KEGG   Carassius auratus (goldfish): 113044072
Entry
113044072         CDS       T07313                                 
Name
(RefSeq) protein PAT1 homolog 1-like
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
caua  Carassius auratus (goldfish)
Pathway
caua03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:caua00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    113044072
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:caua03019]
    113044072
Messenger RNA biogenesis [BR:caua03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     113044072
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     113044072
SSDB
Motif
Pfam: PAT1 LRR_RI_capping
Other DBs
NCBI-GeneID: 113044072
NCBI-ProteinID: XP_026059451
Ensembl: ENSCARG00000014980
UniProt: A0A6P6JIE6
LinkDB
Position
26:2579127..2589605
AA seq 767 aa
MFHFQSFEDDCTLEEEGLVEEEDEIDQFNDDTFGAGAIDDDWQEEHARLAELDEQVRDGP
HGAGDASSVDLPLAGGSAHSSALPQPSSSSRLYPDIDERGGDDLAESLTRLILGSDPAIA
GVGTARSDRPHLPPMLSGQAPLPSALAGQSSLLLSYQQQQQLMRRGPAPLPQINSHSIWE
NSMGFSPVSSGLVSQKEDKTLMSIIKEVGLPNRPPALREEGRDLSERVPPPRSSSPVIGS
PPVRAVPIGTPPKQPMSHVHNHQNNHPSAIHVRASVPLRYPPPFPERLSPNNLLSIANSP
LSHPPFPAGVGPVLSQIQRAQLLNSQIGQFPRGPAPPLLQGGVGGFRPFFGPSGPRMGPH
GPPLGHAPIRHNTTHLHPQHRRMLNQRMQNRGLGDHVGGRGVGDRRNRDPYSNLMTQREK
EWVARIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERDRDTRKEHTTKLITPQVAKLEHTY
RPVQFAGSLGKLTVSSVNNPRKMIDAVVTSRSDDECTFCHFAGKREKQVWNKRRQILYIV
EKMYSLLLEVQDFEKKFLQTPEHQRDALLEQHKTHTLQLYNSLREKEWDDRVSDEQCLMI
MSVRKGKRLISRLLPFLPQTQAAAIVMGIARNLPALAKKDKQDQVLCWLVKPVTPVIQSM
SSTSLTDLLQELQGSEGQLPLVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTEL
VFSVTRELLKVPSSALSSPLFTPPNLVSLFSRYVDRQRLELLQEKLQ
NT seq 2304 nt   +upstreamnt  +downstreamnt
atgttccattttcagtcttttgaggatgactgcaccctggaggaggaagggttggtagag
gaagaagatgaaattgaccagttcaatgatgacactttcggtgcaggggcaatcgatgat
gattggcaggaggagcacgcccggctcgcagagcttgatgagcaggtacgagatggacca
catggagcgggcgacgcctcctccgttgacctccctctcgcaggcggcagtgcccactct
tcggccctccctcaaccctcctcttcctcccggctttaccctgacatagatgaacggggt
ggtgatgacctggcggagtcgctgactcggctcatcttgggctcggatcctgctatcgct
ggagtgggcaccgccaggtcagacagacctcaccttcctccgatgctgtccggtcaggct
cctctgccctcggcattagctggacagtcttctctgctgctgagctaccaacaacagcag
cagctcatgcgcagaggcccagctcctcttccacagataaactctcacagtatttgggaa
aacagtatgggcttcagtcctgttagttctggactagtcagtcaaaaagaggacaaaacg
cttatgtcgattatcaaagaagtaggacttcctaatcggcctcctgcactccgagaagaa
gggcgagatttgtccgaaagggttccgcctcctcgctccagctcacctgtgattggaagt
ccacctgtaagggctgtacctattggaacacctcctaaacagcccatgagtcacgtccac
aatcaccagaataatcacccttcagccattcacgtgagagcttctgtgccactgcgctac
cctcctccctttcctgagcgtctgtcccccaacaacctcctcagcatcgctaactccccg
ttgtctcatcctccgttccctgctggtgttggtcctgttctgtctcagatacagagagcc
cagctgctcaactctcagattggtcagttccctcgtggtccagctcccccattattacag
ggaggtgtcgggggtttcaggccgttctttgggccgtctggtcctagaatgggtccccat
gggccacctcttggccacgcacccatccgacacaacaccacccacctccacccgcagcac
cgcaggatgctcaaccagaggatgcagaacagaggcttgggtgatcacgtcggaggcaga
ggtgttggagacaggagaaacagagatccttacagcaatctgatgacacaaagagagaag
gaatgggtagcgagaatccaaatgatgcagctgcaaagcaccgatccgtatctggatgac
tactattaccagaattattatgagaagatggagaagcgtcaggagcgggaccgagacacc
aggaaggagcacaccaccaaactcatcactcctcaggtggctaaactggagcacacctat
cggccagtgcagtttgctggctcgttaggaaaactgactgtctccagtgtgaacaatcca
aggaaaatgattgatgccgtggtgacctctcgcagtgatgatgagtgtactttttgtcat
tttgcaggaaaaagagaaaagcaagtgtggaacaaaagacggcaaatcctttacattgtg
gagaagatgtacagtctactattagaagtgcaagactttgagaagaagttcttgcagacc
cctgagcaccaaagagatgccctgctagaacagcataaaacacacacgctgcagctctac
aactctctccgagaaaaagagtgggacgaccgagtgagcgatgagcagtgcttgatgatc
atgtctgtgcgtaaggggaaacgcctcatctccagactcctccccttcctgccacagacc
caggctgctgctattgtcatgggaatagccaggaaccttccagctctggccaagaaagac
aaacaagatcaggtactgtgttggttggtaaagccagtgacgccagtaatccagtccatg
tcgagtacctccctcactgatctccttcaggagctgcaaggcagtgaaggacagcttccc
cttgtgctgcaaaataagtttggcgtgacgttgctctatctgattctaagtgaaggagag
aggatgcagagctccgatcccaactgtcagctcatggacgataaccgctggactgagttg
gtgttctctgtgacgcgggagcttctgaaggtcccgtcctctgcgctttcatcaccgctg
tttactcctccaaacctagtgtccctgttctctcgatacgtggaccggcagagactcgag
ctcttgcaggagaagctacagtga

DBGET integrated database retrieval system