KEGG   Carassius auratus (goldfish): 113044046
Entry
113044046         CDS       T07313                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
caua  Carassius auratus (goldfish)
Pathway
caua03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:caua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    113044046
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:caua03021]
    113044046
   03036 Chromosome and associated proteins [BR:caua03036]
    113044046
Transcription machinery [BR:caua03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     113044046
   Coactivators
    SAGA/TFTC/STAGA complex
     113044046
Chromosome and associated proteins [BR:caua03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     113044046
    STAGA complex
     113044046
    TFTC complex
     113044046
    SAGA complex
     113044046
    SLIK complex
     113044046
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_CDC20-Fz TFIID_NTD2 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR55 Beta-prop_WDR36-Utp21_1st NBCH_WD40 ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_Aladin Beta-prop_VPS8 Beta-prop_TEP1_C Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_Vps41 Beta-prop_WDR41 Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_HPS5 WD40_RFWD3 Beta-prop_SPT8 Beta-prop_WDR19_1st Beta-prop_DCAF12 WD_LRWD1 Tricorn_2nd Beta-prop_Nup120_160 PEP5_VPS11_N VPS8_N LisH_PAC1 Beta-prop_ACSF4 PROPPIN RAB3GAP2_N LisH_TPL Beta-prop_WDR11_2nd DUF4719
Other DBs
NCBI-GeneID: 113044046
NCBI-ProteinID: XP_026059421
Ensembl: ENSCARG00000007611
UniProt: A0A6P6JIB6
LinkDB
Position
26:complement(1473075..1481448)
AA seq 737 aa
MAAVQDGQMELDAEKETKPEVLSDGTSNLSGSTASGTPLTAGGAPTQEDQQTLIAVLQFL
KRNKLSDSVEILRREAGLGDQEDSQTLEGSGGGKGDGGGGDANSLLSRVSIPSAAAPQNT
PTPATVKRADEQLDVSVVLSAYSQQGDPSLYQVYYSGLKNFIESVLDCHRAELSQLFYPL
FVHMYLELVYNNHESKAKAFFEKFGGDQECYYQDDLRILCGLTKKEHLKGNEALLDFRTS
RFVLRISRDSYQLLKRHLQERHNNQIWNIIQEHLYIDIFDGMPRSKSQIDSLSGSFAGEA
RREVNKVKVFHGLLKEPEIEVPLDDEDDEAENEEGKPKKKKTKKDSVGSKSKKQDPNAPQ
QNRIPLPELKDSDKLDKVMYMKECTKRIRLNPENLPSICFYSFLNAYQGLTAVDFTDDSS
LLAGGFADSTVRVWSVTPKKLRKVKSATELNLIDKESDDVLERIMDEKTASELKILYGHG
GPVYGLSFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTHFSPFGYYFVSG
GHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNYVATGSTDRTIRLWDVLNGNCVR
IFTGHKGPIHSLAFSPNGKFLASGSTDGRVLLWDIGHGLMIGELKGHTDTIYALKFSRDG
EILASGSMDNTVRLWDSIKAFDDVETDDFTAATGHVPLPDNSQELLLGTYHSKSTPVTHL
HFTRRNLLLAAGAYTSQ
NT seq 2214 nt   +upstreamnt  +downstreamnt
atggcggctgtgcaagatggacagatggagctggacgcagagaaagagacaaagccagaa
gtcctcagcgatgggacgtcaaacctctcggggagcacagcgagcgggacgcccctcacc
gccggcggagccccgacgcaggaggaccagcaaactttgatcgcagttctgcagtttcta
aagcggaataaactgtcggactcggtcgagatcctgcggcgggaagccggtttaggagac
caggaggactcacagactctcgagggcagcggaggagggaagggggacgggggtggaggg
gatgcaaactctctgctcagccgggtgtccatcccatcagcagccgccccccaaaacaca
ccgactcccgcaacagtcaagagagcagatgagcagctggatgtcagtgtggtgttatca
gcctacagtcagcagggggatccctctctgtaccaggtgtactacagcggcctgaagaac
ttcatcgagtccgtgctggactgtcaccgagcggagctgtcccagctcttctaccctctg
ttcgtccacatgtacctggagctggtctacaacaaccatgagagtaaagcaaaggctttc
tttgagaagttcggcggcgatcaggagtgttactatcaggatgacctgcgcattctctgc
ggcctcactaagaaagagcacctgaaggggaacgaggcgctgctggacttccgcaccagc
cggttcgtgctgcgcatctccagagactcgtaccagctgctcaagagacacttgcaggaa
aggcataacaaccagatatggaacatcattcaggagcacttgtacatcgacatctttgac
ggcatgccacgcagcaagagccagatcgacagcttgtccggcagttttgcaggagaggcc
aggcgagaagtcaataaagtcaaggtattccatgggcttctaaaggagccagagatcgag
gtcccgttagatgatgaagatgatgaagcagagaatgaggaagggaagcccaagaagaag
aaaacaaaaaaagacagtgtgggctccaagagtaagaaacaagaccccaacgctcctcaa
cagaacaggatccctctgccggagctgaaggactccgacaaactggacaaggtcatgtac
atgaaggagtgcaccaagagaatccggctcaacccggagaacctgccttccatttgcttc
tattcgttcctcaatgcctaccagggtttgacggcagtagacttcactgatgactccagt
ctgttagcgggagggtttgcagactccaccgtccgcgtatggagcgtcacacctaaaaaa
ctacgcaaggtcaaatctgcaacagagctgaatctgattgataaagagtctgatgacgtt
ctggagaggatcatggacgagaagacggccagtgagctgaagatcctctacggtcacggc
gggccggtgtacggtctcagcttcagtccagacaggaactatcttttgtccagttctgag
gacggaacagtcagactgtggagcctgcaaacgtttacgtgtctcgtggggtataaagga
cataactatccagtgtgggacactcacttctcaccctttggttattacttcgtgtctgga
ggacatgacagagtagcacgcctctgggcgaccgatcattaccagcccttgcggatattt
gctgggcatctagctgacgtcacttgcacgcgattccaccccaactctaactatgtggcc
acaggctcgactgaccgcactatacgcctctgggatgtcctgaatggaaactgtgtccgc
attttcactggtcacaagggccccatccattctctagcattctcacccaatggaaagttc
ctggcatctggatccacagacgggagagttttactatgggatattggacatggactgatg
atcggagagctgaagggtcacacagacactatttatgccctcaagttcagcagagatgga
gagatcctcgcatcaggctctatggataacacagttcgactatgggactccattaaggct
ttcgatgacgtggagaccgacgacttcactgcagcgacgggccatgttcccctgccggat
aactcccaggagctgctgcttgggacgtatcacagcaaatccacacctgtcacccacctc
cacttcaccagacgcaacctgctactggctgcaggcgcgtacacctctcagtga

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