Carassius auratus (goldfish): 113043251
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Entry
113043251 CDS
T07313
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113043251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113043251
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113043251
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113043251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
113043251
NCBI-ProteinID:
XP_026058278
Ensembl:
ENSCARG00000008876
UniProt:
A0A6P6JEL8
LinkDB
All DBs
Position
25:complement(10595772..10618948)
Genome browser
AA seq
2382 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLALLNSSNVDLRGFAAQFVKQKLPDLLRSYVDADLGGSQEGGFQDIAIEV
LHLLLSHLLFGQKGSSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPDKRDILMDRIL
PDSGELNKTMMESSLADFMQEVGYGFCASLEECRNIIMQYGMREVTASQVARVLGMMART
HSGLSDGIGLQSISNPVGGGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTY
ELDHPGFLIRDSKGLQIVVCGIQRGLGLEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVF
CFADYPCHAVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFPIKH
CPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIM
HSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDK
WLTDKIREHGEPFIQACVTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQSCA
GSVSQELSETILTMVANCSNVMNKARQPPPGVLPKGRAPSTSSLDAISPVQMDPLSAISS
LSLGVSSTSHTPSMQGFPSLQGSAFSNPQSPAKAFSNLPNPNPSTAFPVISPLSSQLQGS
LSTSLTGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKEIDDE
ANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNVKREREVFNCMLRNLFEEYRFFPQYPD
KELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKD
YPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQAQAQSQTP
KPPQPGQTCTLVTTATTTTTAPKTTTITRPTAVGPKKDVPPSINTTNIDTLLVATDQTER
IVEPPENVQEKIAFIFNNLSQSNMSQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHS
LYSNFLDTLKNPEFVKMVLSETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKN
KPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFRPQNPWTMGIMNVLA
ELHQEHDLKLNLKFEIEVLCKNLSLDISELKPGNLLRDKEKLKNLEEQLSAPKKETKPPE
EMLPIVTTVDSVPFTAAPSTPATTTTCTATGPPTPQFSYHDINVYALAGLAPHINININI
PLLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESHMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAARIAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPMVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWPTDDVAHIYDKCISDL
EQHVHAIPPALAMNPQTQAMRSLLEAIVMARNSRDGIAALGLLQKAVEGLLDATSGADPD
LLLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVDAVELLIRNHLVNM
QQYDLHLAQSMENGLNYMAVAFAMQLVKLLLVDERSGSHITEADLFHTIETLMRTNAHSR
ANAPEGLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQH
PTTSPAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVGMLTMVLGIVVGVL
IQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGF
VYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKG
TLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDM
LSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQL
INALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQL
RYPNSHTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPA
FKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7149 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgtcacggc
cctgaggcagaccggcatttattacgctgtctcttttcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcaccagacacagtttctgatccaggagtgcgtgtct
cttattacaaaaccaaattttatttctacgctttgttacgccattgacaatcctctgcac
tatcaaaagagtttgaaaccatcacctcatttatttactcagctgagtaaagttctcaag
ctaagcaaggttcaggaggtgatttttggccttgctctgctgaactccagtaacgtagac
ctccgagggtttgctgctcaatttgtgaagcagaagctccctgacctcctccgctcgtac
gtggacgcagacctcggagggagtcaggaaggtggcttccaggacattgccatagaggtt
ctgcatctgctcctctcccatcttctgttcggtcagaagggctccagcggagtcggtcaa
gagcagattgacgcgttcctcaaaacactgtgcagagatttcccgcaggagcgctgtcct
gtggtgctcgcaccactgctgtaccctgacaaacgggacattctcatggacaggatcctg
ccagactctggagaattaaacaagaccatgatggagagttcacttgccgacttcatgcaa
gaagttggctatggcttttgtgcaagtcttgaagagtgcaggaacataatcatgcagtat
gggatgcgagaggtgacagccagtcaggtggccagagtgctgggcatgatggcccgcact
cactctgggctgtccgatggcatcggcctgcagtccatctcaaatccagttggtggtggg
atctggagtgatgggaaggacaagagtgacggctctcaggcccacacctggaatgttgaa
gttctaattgatgtggtcaaagaagtgaaccccaatctgaatttcaaggaggtgacctat
gagctggatcaccctggcttcctgatccgggacagtaaggggcttcagatagtggtctgt
gggatccagaggggtctgggattggaggtgttcccagtggacctcatctacagaccatgg
aagcatgcagaaggacagctgtcattcattcaacactcactgatgagtcctgaagtcttc
tgctttgctgactacccctgtcatgctgttgccattgacatcctgaaggccccacctgag
gatgacaaccgagaaatagccacatggaagagcttggacctagtggagagcctcttgcgc
ctctctgaagttgggcattatgaacaggtgaagcagctcttcagctttcccatcaagcac
tgcccggacatgctagtgctggcgctgcttcagatcagtacatcctggcacaccctgcgt
catgagctcatctccaccctcatgcccatcttcctgggcaaccaccccaactctgccatc
atcttgcactatgcctggcatggacagggccagtccccatccatccgccagctgatcatg
cactctatggctgagtggtacatgagaggagagcagtacgaccaggccaagctatcccgc
atcctggatgtggctcaggacttgaagtctctatcgatgctgctgaatggtactccgttt
gcctttgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaa
tggctcactgacaaaattcgagagcacggggagcctttcatccaggcgtgcgtcacattc
ctgaagagacgttgtccctctatcttgggtggtttggctccagagaaagaccagccgaaa
agtgctcaacttcctcctgaaactctggctaccatgcttgcatgtctgcagtcttgtgct
gggagtgtgtctcaagagctgtcagagacaatcttgaccatggtggccaactgtagcaat
gtgatgaacaaggcccggcagccgccaccaggagtcttgccaaagggacgagctcccagc
accagcagcttagatgctatttcacctgtgcagatggaccctctctctgcgattagctct
ctgagtctaggtgtctcgtccacctctcacaccccgagcatgcaaggattccccagcctg
cagggctctgccttcagtaacccccagtccccagccaaagccttctcgaacctgcccaac
ccgaaccccagcacagctttcccagttatcagccccctctcttctcagctccaaggttct
ctgagcacaagcttgactgggattggctcaggtttgggcatgcccgctgtcagcagtgac
cccttcggcaccaggaagatgagcacaccggggctgaacccacccaccttccagcagact
gatctctctcaggtgtggcccgaggcaaaccagcactttagtaaggagatagacgatgag
gcaaacagctacttccagcgcatctacaaccatcctccacaccccacaatgtccgtagat
gaggtgctggaaatgctgcagagatttaaggactcgaacgtcaagcgggaacgggaagtt
tttaactgcatgctgaggaatctgtttgaggagtaccgattcttccctcagtatccggac
aaagagctacacatcaccgcttgcctctttggggggatcattgagaaaggcctggtcacg
tacatggcgctgggcttggccttacgatatgtcctggaagccttacgcaaacctttcgga
tcaaagatgtattactttgggatcgctgcactagatcgatttaaaaatagactgaaggac
tatccccagtactgtcagcacttggcatcaatagcccatttcctgcagtttccgcaccat
ttacaagagtatattgagtatggccagcagtccagagaccctcctgtgaagatgcaaggc
tccattaccaccccaggtagcctagctttagcccaggctcaagctcagtctcagaccccc
aaaccccctcaacctggccagacctgcaccttagtgaccacagccaccaccacaaccact
gctcccaaaaccaccaccatcacgagacctacagctgttggaccgaagaaggacgtccca
ccttcgatcaacaccacaaacattgacaccttgttggtggccacagaccaaactgaaagg
atcgttgagcccccagagaatgttcaggagaagattgcattcatcttcaacaacttgtcc
caatcaaacatgtcccaaaaggtggaggagctgaaagagactgtgaaagaagaattcatg
ccctgggtttctcagtacctggttatgaaacgtgtcagcattgagcccaacttccacagc
ctgtattcaaacttcctggacacactgaaaaacccagagtttgtcaagatggttctcagt
gagacttacagaaacatcaaggtcctccttacctctgataaggcagctgctaacttctca
gatcgatccctgctgaagaatttgggtcactggcttggaatgatcaccttagctaaaaac
aaacccatactgtacacagacctggagctgaaatctctcttgctggaggcttatgtgaaa
ggccaacaggagttactgtatgtcgtcccctttgtggccaaagtcttggaatcaagtcta
cggagtgtgatcttcagaccgcagaacccttggaccatgggtatcatgaatgtactggct
gagctccaccaggaacatgacttaaagcttaacctcaagttcgagattgaggtgctctgc
aagaatctgtctttggacatcagtgagctgaaaccaggaaacctactgagagacaaagag
aagctgaagaacttggaggagcagctctctgcaccaaagaaagagaccaagcctcctgaa
gagatgctgcctatagttacaacagtagattctgttccatttacagccgctccgtcaact
ccggccaccaccacgacctgtacggccacgggaccacccacaccacagttcagctaccat
gacatcaatgtgtatgccttggctggcctggccccgcacatcaacatcaatattaacatc
ccattactacaggcccaccctcagctgaagcagtgtgtgagaccagcaattgagcgtgct
gtacaggaacttgttcacccagtggtggaccgatccatcaagatcgccatgaccacctgt
gagcagatagtcaggaaggacttcgcgctagactctgaggagtctcacatgcgtgtggcc
gcccaccacatgatgcgtaacctgactgccggcatggccatgatcacctgcagggagcct
ctgctcatgagcatcgccaccaacctgaagaacagctttgctgcagctcttagggctccc
acaccccagcagagagagatgatggaagaggcggctgctcgcatcgcacaggacaactgt
gagcttgcttgttgctttatccagaagacagcggtggagaaagctggaccagagatggac
aagaggctggcaactgaattcgagctgaggaagcacgctcgccaagaaggtcgacgctac
tgtgaccctatggtgctcacctatcaggctgagcgcatgccagagcagatcagactgaag
gtcggtggagtggatcctaaacagctggctgtttatgaagagtttgcccgtaatgtccca
ggtttcctacccagtaatgacctgtctcaaccaactggtttccttgcccagccaatgaag
caacaggcatggcccacagatgatgtggctcacatctatgataagtgcatttcagacctg
gagcagcacgtgcatgcaattccacctgccctggccatgaacccacagacccaggccatg
cgcagccttctggaggccattgtcatggctagaaactcccgtgatggcatagctgccctg
ggccttttgcagaaggctgtggagggtcttctggatgccaccagtggcgctgatcctgat
cttttgctgagctacagggagtgccacctgctggtgctgaaagccctacaggacggtcgt
gcctacggtccacagtggtgcaacaaacaaatcaccagatgcctgattgagtgcagagat
gaatacaagtacaacgttgatgctgtggagctcctcattagaaaccacctggtcaacatg
cagcagtatgacttacacctggctcagtccatggagaacgggctcaactacatggccgtg
gcattcgccatgcagctggtgaagctcctactggttgatgagcgtagcgggagtcacatc
actgaagcggatctcttccacaccattgagacgctgatgaggaccaacgcccactccaga
gctaatgctcctgaaggtttgccccagctgatggatgttgtccgctccaactatgaggcc
atgatcgatcgtcaccatggtgggccgaacttcatgatgcactctgggatttctcaagcc
tccgagtatgatgacccaccaggccttagagagaaggcagagtacctgctgagagaatgg
gtcaacctataccactcagcagctgcaggaagagacagcaccaaggccttctctgcattc
gttggccagatgcaccagcagggcatcctgaagaccgatgacctgatcactcgcttcttc
cggctgtgcacagaaatgtgtgtggagatcagttatcgtgctcaagccgaacagcagcac
ccaaccaccagccctgccatcatcagagccaagtgctaccacaacctggatgcttttgtt
cgtctcattgcgcttcttgtcaaacactccggagaggccaccaacacggtcaccaaaatc
aaccttctcaacaaggttggaatgcttacaatggttctaggcattgtggtgggtgtgttg
atccaggatcacgatgtgaggcagacggagttccagcagcttccgtaccacagaatcttc
atcatgctcctgctggagctaaacgcaccagagcatgtgctggagaccatcaacttccag
accctcactgccttctgcaataccttccacatcctgaggccaactaaagcacctggtttc
gtctatgcttggctggagctcatctcacaccgcatcttcattgccagaatgcttgcacat
accccacaacagaagggttggccaatgtatgcccagctgctgatagacttgttcaagtat
cttgcacccttcttaaggaatgttgaactcaacaaacctatgcaaattctctacaaggga
acacttcgtgtgctgcttgtcctgctacatgacttcccagaattcctgtgtgactaccat
tatggtttctgcgacgtcatcccgcccaactgcatccagctgaggaacctgatcctgagt
gccttcccccgcaatatgaggcttccagaccccttcacccctaatctgaaggtggatatg
ctgagtgagatcaacatcgctccccgcatcctcactaacttcaccggtgtgatgccgtcc
cagtttaagaaggatcttgactcctacctcaagacccgttctcctgtcaccttcctttct
gagctgcgcagcaacctgcaggtgtccaacgagccaggcaaccgttacaacattcagctg
atcaatgctctggtgctatacgttggaacccaggccattgcccacatccacaacaagggt
agcactccctccatgagcaccatcactcactcggctcacatggacatcttccagaacctc
gcagtcgatctagacactgagggccgctatctgttcctgaatgcgatagccaatcagctg
cgttatccaaacagccacacgcactactttagctgtaccatgctgtatttgtttgccgag
gccaatgctgaagccattcaagagcagatcaccagggtcctgctggagaggctgattgtg
aacaggccgcacccgtggggtctgctcatcaccttcattgagctgatcaagaaccctgcc
tttaagttctggagccatgattttgtgcactgtgccccagagatcgagaagttgttccag
tcggtggctcagtgctgcatggggcagaagcaagcccagcaggtgatggagggaacgggt
gccagttag
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integrated database retrieval system
