Carassius auratus (goldfish): 113041100
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Entry
113041100 CDS
T07313
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B-like
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
caua
Carassius auratus (goldfish)
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
caua04121
]
113041100
Enzymes [BR:
caua01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113041100
Ubiquitin system [BR:
caua04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
113041100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-TRAF
Sina_ZnF
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
PDZ_Tricorn
Prok-RING_4
zf-rbx1
RING_XB3-XBAT31
U-box
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
113041100
NCBI-ProteinID:
XP_026055209
Ensembl:
ENSCARG00000012864
UniProt:
A0A6P6J4V9
LinkDB
All DBs
Position
23:5980590..6005276
Genome browser
AA seq
1030 aa
AA seq
DB search
MGFDLERFEGPVDPDLICKLCGKVLEDPLSTPCGHVFCAVCALQWLSKVSICPVQCQKIS
RKELNHVLPLKNLILKLNIRCDHRERGCNRVMKLQHLPEHAETCAFSPVRCGNEGCDAVL
SLKDVASHMREGCERRAVEVCEDGCGLALTLKERSEDHSCLQALKTHSGLLQSKVLSLEK
ELKRQSLSFSKRERSLLSKLSALHCELHITALTFQKKITEYKSRIDALSSSWMPLEKGEE
TRSLKVTLHRTSSGSLGFSIIGGRLCGETEQHGDFSDGIYVSKIVENGAADKAGLHVHDR
IVEVNGRSMSVATHDQAVEAFQTAKDPIEVQVLRRTAHNTCKTLDPARGMENSTQTNIML
KTSNHIETLAKLPLQESFRSPSQHQMARRDSPYPSDFHNGLQKDHESRALEYKVDLQRKT
TQDKLGLKLCYKTDDEKSAIYISEIDPEGIAAKDGRVQEGDQIIQINGMDIQSHEMAVTL
LTKVESKNVSLLVARPESQDVSWLENRNSLEDSHLGTLEQQLHQVKEFTTRMLQQSTNEE
DGGTTDTATLLSNQHEKDSGVGRTDESTRNDESSEQDIVGDDQNSLCDTLPESHRKYIYN
QETVESGNMHLSNDSFLSADNGDGGSFLGVPGTACEHFWKLLELKSLVNGNSPQGFLEHN
APLYEKGVNVDCDDREIRMLNEELLNIELECLSIIQAHRLQAEGGGQQAKKPSAKDFSEQ
VHQDLINNQVDNEGSTSAYNTGESCSSLHPTLEPDSLEFQRMVAGDMGKGSPMHRRNSTT
ACSKHNLSPIQEISPTKSLPGDPEVTNQGKRKSKKKNPRKSLLTSLRHSSYKNTYIPAHA
QHYQSYMQLIQQKSAVEYAQSQVSLASLCKNAETPPTESRLKTGWKVKIRSDGTRYITKR
PIRDQLLKERALRIREERCSVTTDDDAASELKLGRYWNKEERKQHAARAKEQRQRRELMK
QCCIESKEQAGAMDNKKEPDIIQLSRKKMMKRRNKRIFDNWMTIQELLTHGTKSTDGTRL
YNSFLSVTTV
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgacctagagcgtttcgaaggtcccgtggacccggacctaatctgtaaactg
tgtgggaaagttctagaggatcctctcagcactccgtgcggacatgtcttctgcgccgtc
tgcgcgctccagtggctctccaaagtcagcatctgccctgtccagtgccagaagatctcc
aggaaagagctgaaccacgtcctgccactaaaaaacctcattctcaagctgaacatcaga
tgcgaccaccgtgaacgaggctgcaaccgggtgatgaagctccagcatctgccagagcac
gcggagacctgcgcattttctccggtcagatgcgggaatgaaggatgcgacgcggtgctc
agcttgaaggatgtggcttcgcacatgcgggagggatgcgagcgcagggccgtggaggtc
tgtgaggacggatgtggactcgcgctgaccctcaaggagaggtccgaggaccacagctgt
ctgcaagctctcaagacacacagcggtctcctccaaagcaaagtgctgagtctggagaag
gagctgaagcgccagtcgctgagcttcagtaagagggagagatcgctcctctccaaactc
tccgcgctccactgcgagctgcacatcacggcgctcacatttcagaagaaaatcaccgag
tacaagagcaggatcgacgcgctgtcgagcagctggatgcccctcgagaagggtgaagaa
acaaggagcctcaaagtcaccctccacagaacatcatcaggatctcttggattcagtatc
attggaggaagattgtgtggggaaacagagcagcatggggatttcagtgatggcatctat
gtatccaaaatagtggaaaacggagcagctgacaaggccggactgcatgttcatgacagg
atcgttgaggtaaatggaagaagcatgtctgttgccacccatgatcaagcagtagaggct
ttccaaactgccaaagaccctattgaggttcaggtactgcgcaggacagcacacaatacc
tgcaagactcttgacccagcccgaggaatggaaaacagtactcagaccaacattatgctg
aaaacctcaaaccatatagagactttggccaagttaccattgcaggagagtttccgttca
ccttcacaacatcaaatggcaagacgtgactcaccttacccctcagacttccacaacggt
ttacagaaagaccatgagagtagagcactggaatacaaggtggatctgcagaggaaaacc
actcaggataagcttggcctgaagttatgttacaagacggatgatgagaagtccgccatt
tatatcagcgagattgatccagaaggaattgcagcaaaagatggcagagtccaggaagga
gaccagattatccagatcaatggaatggacatccagagccatgagatggcagtgacactt
cttaccaaggtggagagcaagaatgtctccctcctagtggctcgaccagaaagtcaggat
gttagctggttggaaaatagaaacagcttagaagactcgcacttgggcacactggagcag
caacttcaccaggtcaaggagttcactacacgtatgctgcagcagagcacaaatgaagaa
gatggcggcactacagatacggctactttactgtccaaccagcatgagaaagacagcggt
gtaggccgcacagatgaaagcactcgtaatgatgaaagctcagagcaggacatcgtgggg
gatgaccagaattccctctgtgacacgctcccagaaagccacaggaagtacatctataat
caggaaactgtcgaaagtggcaacatgcacctaagcaatgactccttcctttcagctgac
aatggagacggtggaagcttccttggtgtacctggcacggcatgtgaacatttctggaaa
ctgcttgaattgaaatctctggtcaatggtaacagtcctcagggatttctggagcataat
gccccactgtatgaaaagggggttaatgtagactgcgatgatcgggagattcggatgctt
aatgaagagttgcttaacattgagctggaatgcctgagtatcatacaagcacacaggctt
caggctgaaggtggtggtcagcaagccaaaaaacctagtgccaaggacttttctgagcaa
gtccatcaggacctcatcaataaccaagtggataatgaaggctctactagtgcttacaac
actggagagagctgctcgagtttacatcctactctggaaccagattctcttgaattccaa
agaatggttgctggagacatgggtaaaggttctccaatgcatagacgcaactcaacaaca
gcatgctccaaacataacctctctcccattcaggagatcagccctaccaagagtttacct
ggagatccagaggttacaaatcaggggaaacgaaagagtaagaaaaagaacccaaggaag
agtcttttgacatccttgcgtcattcgtcgtacaagaatacctatatcccagcccatgca
caacattaccaaagctatatgcagcttatccagcagaagtcagctgtggaatatgcccag
agtcaagtcagcttagccagcctgtgcaagaatgcagaaaccccccccacagagtccagg
ctcaagacggggtggaaggtaaagatccgtagcgatggaacaagatacatcaccaaaagg
cctatcagggaccagcttctgaaagagcgagccttgcgcattcgagaagaacgctgcagt
gtgactacagatgacgatgcagccagcgaactaaaactgggtcgatactggaacaaggag
gagcgcaaacagcatgcggcgcgggccaaagaacagcgtcaacggcgggaactcatgaag
cagtgctgcatagagagcaaagaacaagcaggagcaatggacaacaagaaggagcctgat
attatccaacttagccgtaaaaagatgatgaagaggaggaacaagagaatatttgataat
tggatgaccattcaggagctgctgacacatggcacgaagtccacagatggtacaagacta
tataattcctttctttctgtgactacagtataa
DBGET
integrated database retrieval system
