Carassius auratus (goldfish): 113043187
Help
Entry
113043187 CDS
T07313
Name
(RefSeq) MHC class II transactivator-like isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
caua
Carassius auratus (goldfish)
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
caua01001
]
113043187
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
caua04054
]
113043187
Enzymes [BR:
caua01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
113043187
Protein kinases [BR:
caua01001
]
Serine/threonine kinases: Other
TAF1 family
113043187
Pattern recognition receptors [BR:
caua04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
113043187
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
AAA_25
nSTAND_NTPase5
nSTAND3
AAA
Pox_A32
XPC-binding
LRR_8
AAA_16
AAA_14
NB-ARC
VapE-like_dom
TsaE
AAA_24
nSTAND6
Roc
Motif
Other DBs
NCBI-GeneID:
113043187
NCBI-ProteinID:
XP_026058199
Ensembl:
ENSCARG00000003304
UniProt:
A0A6P6JCP6
LinkDB
All DBs
Position
3:2686903..2710807
Genome browser
AA seq
1146 aa
AA seq
DB search
MVPFEYVLSQVRKALQASPSLLHELLRELHEANVFSTQYYQSLYKDGEDGECLRDLFYND
PEDLARRLTLPIWQNWGISQGILDSVLSKEKDMVPSDAEMQDIVVDLMSDLLPDSVFFEC
LNSLESIEEDFDPKCFDNFSVDTDRTSTPIPEKASFPGEVQSRKRKVDATSDSYCSNKKA
TAWPESPSNGRPATITPESSFHLSSNQLQHVLPFPFSPTLLPPSGGSPLQFIQPIGPYTA
PLIGTVVPSGTTYVIVSAVSPQCVSPGTQIIPLSPADGAVAPKELTVSELPVGSFSDSAC
QGLPPVSVDTLSPTKEGNAQKNYDSTPPKTERKIRPEAPECVKEYIHHIKSYMRDVCCSM
REGMEMESHYVDAHPVQRKLLIKSGKNANKCLEKELVVLSNSERKKAKLDRSQLFHNSDS
KLKQSVALLGKAGVGKTTFIQRLCLDWASGSMPQFQFVFLLNCQLLDLTQSNYSLKSLLL
DLSMSPRCEDSDSVFKHVLSCPDEVLIIFDSFDRIKDFEGLLQSPAKSHTNTKYTIKQLF
SGLFQKEILSGCTLLIATRPKDVLNQVLRKMDSLLELCGFSPQDIELYTSKYFGDSSLQE
SALKQIKNHRYISSLCSNPLLCSTICFLLEHQDSCNDDLPSTLTDLYQRATSKHLQLASL
ENNSLCKNRRQLDIPQLCKMAWEGLENHDSRVNPASSTELLNCALKSGILASYKTSECQE
NHFVDLFTQNLLSAVHLVQSEQVSEKMVVANSVVLQKKRKVQGESQDVLHRFVTGLVFRK
AADGVSILDGSVNIKAKRKAIETHLESMKPNDLVPARLLELFHCVYETSSAKFAKLLLKN
LPDNLSFYGTQLCPSDVYVICHLLQYASALKRTFSINLQDTCIPICGLKELVGLECIKSF
WAHTADTIGLWEDLHQNNDELNLKSAIEKFTLHPFKATQGYHIESLPVLVQIHRQKKLPM
SEFVSALDEGVPALRHLQRLEFELGVQNGPELFPKLIEVLPSLQSLQHLDLEKNQIGDSG
TEKLAGVLHFLECLKLLNLSQNHIGDVGVEKLAKALASVPSLQSLSLYGNAIADSGAENL
ASVLPNMNLLQDLDVKFNKFTDIGATKLSAALKNCTGMKSLELWNDCIPYGVFEHLHLQD
PRIRSL
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atggttccgtttgagtacgtactgtctcaggtgagaaaagctctacaggccagccctagc
cttctgcacgagcttctgagagagctgcacgaggccaacgtcttctccacccagtattac
cagtctctctacaaggatggtgaagatggagagtgtttgcgtgaccttttttataatgat
ccagaagatctggccagaagactcactttacctatctggcaaaactggggcattagtcaa
ggcatcctggattcagtactctccaaagagaaggatatggttccttctgatgctgaaatg
caagacattgtcgtagacctgatgtctgatcttttacctgacagtgtcttctttgaatgt
ctcaactcacttgagtctattgaagaagatttcgatcccaaatgctttgataacttttca
gttgacacggacagaacctccacgccaataccagaaaaggcttcttttccaggtgaagtg
caaagcagaaagcgaaaagttgatgcaacttcagacagttactgcagcaacaaaaaagca
actgcgtggcctgaaagtccctcaaacggaaggccagccaccattacccctgagagtagc
ttccatctgagctcaaaccagctccagcatgtgttacccttccctttcagtcccactctt
ctgccccctagtggaggttcaccactacaattcatccagcccatcggcccttatactgcg
cctctaattggcactgtggttccatcagggactacgtatgtgattgtatctgcagtgtcg
ccccagtgtgtgagtccaggcactcaaataattcctctttcacctgccgatggtgcagtt
gccccgaaagagctcactgtttccgaacttccagttggctcattttcagacagtgcatgc
cagggtttgccaccagtatctgtagacacactgtcccctacaaaagaaggaaacgcacag
aaaaactatgattccacacctccaaaaactgaaaggaaaatccgcccagaagcaccagaa
tgtgttaaggagtacatacatcacatcaaatcatacatgagagatgtctgctgctctatg
cgtgagggaatggaaatggagtcacactatgtggacgcgcatccggtccagaggaaactc
cttataaaatccggcaagaatgcaaataagtgtttggagaaagaactggtcgtccttagt
aattcagagcgaaagaaagcgaagctagaccgaagccagttgtttcataacagtgattcc
aaactaaaacagtcagtcgctctcctgggaaaagccggagtggggaaaaccacattcatt
cagcgtttatgcctggactgggcaagcggcagcatgcctcaatttcagtttgtttttttg
ttgaactgtcaacttttagacctcacgcaatctaactacagcttgaaaagtttactgttg
gatttgtctatgtctcctcgctgcgaggactcagactctgtgttcaaacacgttctgtcc
tgccctgatgaagttctcattatcttcgacagcttcgatcgcattaaagactttgagggg
cttctccaatcccctgctaaatcacacacaaacactaaatacaccatcaaacagcttttt
tcaggtttgttccaaaaggaaatcctctcgggctgcacgctcctcattgccacgaggcct
aaagatgttttaaatcaggtgctgcgaaaaatggacagccttttggagctttgtggcttc
tctcctcaggacattgagttgtatacgtcaaaatattttggggattcctccctccaagaa
agtgcacttaaacagattaagaatcacagatacatatccagtttatgctccaacccgtta
ctttgttcgactatctgcttccttctcgagcaccaagacagctgcaatgatgatttgcct
tcaaccctcacagacttgtaccaaagagcgacctcaaagcatctgcaactagctagcctt
gaaaataactcactgtgtaaaaatagaagacagctggacatcccacagttgtgcaaaatg
gcatgggagggactcgagaatcatgattcacgtgtaaaccctgccagttccacagagctg
ctgaactgcgctcttaaaagtggcatacttgcatcctacaaaacatctgagtgccaggaa
aaccactttgtggaccttttcactcagaacctcctgagcgctgtgcacctggtacagtct
gaacaggtgagcgaaaaaatggtggtggcaaacagcgtagtccttcagaaaaaacgaaag
gttcagggagagtcgcaggacgtgctgcacaggtttgtcacgggcttggtcttccggaag
gctgctgatggagtcagcattctggacggcagtgtcaacataaaagccaaaagaaaggct
atcgaaacccatctggagagcatgaagcctaatgatttggttcctgccaggttactagaa
ctgtttcattgtgtttacgagaccagcagtgccaaatttgccaaactgctgttgaagaac
ctgcctgacaatctgtcattctatgggacgcagctttgcccgtcggacgtgtatgttata
tgccatctccttcaatatgccagtgcattgaagcggaccttctccattaacctgcaagat
acatgcattcccatctgtggcctgaaagagcttgtgggactcgagtgtatcaaatcattc
tgggcacacacagcagacaccattggcttatgggaggacttgcatcaaaacaatgatgaa
ctgaacctgaaaagtgccattgagaaattcaccttgcacccattcaaggcaacacaagga
tatcacatagagagcctgcctgtacttgtccaaattcacagacagaagaagttaccgatg
agtgaatttgtgtctgcactggatgaaggtgtaccagctctccgacatcttcagagactg
gagtttgagctcggagtccagaacggtcctgaacttttccctaaactcatagaggtcctg
ccttctctgcagtctctccaacatctggaccttgagaaaaaccaaataggagactctggc
actgagaaacttgctggcgttttacattttttggaatgtctgaaattgctaaatctgtct
caaaaccacattggagatgttggagtggagaaactggctaaagctttggcatcagtccct
tctctacagagtctcagcctctatggaaatgcaattgctgacagtggagctgaaaatctg
gcctcggttttaccaaacatgaacttactgcaggacttggatgtaaagttcaacaagttc
acagacattggagctacaaagctcagtgctgctctgaaaaactgcacaggaatgaagtct
ctggagctgtggaacgactgcattccatacggagtttttgaacacctccatcttcaagat
ccacggataagatcactttaa
DBGET
integrated database retrieval system
