Carassius auratus (goldfish): 113041409
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Entry
113041409 CDS
T07313
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113041409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113041409
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
113041409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GTP_EFTU_D4
AAA_16
Motif
Other DBs
NCBI-GeneID:
113041409
NCBI-ProteinID:
XP_026055687
Ensembl:
ENSCARG00000010519
UniProt:
A0A6P6JD16
LinkDB
All DBs
Position
23:13819898..13850954
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AA seq
683 aa
AA seq
DB search
MSRHRNVRGYNYDEDFEDDDMYGQSVEDDYCISPATAAQFIYSRQDSRQARHVETLEEAE
YEEEEEEMPTSPSIAGTLDPLQQGRLYSCLDQMRAVLGDSIPDSTLTQAALKYDCDPQRA
LDFILTEENTNTHALPARTNPQPEPITTAAPQKAKAREASESRVEAEVVPKVARMTVSGK
KQTMGFDVRSAEENGVVAPSVRRGPSPEVTAAPTTETPSKPSAVNEDSAAPTPTRPAGKS
KQQLNIRAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQEAKK
AGKASFAYAWVLDETGEERDRGVTMDVGMTKFETDSKVITLMDAPGHKDFIPNMITGAAQ
ADVAVLVVDASRGEFEAGFEAGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEI
ISKLGHFLKQAGFKDSDVFYIPTSGLSGENLTTKSKVADLTAWYTGPCLLEQIDAFKPPQ
RSVEKPFRLCVSDVFKDQGSGFCVTGKIEAGFIQTGDKVLAMPPNETCTVKGITLHDEAL
DWAAAGDHVSLTVTGMDIIKINVGCIFCDPKEPIRACTRFRARILLFNIEVPVTQGFPVL
LHYQTVSEPATIRKLVSVLHKSSGEVLKKKPKCLSKGQNAVVEIQTHRPVALELYKDYKE
LGRFMLRYVGSTIAAGVVTEIKE
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgtcacaggaatgtccgaggttataactacgacgaagactttgaggatgatgac
atgtacggtcagtcagtggaagatgactactgcatctctcctgccactgctgcacagttt
atctactcgcgtcaagactcgaggcaggctcgacatgtagagaccctggaagaggcagaa
tatgaggaggaggaagaggagatgccaacatctccttccattgcaggcacactagaccca
ctacagcaaggtcggttgtattcctgtttggatcagatgagagctgtgctgggagattca
attccagactccacactgactcaggcagctctgaaatatgactgtgaccctcaaagagcc
cttgattttattctaactgaggagaacaccaatacacacgcccttccagccagaaccaac
ccacagcccgagcctatcaccacagctgcaccacagaaagctaaagcacgggaggcatca
gagagtcgtgttgaagcagaggttgtcccaaaggttgcccgcatgactgtgtcaggcaag
aagcagaccatgggctttgatgtgcgaagtgcggaagaaaacggagtagttgccccatca
gttcgcagagggccgagtccagaggtcactgctgcaccaaccacagagacaccatccaaa
ccatcggctgtgaacgaagactctgccgccccgaccccgactcgaccagctggaaagagc
aaacagcagctcaacatccgtgctgaactggagaagagacaaggaggaaaaccgcttctc
aacctggtggtcataggtcatgtagatgctggtaagagcactctcatgggtcatctgtta
tatctactggggaacgttaataagagaaccatgcataaatatgagcaggaggccaagaaa
gctggcaaggcctcattcgcttatgcgtgggtactggacgagacaggagaggagagagac
agaggagtgactatggatgtgggcatgacaaagtttgagaccgactcgaaggttataact
ctgatggacgcaccgggacacaaagatttcattccgaatatgattacaggggctgcacag
gctgatgtggctgtgttagtcgtagatgccagtcgtggggagtttgaggccgggttcgag
gcgggggggcagacccgtgagcacgggctgctggttcgatccctcggagtcacacagctt
gctgttgctgtcaacaagatggaccaggtgaactggcagcaggagaggttccaggaaatc
atctcgaagctcggtcactttctaaagcaggctggttttaaggattctgatgtgttttac
atccctaccagcggcctttcaggagagaatctgactactaagagtaaagttgcagatctt
acagcctggtacactggaccatgcctactggaacagatagatgcgtttaaaccaccccag
aggtcagtggagaagcccttcaggctttgtgtctcagatgtcttcaaagatcagggctct
gggttttgtgtgacggggaagatcgaggctggcttcattcagacaggcgataaagttctg
gccatgcctcctaatgagacctgcacagttaaagggatcactctccatgatgaagcttta
gactgggcggctgctggtgatcatgtcagtctaactgtaactggcatggacattatcaaa
ataaatgttggatgtatattctgtgatcccaaagagcccatcagagcctgtacaagattc
cgagcaagaattctcctatttaatatagaagttcctgtcacgcaaggcttccccgtactg
ttacattatcagactgtaagcgaaccagccactattaggaagttagtgagtgtattacac
aagagcagtggagaagttctcaagaagaaaccaaagtgtttgagtaaaggacagaatgct
gtggtggagattcagacacacaggcctgtggctctggagctctataaggactataaagaa
ctggggcggttcatgctgagatatgtgggctccaccattgctgctggggttgtcactgag
atcaaagagtaa
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