Carassius auratus (goldfish): 113038687
Help
Entry
113038687 CDS
T07313
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03320
PPAR signaling pathway
caua04148
Efferocytosis
caua04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
113038687
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
113038687
03320 PPAR signaling pathway
113038687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
caua03000
]
113038687
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
caua03310
]
113038687
Transcription factors [BR:
caua03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
113038687
Nuclear receptors [BR:
caua03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
113038687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
113038687
NCBI-ProteinID:
XP_026052077
Ensembl:
ENSCARG00000010953
UniProt:
A0A6P6J0C2
LinkDB
All DBs
Position
21:complement(15654311..15804353)
Genome browser
AA seq
524 aa
AA seq
DB search
MDPFCLDMHMGFLKPQCSIPPPPQRGRAEACTCFSGMCALHQRRLSTDLLIPRTPQCDDP
FRRTPFLKYKDSSGQVTASPLSSPTSHRGMHPSLLSPTSLGPSGSLHSPISSLNSPMNGL
GSPFSVISSPMGPHSMASPGMGYGPSISPQLNSPMNSVSSSEDIKPPLGINGVMKVPAQP
SGTPLSLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKDCIIDKRQ
RNRCQYCRYQKCLAMGMKREVLLHTAVQEERQRAKERNENEVESTSSANEDMPVEKILEA
ELAVEPKTETYIETNVPMPSNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQV
ILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR
DMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKQKYPEQPGRFAKL
LLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggatcccttctgccttgatatgcacatggggttcctgaaaccccagtgctcgatacca
ccgccacctcagagaggacgagcagaagcatgcacgtgtttcagcggaatgtgtgccctt
catcaacgcaggctttctacagacttgttaataccaaggaccccccaatgtgatgatccc
tttagacggactcccttcctaaaatataaagactcctcgggacaggtgacagcctctcct
cttagctcacccacgtcccaccgggggatgcatccgtcactgctgagcccgacttcattg
ggcccctcggggtctctgcactcccccatcagctctctgaactcccccatgaacggcctt
ggctctcccttttctgtcatcagctcgcccatggggccacattccatggcgtcacccggg
atgggctacggccccagcatcagcccacagttgaattcgcccatgaactctgtcagcagc
tcagaagatatcaagccgcccctgggcatcaacggtgtgatgaaggtgccagcccagccc
tcgggcacccctctttccctcaccaaacacatctgtgccatctgtggcgaccgctcctca
ggtaaacactacggtgtgtacagctgcgaggggtgcaagggtttcttcaagaggactgtg
cgtaaggacctgacctacacttgtcgagacagcaaggactgtattatcgacaaacgccag
cgcaaccgctgccagtactgccgctatcagaagtgtttggccatgggcatgaagagagaa
gtattattacatacagccgtccaggaggagcgccagcgagccaaggaacgcaacgagaac
gaggtggagtcgaccagcagtgcaaacgaagacatgcctgtggagaagatcctggaggcg
gagcttgctgtggagcccaaaacggagacttacattgaaaccaatgtaccgatgccctca
aattcacccaatgatccagtcacgaacatctgtcaggccgcagacaagcagctcttcact
ctcgtggaatgggccaagaggatcccgcatttttccgagctcccgctggacgaccaggtc
attcttctacgagcaggatggaatgagctcctcattgcgtcattttcacaccgttcaata
gcagtgaaagatgggatactgttggccacaggactgcacgtgcaccggaacagcgcccac
agtgccggagtaggggccatatttgacagggtgctgacggagttggtgtcaaagatgaga
gacatgcagatggataaaacagagctaggatgccttcgagccatcgtcctcttcaatcca
gactccaaaggcctgtcaaacccaggtgaggtggaggcgctgagagagaaggtctatgcc
tctctggaagcctactgcaaacagaaataccctgaacaacctggaaggtttgctaagctg
ttgctgcggctccctgccctgcgttcaattggactgaagtgtttggagcatctgttcttc
ttcaagctcataggggacactcccatcgataccttcctcatggagatgctagaggcgccc
caccaaatgacataa
DBGET
integrated database retrieval system
