Carassius auratus (goldfish): 113039039
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Entry
113039039 CDS
T07313
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
caua
Carassius auratus (goldfish)
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caua03021
]
113039039
Enzymes [BR:
caua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
113039039
5.6.2.5 RNA 5'-3' helicase
113039039
Transcription machinery [BR:
caua03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113039039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
UvrD-helicase
AAA_30
Viral_helicase1
AAA_22
AAA_16
nSTAND3
Helicase_RecD
GLF
Motif
Other DBs
NCBI-GeneID:
113039039
NCBI-ProteinID:
XP_026052693
Ensembl:
ENSCARG00000008771
UniProt:
A0A6P6IZG5
LinkDB
All DBs
Position
21:complement(23979645..24000380)
Genome browser
AA seq
2288 aa
AA seq
DB search
MEKCLWCTTSLEAEGDAAIVAMLRRYSSGRLSEREMDSLNEDLGCCLECVVEYHRARDKV
PHLHKRLWEMEKARLVRLLGTILDKELEEDDIFIIEDDRVEPVTKILPAEFHDRLRSPLF
EVLKYPYLLCYRDLCDLVVKALCKLQDMKQSLTVFEKYQGIYLFLVHPNEQVRRWAIDTA
KTMKSVDRDSYYDLQEIFSCMFNVIEPGISLDFPDVDQESYSRGTIKTLPSHLYDSQNKK
NCWLGICMLLTQLSAEAMDSLFMGQFNIPLCILRTMDGLKNEDNPASDPFWPALHCFMVI
LDRLGSKIWGQVDPNTAFQTITGAASYVAEIRNIRQKTMGGMFKVEPEYDDNMVTCSQMV
YNCYASEKPNHASGLSSNSGVSSNYMIYEDMQSLVTVLDSEMGQSMRVYGSTFLWFIPFV
RSIMELSELNASYISEVIHYLCDKIRENRHMLTGQTIVYDKVSELFTRILIQIVELHSTE
GRMGILSRCAHKWVGEIVLCIIQSDETHGPPDRMGGIHGVSSTSYNLGIVRKLPASGGGI
GAIISDCVTLIRRLLKDGKRRSVPSAAHFLSLLNNQLRGVTNKRWDLTRSESDELQKCLL
RVVRSMPERSTSSPSVVPPPCGPSVEATTNNVISRNSVATLNQQPYEHQEAGPSRAGDES
SFIKKESIWNYKNWDLDEDFCSGLEVIIKAKKETLDPVSISQLSPVVQLERVKPDINQSL
KSAKEACGFGAAEDEEDDDEPLDIKLVRLTKSIHNVESGDSEDNNNAVEKIGNRFMGASK
ENVESSTIVISDDDSDNDERPNDILRSPKVCVLSESPGRDYDDLSESQVFEFETQQYVAS
AWDDSGFDASDLTKKPESDQLLKPQVDETPREASPSSSETELIPDEDIERACQQAEDKIR
EQQQPQEPVDSFATSLSKASSTAESWDKFAKPKPVKSTKTTPSEKKQPKKPLIIDALAQK
SRRHSWKRSSTSQDVEEPSSSTTLCSPSSSSCSSVSSPYFSAPSSSNTPKIVPPKKVRKV
AEPESTAERLGLKKKERKAFDLSQRSLDGVAKLRCHGQKVQVEPQQKKRRVNRANKSSPQ
NHIVKSNKKLLGSQDIQFFRLSREKQANQRPATGVITSTLAPKPADINQPGEMHLPKPTF
ASSEAGDIFPCPQPDSSFQRDNENAASGTNSAGDGAGNNKCVEPEYFQASETADANMENE
KPAQEDDEEWMFLTQMEPTDMELCSQMEQFEEENGEELFLTQRDPIDMDIDTGSESDAPG
PTLTPKPIQTPIGGNDDHLFVKPGMSPISQKKAKPSTTKIYTPSSRSASLVLEMEKEAKP
PPAANVAKAKIPRLPPAVPPPKTFQPLHPPQLPMQLPSRHAPYAPELATSSRRSSNSEPP
SYKVYQRPEAPVYNPGPTVDQSQTFDLSILTQAILKWEYRMLDNYKSFGSPHDLCQLPLQ
KVPVQFSSYLEYFNTLYPLLLINAFEEMASEWLKEGRVKLNLTFQGIEYSNRTASASFTA
NISQETDMKQLYPKEDDLVLLWLPDNTGSYAHDEPNFHETHPHFGYVSRSNVSNRSSGSR
PILNLTIQTRSNISSGNSQPVLCEVIGSLISIFREFRALCLLRNGPMLRPLLAPHASFFM
HTVDSPPDLDLPEFNRDQARAIACGLAMVKRTEKTPKFLLIHGPPGTGKSKTIGGLLYKL
LSSGINSAAPSGNIHAKSRRTRVLLCAPSNAAIDSLMKKVILIFKEKCRNINAPQGNCGD
INLVRLGSERTISKSLKPFSLDHQTKARAQRAQQTAEADIHKRKEQLEQIIENLSQRCAK
ANKDSFEFKTLMEEKMQRLKEREGLGRQIKECRMRRQESQAVVLQNAHVICCTLSTSGSI
VLENAFRRLGHEPFSCVIIDEASQSKESETLIPMLYRSPAVILVGDPNQLPPTVVSQKAK
EFGFDQSLMARLCKSLYMSNPQLSPIVLLGVQYRMHPDICEFPSKYIYNSALKDDCETAQ
KRCSLSWPFKPYKVFDVTDGIEKKERDSFSNHKEVKLVLLLLKLLGEKQSVRVGVITPYN
AQKQRILEAIRGSGIDNKHLQVEVNTVDGFQGREMDCIIVSCVRASSETGSIGFVGNRQR
MNVTITRAKFSLFILGHLRTLREQSDWGALIEDASIRKTIIKTMQKQFERDVRQILKPER
EPPTRSLSYPPIGIPSTVTSPVTYAPVETDPAPAPHLQHDTSSAPMPRLIPLECPNNPRM
SDRPTDPRFAERRPIREQGPDRDGRGLPESRRSTNRANSYEADSRSTGQSSRYSSRHSSS
SPSRRHRR
NT seq
6867 nt
NT seq
+upstream
nt +downstream
nt
atggagaagtgtctgtggtgcaccacctccctggaggcggagggtgatgcagcgatagtc
gccatgctgcgtcgctacagctcaggacgtctgtctgagagagagatggactctctgaac
gaagacctcggctgctgtctggagtgtgtggtggagtaccatcgagccagagacaaggtc
cctcatctgcacaagcgtttgtgggaaatggagaaggctcgactcgtgcgtttgttggga
accatcctggacaaggagctggaggaggacgatatctttattatcgaagatgatcgcgtg
gagccggtgacgaagatcttgcctgcagaatttcacgaccgtctccgttctcctctgttt
gaagttctgaagtatccgtacttactttgctaccgtgatctgtgtgatttggtggtaaag
gccttgtgtaagttgcaggatatgaagcagtctttgactgtgtttgagaagtatcaagga
atatatctgtttctcgttcatcccaacgagcaggtgcgccgctgggcaatcgatacagca
aagaccatgaagagtgtggatagggactcctactatgaccttcaagagattttctcctgc
atgttcaatgtcatcgaacctggaatatctttggactttccagatgtggatcaagagtct
tattcaaggggcaccataaaaacgctcccctctcacctctatgactcgcaaaacaagaag
aactgctggctaggtatctgtatgttactaacgcagctcagcgcggaggcaatggactct
ctgttcatgggacagtttaacatcccgctttgcatactccgcacaatggatgggttgaaa
aatgaggataacccagcttctgacccattctggccagccctccactgttttatggtaatt
ctggaccgacttggttctaagatctggggtcaggttgaccctaatacagcgttccagaca
atcaccggagctgccagctatgttgcggaaattagaaacatccggcaaaagaccatgggc
ggtatgtttaaagtggaacctgaatatgatgacaatatggtgacctgcagtcagatggtg
tacaactgttatgcctcagaaaaaccaaaccatgcatctggtttgtcgtccaacagtggg
gtttcaagcaactatatgatctatgaggatatgcagtccctggtcacagtgcttgattct
gaaatgggccagagcatgcgtgtatacggaagcacttttctgtggttcattccatttgtt
cgttccataatggaactttcagagctcaatgcttcctatattagtgaagtcatccactat
ctttgtgataagatacgagaaaatcggcacatgctaaccggacagacgattgtgtacgat
aaagtgtccgagttattcactcgtatccttattcaaattgttgagctacactctactgaa
ggacggatgggtatactttctcgctgtgcccacaagtgggttggggagattgtcttgtgc
atcatccaatcagatgaaacacatggaccaccagacaggatgggtgggattcacggagtc
agttcaacctcatacaaccttgggatagttcgaaaactgcctgcatctggaggaggcatt
ggtgctataatttctgactgcgtgacactgattcgacggctactgaaagacgggaaaagg
agatctgtcccaagcgcggcccactttttgagtttgctgaacaatcagttgcgtggagtt
acaaacaaacgatgggatttaacacgttctgaatctgatgagcttcagaagtgtttgtta
agagttgtccggtcaatgccagaaagatctacttcttcaccttctgttgttccaccacca
tgtggaccatcagtggaggcaactacaaacaatgttatttccagaaattctgtggcaacc
ctaaatcagcaaccatatgagcaccaagaggcaggtccaagcagagcaggagatgaatct
agttttatcaaaaaggagtcaatttggaattataaaaattgggacttggatgaggatttc
tgcagcggtcttgaggttatcataaaggctaagaaggaaacccttgacccagtgtcaatt
tcacaactgagtccagttgttcagttggaacgcgttaaaccagatataaaccagtcctta
aaatcagctaaagaggcatgtggttttggagctgctgaggatgaggaggatgacgatgaa
ccccttgatatcaaactggttcgtctgacaaaatcaatccacaatgttgaatctggcgac
tccgaagataacaataatgctgttgaaaaaattggtaacaggttcatgggtgcttcaaag
gaaaatgtggagtctagtaccattgttatctctgatgatgattctgataatgatgaaagg
ccaaatgacatcctgaggtctccaaaagtttgtgtcctgtctgagagccccggtcgtgat
tatgatgatctcagtgaatcacaggtctttgagtttgagacccagcaatatgtggcatct
gcctgggatgattctggttttgatgcatcagacttgacaaagaagcccgaatcagaccaa
ctactcaaaccacaggtggatgaaactcctcgtgaagcatctccatcaagttcagagacc
gaacttattccagatgaagacattgagagggcttgtcagcaagcagaagataagatccga
gaacagcagcagccacaagagccagtggattcatttgcaacttcactgtccaaagcatcc
agtactgcagagagctgggataaatttgccaaaccaaaaccggttaaaagcacaaaaaca
actccatctgaaaagaaacagcctaaaaagccattgataattgatgcccttgctcaaaaa
agcagacgccactcctggaaacgcagctcaacatctcaggatgtagaggaaccatcctct
tcaactactctatgctcaccttcctcttcatcctgcagctctgtttcctctccttatttt
tctgcccccagttcaagtaatacccctaagatagttcccccaaagaaggtgcgtaaggtt
gctgagccagaatccacagcagagcgtttgggattaaaaaagaaggagaggaaagcattt
gatctttctcaacgctcgcttgatggtgttgctaaactgaggtgccatggtcagaaagtg
caggtagaaccacaacagaagaaaaggcgagtgaatcgagccaataagtcttctccacag
aatcatatcgtaaaaagcaacaagaaacttctgggatcacaagatattcagtttttcagg
cttagtcgtgagaagcaggcaaatcagaggccagcaacaggagtcatcacatcaacatta
gctcccaaaccagcagatatcaatcagccaggtgaaatgcacttaccgaaacctacattt
gcaagcagtgaggctggtgatatctttccttgtcctcagccagattccagctttcagcgg
gataatgaaaatgctgcatcaggaaccaattctgcaggagatggggctggaaataataag
tgtgtagaaccggagtacttccaagccagtgagactgctgatgccaacatggaaaacgaa
aaacctgctcaggaggatgatgaagaatggatgttcctcactcagatggaacccaccgac
atggaactgtgctctcaaatggagcagtttgaggaagaaaatggtgaagaactctttctt
acccagagagaccctatagacatggacattgatacaggcagtgagtcagatgccccaggg
ccaaccttgacccctaaacctattcagactcctattggtggaaatgatgatcatttgttt
gtgaagcctggcatgtcacctatatctcagaaaaaggccaaaccttctaccacaaaaata
tacacccccagctcccgcagtgcctcgcttgtccttgaaatggaaaaagaagccaagcct
cctcctgctgcgaatgttgctaaagcgaagattccccgactgcccccagcagtgccacct
ccaaaaacatttcaacctctccatcctccacaactcccaatgcaacttccttcacgacac
gctccatatgctcctgagttggccactagttctagaagaagctccaactcagagccacca
tcttacaaggtataccaaagacccgaggctccagtttacaatccaggacccacagtggat
caaagccagacgtttgacctttcaatcttgacccaagcaatccttaaatgggaatatagg
atgcttgacaattacaaatcatttgggagtccacatgatctgtgccaactaccgctgcag
aaagtgccagttcagttttctagctacttggagtacttcaacaccttgtaccccctgctg
ctaattaatgcatttgaagagatggcgagtgaatggctcaaagagggcagagttaagctt
aacctaacatttcagggaatagaatacagcaatcgcacagctagtgccagcttcacagca
aacatttctcaggaaactgatatgaaacaactgtacccaaaagaagatgacctggtgcta
ctttggttgcctgacaacactgggtcatatgcccatgatgaaccaaatttccatgaaacg
catcctcattttggttatgtgtctcggtccaatgtgtccaacagaagttcaggttccagg
ccaattctcaacttgacgattcagacacgtagtaatatatcttcagggaattcccaacct
gtgctctgtgaagttattggatcattgatcagcatattccgggagttccgtgcactgtgt
ttgctgcggaatggaccaatgttgcgacctctacttgctccacatgcatcttttttcatg
cacactgtggacagcccaccggacctggatttaccagagttcaacagggaccaagcaaga
gcaatagcttgtggtcttgccatggtaaagagaacagagaagaccccaaaatttctcctt
attcatggtcctccaggaaccgggaagagtaaaacaattggtggcctgttgtacaaacta
ctatcttcgggtattaacagtgctgctccttcggggaacattcatgccaagtctcgacgg
acacgagttcttctctgtgctccctctaatgctgccattgacagtctgatgaagaaggtc
attttgatatttaaagagaaatgccgaaacatcaacgcacctcaaggtaactgcggggat
ataaacctggtacgattgggaagtgaaagaaccatctcgaagtcattaaaacctttcagc
ctcgaccaccagactaaagctagagcacagcgagctcagcaaactgcagaagctgacata
cacaaacgcaaggagcaactggaacaaatcattgaaaatctctcccagcgatgtgcaaaa
gccaataaggattctttcgagttcaagacgttgatggaggagaagatgcagcgcctgaaa
gagagagaaggactgggtcggcagattaaagagtgtcgcatgaggcgacaggagagtcaa
gctgttgtgctgcaaaacgctcatgtgatctgctgcacgctcagcaccagtggaagtatt
gtcctcgagaatgccttccgtcgcctcggacatgaaccattcagctgcgtcatcattgat
gaggctagtcagtctaaagaatctgagactctgatccccatgctgtaccgaagtcctgct
gtaatcctcgtcggtgatcccaaccagcttccaccaacagttgtctctcagaaagcgaag
gagtttggcttcgaccagtctcttatggcaaggttatgcaaaagtctttatatgtcaaac
ccgcaactctctccaatcgtcctgctcggcgtgcagtaccgcatgcacccggacatctgc
gaattcccctccaagtacatctacaacagcgctctcaaggacgactgtgagacagctcag
aagcgctgttccctcagctggcccttcaagccctacaaagtgttcgacgtgacggatggg
atagagaagaaggagagagattcattttccaatcacaaagaagtcaagctggtcttgctg
ctgttgaagctgctgggtgagaagcagtcagtgcgagtgggcgtcatcacaccctacaac
gcccagaaacaacgcatactggaagccatcaggggttcaggcatcgacaacaagcatctt
caggttgaagtcaatacagtggatggctttcagggcagagaaatggactgcatcattgtg
tcttgtgtgagagccagcagtgaaacaggctccattgggtttgttggaaatcggcagaga
atgaatgtaaccatcaccagagccaaatttagtctctttattctgggacatttacgcaca
ctcagggaacaaagtgattggggagcattgattgaggacgctagtatacgtaaaacgatc
atcaaaactatgcaaaaacaatttgaaagagatgtcaggcagattcttaaaccagaacga
gagccgccgacccgcagtctctcttatcccccaattgggataccgagcactgtgacctca
cctgtgacatatgcacctgtggaaacagaccctgcccctgcgccccaccttcaacatgat
acgagcagtgcgccaatgccacggctaatacccttggaatgccctaataacccacggatg
agcgacaggcccacagacccacgttttgcagagcgccggccaatcagagaacagggacca
gacagagatgggcggggcttaccagagtcccgccgttctacaaacagggctaattcgtat
gaagccgattctagaagtactggccaatcttccagatactcttcaagacacagcagctct
tcaccatcaagacgacacaggagataa
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integrated database retrieval system
