatcatctccagttgaaatggatcaacctggagacatc
agcccacgttttgaaagtcccaacagtgtgcactctggtacaggtcccgatgatggtcct
ataaatttagagggtctatcaatgcaagataatttcttggaactgggaagaagtggacga
aaccttgatgaatctcctgggaatacaccaacgcactcctcagaaggatctatggcacag
gtgaacccatcacggcatgagggaccaaatatttctcaacgatttgatagatataagagc
tctcaagctccctttgatgggccacctagccacatgagagagccaaggttagatggtcct
ccaagaccttatgctcctcctcctcggtatgaaggcagtactgggggatttgatgggtct
ggtggacctgtaaggtttcctggacatcgctttgatgcccctcaccgttttgaaagattt
cccaaagcccatgaaagacctgtgagatttaacaacccagcagtatcacacaggccagtg
aggtacacagagcctcacaacatggtgagatttgatcctcaagccccaattcattatgac
cacccaatgcaccaaaacagatttgttaatccaccaaggtttgataatcctcacatgcaa
cacggcccccaaggatacgaggaaccacggttcccggctagactaatgaattatgataaa
ccgcagggtgcagttagatttgatggtccatcaggtgggatgcgctttgagaacccggtg
cagcctgaacccttgagatttgatgcaccgcctgtcatgccaagatatgacccacaaggt
cctccaacatactgcggtccaaatattccaaaccagctgagaccacaggagccaacaatg
tatgatcaaactcaaggtcaagctcctgtgataaaccctgctgttctacctcctaatttc
aacatgccacccatgaacacatatggtggcccagcccaacagtttaccatgcaaccaaat
gtttctcaagcatctaacttcagtgtgacagtccctacgtcatcggatttccagggttca
tttagacctgccccatttcctggtccaggtgttgggaatgttcctcagcctattatggga
gctcaacccttcatgccaccaaaccaagtatctttcctgcctggttcccagtttcagcag
cctgagcctgagccattgaggcaaatagatgtgaacgatttgttgtcaaaacttatattc
actggaataattaaacctgcacaaacagactcgaccactgagtctacatcaacaaatcag
actatatctgtgcctgaagaggaagaggaggaggaacaagaggaagatgaaagtgtccca
gatctgactggctttgttttggaggacatgaaactgagacacgacagcattatcaccaaa
ctgtatacaggaatccagtgctattcctgcggcatgcgttttacagcatctcagacagat
gtgtatgcagatcatttggactggcactacaggcagaatcgttcagagaaggacatcagt
aagaaagttacacaccgtcggtggtactacagtctgacggattggattgaatttgaggaa
atcgctgatcttgaggagagggcaaagagtcagttctttgaaaaagttcatgaagaggtt
gtacagaaaactcaggaagcagccaaagagaaagagttccagagcgtaaaggctgcagca
gatgtcgttcacgagctgtgtgagatttgccaggagcagtttgagatgtactgggaggag
gaagaggaagagtggcatctaaagaatgccatcagagtcgatgaaaagacataccatccc
tcatgttacgaagactacaaaaatacatcctcctttgtggactgcacaccctcacccaat
aaaatgcttacagaaaaccctttaacagctttcataaaacaagagcagggtgatgatgca
tcatgctccagtattaaagaagagccctctgaggacaatacagacgcaccaatggtaaaa
gaggaggttcaggttaagttagaaggagaatcacaaaccagtgcaattattttctaa
DBGET
integrated database retrieval system
