Carassius auratus (goldfish): 113044072
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Entry
113044072 CDS
T07313
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113044072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113044072
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113044072
mRNA degradation factors
5'-3' decay
Decapping complex
113044072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
Motif
Other DBs
NCBI-GeneID:
113044072
NCBI-ProteinID:
XP_026059451
Ensembl:
ENSCARG00000014980
UniProt:
A0A6P6JIE6
LinkDB
All DBs
Position
26:2579127..2589605
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AA seq
767 aa
AA seq
DB search
MFHFQSFEDDCTLEEEGLVEEEDEIDQFNDDTFGAGAIDDDWQEEHARLAELDEQVRDGP
HGAGDASSVDLPLAGGSAHSSALPQPSSSSRLYPDIDERGGDDLAESLTRLILGSDPAIA
GVGTARSDRPHLPPMLSGQAPLPSALAGQSSLLLSYQQQQQLMRRGPAPLPQINSHSIWE
NSMGFSPVSSGLVSQKEDKTLMSIIKEVGLPNRPPALREEGRDLSERVPPPRSSSPVIGS
PPVRAVPIGTPPKQPMSHVHNHQNNHPSAIHVRASVPLRYPPPFPERLSPNNLLSIANSP
LSHPPFPAGVGPVLSQIQRAQLLNSQIGQFPRGPAPPLLQGGVGGFRPFFGPSGPRMGPH
GPPLGHAPIRHNTTHLHPQHRRMLNQRMQNRGLGDHVGGRGVGDRRNRDPYSNLMTQREK
EWVARIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERDRDTRKEHTTKLITPQVAKLEHTY
RPVQFAGSLGKLTVSSVNNPRKMIDAVVTSRSDDECTFCHFAGKREKQVWNKRRQILYIV
EKMYSLLLEVQDFEKKFLQTPEHQRDALLEQHKTHTLQLYNSLREKEWDDRVSDEQCLMI
MSVRKGKRLISRLLPFLPQTQAAAIVMGIARNLPALAKKDKQDQVLCWLVKPVTPVIQSM
SSTSLTDLLQELQGSEGQLPLVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTEL
VFSVTRELLKVPSSALSSPLFTPPNLVSLFSRYVDRQRLELLQEKLQ
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgttccattttcagtcttttgaggatgactgcaccctggaggaggaagggttggtagag
gaagaagatgaaattgaccagttcaatgatgacactttcggtgcaggggcaatcgatgat
gattggcaggaggagcacgcccggctcgcagagcttgatgagcaggtacgagatggacca
catggagcgggcgacgcctcctccgttgacctccctctcgcaggcggcagtgcccactct
tcggccctccctcaaccctcctcttcctcccggctttaccctgacatagatgaacggggt
ggtgatgacctggcggagtcgctgactcggctcatcttgggctcggatcctgctatcgct
ggagtgggcaccgccaggtcagacagacctcaccttcctccgatgctgtccggtcaggct
cctctgccctcggcattagctggacagtcttctctgctgctgagctaccaacaacagcag
cagctcatgcgcagaggcccagctcctcttccacagataaactctcacagtatttgggaa
aacagtatgggcttcagtcctgttagttctggactagtcagtcaaaaagaggacaaaacg
cttatgtcgattatcaaagaagtaggacttcctaatcggcctcctgcactccgagaagaa
gggcgagatttgtccgaaagggttccgcctcctcgctccagctcacctgtgattggaagt
ccacctgtaagggctgtacctattggaacacctcctaaacagcccatgagtcacgtccac
aatcaccagaataatcacccttcagccattcacgtgagagcttctgtgccactgcgctac
cctcctccctttcctgagcgtctgtcccccaacaacctcctcagcatcgctaactccccg
ttgtctcatcctccgttccctgctggtgttggtcctgttctgtctcagatacagagagcc
cagctgctcaactctcagattggtcagttccctcgtggtccagctcccccattattacag
ggaggtgtcgggggtttcaggccgttctttgggccgtctggtcctagaatgggtccccat
gggccacctcttggccacgcacccatccgacacaacaccacccacctccacccgcagcac
cgcaggatgctcaaccagaggatgcagaacagaggcttgggtgatcacgtcggaggcaga
ggtgttggagacaggagaaacagagatccttacagcaatctgatgacacaaagagagaag
gaatgggtagcgagaatccaaatgatgcagctgcaaagcaccgatccgtatctggatgac
tactattaccagaattattatgagaagatggagaagcgtcaggagcgggaccgagacacc
aggaaggagcacaccaccaaactcatcactcctcaggtggctaaactggagcacacctat
cggccagtgcagtttgctggctcgttaggaaaactgactgtctccagtgtgaacaatcca
aggaaaatgattgatgccgtggtgacctctcgcagtgatgatgagtgtactttttgtcat
tttgcaggaaaaagagaaaagcaagtgtggaacaaaagacggcaaatcctttacattgtg
gagaagatgtacagtctactattagaagtgcaagactttgagaagaagttcttgcagacc
cctgagcaccaaagagatgccctgctagaacagcataaaacacacacgctgcagctctac
aactctctccgagaaaaagagtgggacgaccgagtgagcgatgagcagtgcttgatgatc
atgtctgtgcgtaaggggaaacgcctcatctccagactcctccccttcctgccacagacc
caggctgctgctattgtcatgggaatagccaggaaccttccagctctggccaagaaagac
aaacaagatcaggtactgtgttggttggtaaagccagtgacgccagtaatccagtccatg
tcgagtacctccctcactgatctccttcaggagctgcaaggcagtgaaggacagcttccc
cttgtgctgcaaaataagtttggcgtgacgttgctctatctgattctaagtgaaggagag
aggatgcagagctccgatcccaactgtcagctcatggacgataaccgctggactgagttg
gtgttctctgtgacgcgggagcttctgaaggtcccgtcctctgcgctttcatcaccgctg
tttactcctccaaacctagtgtccctgttctctcgatacgtggaccggcagagactcgag
ctcttgcaggagaagctacagtga
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