Carassius auratus (goldfish): 113044195
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Entry
113044195 CDS
T07313
Symbol
limch1
Name
(RefSeq) LIM and calponin homology domains-containing protein 1 isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
caua
Carassius auratus (goldfish)
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
caua04990
]
113044195 (limch1)
Domain-containing proteins not elsewhere classified [BR:
caua04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
113044195 (limch1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
113044195
NCBI-ProteinID:
XP_026059704
Ensembl:
ENSCARG00000022961
UniProt:
A0A6P6JJ26
LinkDB
All DBs
Position
26:7183513..7233943
Genome browser
AA seq
1839 aa
AA seq
DB search
MASPGDDSASNAYLDQAESADASPEPAFQEAQKWIEAVTGRSFGDKDFRSGLENGILLCE
LLSSIKPGLVKKINRLPTPIAGLDNLTMFLRGCEELGLKGSQLFDPGDLQDTSIRANLTG
SDCSRKLKNVLITIYWLGKAANSCATYNGPTLDLKEFEGLLSMMRKEGVNEDLDSPKRSI
RDSGYIDSWESERSDSLSPPRHGRDDSFDSLDSFGSRSQNTPSPDTVIRCNSDDSEGDAG
NRKLPDVRKDDMSARRVSYKEPRVALPFNQYLPNKSNQTTYLPAPLRKRRSDREEDRRSL
SNSTSPVGGERPLRQECLQVLKEEAVVSRSLVFQKNSTWVNEKGVELEEAELNKMRKLEK
AGIKVLPAPVRYNSPIVNPVEASKAKPPSPDIILRRENEFMCTAAPQQWDSNDEDDDEEA
ERKVPDVQKDDLASRRARMNQFKPSVAHHFLPGSCSWKDREKWEGIRLASQHAVLERMEK
MEQEKKSQADSASPEVPIIIRKDNPFLNPEKDRGKEGNEEDEREEEGKIVVPNPLKDDLA
KRRTGRGPHPPKDPHQSLVQTSITQSDLETWQRLKMNTDSSESDSTPAEVSIITRKDNPF
LTPEKDSESEQEKEKEEGTDREKVARVVIPNVKTDDLARRRAQSGPVPQRDPRQSLAQTT
ITQSDLEKWQRLKMNTESSDAPIVPLCQTCLEKGCLSVSSKMTVAKNDLASCRERSSGER
RRFVTFGGVTEMESTSWKEEEDEEGGEGQGNEAEKLRYLLSMAPVAVPTIGLGSLLKKRA
VGSGDANPEPPPIVTPEPPNSVMFDLKKPLTSTERRVLDVELAEKAKDEREADEEDEEEE
RQPDIEKDDMLARRTGALQKPASGTSYNRFLPQPGSKRQCATAASLSQKGTSGERDLQYF
ERSIKTKRTKIGQRNEPVSQVTKTPVPVAVVTDKNPDIVRSSATNANRSGGYDDDDDKCG
HDDQLSYFEKDDMLAQRTGSYQKPSAGQAFNAFLPKPGAVKHKISPVSGSQSYLKPREQE
TALSLDSFTLSSVAPPPRDAEDTPRKCPQMMDRQEAGSVGVVGHESLIKDETFTKTPSPT
PHQPPRRPLWQEDDDLPPIFRATSVSDTESMSLIDMRDEEDEMAYLRPHSQSRHELLHNQ
YNKLKEEEDQWQDDLARWKNRRRSASQDLIKKEEERKMMEKLMTADGGSGHRRKSIKTYK
EIVEEKERREQELHEQYCKASTPEEKAAVLQRYALRFTISDAILEKLQLPKLPSAAPPMH
TSPLHQPEKKLTCTTLVEAEVPEPEQTTQTHHSGYTDQKTAQKQAPTPEPLPSETSKAPE
VLSAPTRVPPAPLKPVPLITPKPYSQPKFSQSLHKSVKSDGLIRVNGDSRERDDKDSMLC
PQINVSSSPPKPDTQSQQKEELIVLEASEHQQNVQTSISDKEKEVIKEGKKCSLSPQEED
TSTTLLLSEPEGKQPVPDTMMKRSCVVTTTIVTELTQTHPVPPTDASSTEQLNSVYSSCD
VSSTAESSKTSCSLSLTEGIDYSIDCIETPMSNLAKRVDHWTWDPNEERRRQERWQQEQE
RLLQEKYQREQEKLKEEWERAQREVEEEERRHHEEERRILEETVTPLTPRTSGLSSCMVT
DAPPLSQPSAPHDTIVLSLADWERKQEMLEKEAQTNQSNRLTHSPDQGITPAQQNGQRTE
PQQSQTAKPQLQFIQDGSWSCKSKDRQEDLKKTASLDRNQSPPQSQTTRMRRTGSYENVL
ETHPSKSPTPSQDTPPPSPSRSVSGKKLCSSCAHPLGKGAAMIIESLGLYFHIQCFKCGI
CKGLLGDTSAGTDVRIRNGLLNCQECYIKSRAAGQPTTL
NT seq
5520 nt
NT seq
+upstream
nt +downstream
nt
atggccagtcctggagacgactcggcttcaaacgcctatctggatcaagctgaatctgct
gacgctagcccagaaccagcgtttcaggaggctcaaaaatggatcgaggccgtgacagga
agaagtttcggcgacaaggattttagaagcgggctggagaacggcattttgctctgcgag
ttactgagttcaatcaaaccaggccttgtgaaaaagatcaatagacttccaacacccatt
gcagggctggataatctgaccatgtttctgagaggatgtgaagagctgggattgaaggga
tcacagctgtttgatcccggagacctgcaggatacatcgatacgagcaaacttaacgggc
tctgactgcagtagaaagctgaagaatgtgctcataaccatatactggcttggaaaagct
gctaacagctgtgcaacatataacggccccacactcgacctgaaagagtttgaagggctt
ctttccatgatgcgaaaggagggtgtcaatgaagatttagactcccctaagcgcagtata
agggacagcggttatattgacagctgggaatcagagcgctctgattcgctgtctcctccg
aggcatggccgtgatgattcgtttgacagtctcgactcatttggctcacgatcacagaac
acaccctccccagacacagttattcgctgcaacagtgatgactctgaaggtgacgctggg
aatagaaagttgccagacgtgcgtaaggatgacatgtctgcccgccgcgtgtcctacaaa
gagcctcgggtagctctacccttcaatcagtatctgccaaacaagagcaaccagaccacc
taccttcctgctcccctgaggaagaggaggagcgacagagaggaagacaggaggagtctg
agcaactccacatcccctgtaggaggagaaagacctctcagacaagagtgcttacaagtg
ttaaaagaggaggctgtcgtgtctcgaagccttgtgttccagaaaaactccacctgggtg
aatgagaaaggggtggagcttgaggaggcggagcttaataaaatgagaaagctggaaaag
gcgggaataaaagtattacctgcccctgtgcggtataacagtccaatagtgaaccctgtg
gaggccagtaaagctaaaccaccttcacctgacatcattctccgtcgtgaaaatgagttc
atgtgcaccgctgctccacaacagtgggattcgaatgatgaagatgatgatgaagaggca
gaacggaaggttccagatgtccaaaaggatgatcttgcatctcgcagagcacgaatgaat
cagtttaaacccagcgtggcacatcacttcttgccaggctcttgtagctggaaggaccga
gaaaaatgggagggaatcagactggcatcccagcatgccgtgttggagaggatggagaag
atggaacaggagaaaaaaagtcaggctgactctgcctcccctgaggtgccaatcattatt
cgtaaggacaatcctttcttgaatcctgaaaaagacaggggaaaagaagggaatgaggaa
gatgaaagagaggaagaggggaagatagttgttccaaacccactcaaagatgatttagcc
aagaggcggactgggagagggccacaccctcccaaagatcctcatcagtcattggtccag
acttccatcactcagtcagacctggagacatggcagaggctcaagatgaatacagatagc
agtgagtctgactccactcctgctgaagtgtcaatcataactcgcaaggacaaccccttc
ctgacccctgagaaagacagtgagagtgagcaggagaaggagaaggaggagggaacagac
agagagaaagtggcgagggtggtgatccctaatgtaaagactgatgacctggccagaagg
cgggcccaaagtgggcctgtcccacagagggacccccggcagtcattggctcaaacaacc
atcactcaatcagacctggagaaatggcaaaggctcaagatgaatacagagagcagcgat
gcccctattgtccctctgtgtcagacgtgtcttgagaaaggctgcctctctgtttcctcc
aagatgacggttgccaagaacgacctggccagttgccgagaacgttcctccggtgaacgg
cggcgttttgtgacatttgggggtgtgacagagatggagagtacttcctggaaagaggag
gaggatgaggaagggggagagggacaggggaacgaggcagagaagcttcggtatctcctc
tcgatggcacctgttgctgtacccaccataggactgggctccttactgaaaaagagagcg
gtgggcagtggagatgcaaaccctgagcctcctcccatcgtgacccctgaacctccgaac
tctgttatgtttgaccttaaaaagcctttgacttccaccgagcgcagagtgctggatgtg
gaactagctgagaaagcaaaggatgagagggaggctgatgaagaggatgaagaagaagag
aggcaaccagatatagaaaaggacgacatgctagctcgtagaacaggagcattacagaag
ccagcaagcgggacttcatataacagattcctcccacagccgggttcaaagagacagtgt
gctacagcagcttccttatcccagaaaggaacgagtggagaaagagatctgcaatatttt
gaaagaagcataaagacaaagagaaccaagattggacagagaaatgaaccagtcagccaa
gtaacaaagacacctgttccagttgctgtagtcacagacaagaaccccgacattgtacgt
tcttctgcaactaacgccaatcgctctggcggttacgatgatgatgatgataaatgtggg
catgatgatcaactgtcatattttgagaaggatgacatgcttgcacaaaggaccggatct
taccaaaagccaagtgcaggacaggcttttaatgcttttctgcccaaacccggtgctgtc
aagcataaaatcagtcctgtcagtggatcgcagtcatacctcaagccaagagagcaagag
acagccctgtctctggacagcttcacccttagctctgtggccccgcccccaagagatgct
gaggacacgcctaggaagtgccctcagatgatggacaggcaggaggcgggctctgtgggt
gtggtggggcatgaaagtcttattaaagatgagacctttaccaaaaccccctcccccaca
cctcaccagcccccacgtcggcccctttggcaggaagacgatgatctccccccaatattc
agagctactagtgtttctgacacagagagtatgagtttgattgacatgcgtgatgaagag
gatgagatggcgtaccttcggccacacagccaatcacgacatgagctcctacacaaccag
tacaacaaactcaaagaggaggaggaccagtggcaggacgacttggctcgctggaagaat
cggaggagaagtgcatctcaagatttgatcaaaaaggaagaagagaggaagatgatggag
aagctaatgacagcagacggaggatctggccatcgcaggaagagcatcaagacatacaaa
gaaatcgtagaggagaaagagcgtagggaacaggaactacatgaacaatactgtaaggcc
tccaccccagaagagaaagcagctgtgctacagcgctatgctctccgtttcaccatcagc
gatgccatattggagaaactccagctccccaaactgccttctgctgctccaccaatgcac
acgtcaccacttcatcaacccgagaagaagctgacatgcaccaccttagtagaagcagag
gtcccagagcctgaacagactacccaaacacaccacagtggttatacagaccagaagact
gcacaaaaacaggcaccaacccctgaaccattaccttctgagacctccaaagctccagaa
gtcctgtcagcacccacaagagttcctccggctccactgaagcctgtacccctgatcacc
ccaaagccctacagccagcccaaattcagccaaagcctccacaaatcagtgaagagtgat
gggctgatccgtgtgaacggtgacagcagagagagggatgacaaagattctatgttgtgt
cctcaaatcaacgtctcttcctcacctccaaagccagatactcagagtcaacaaaaggag
gagctcattgttttagaagcctcagaacaccagcaaaacgtacagacttccatttctgac
aaggagaaagaagtcataaaggagggaaaaaagtgttctcttagtcctcaggaagaagac
acctcaactacactgttgctgtcagaaccagaaggaaagcagccagtgcctgacacaatg
atgaagcgcagctgtgttgttacaacaaccatagtgacagaactcactcagacacacccc
gtcccaccaactgatgcgtccagcaccgagcagctcaattcggtctatagttcatgtgat
gtgagttcaactgccgagtcaagcaagacttcatgctcgctctcattgacagaggggatt
gactactccattgattgtattgaaaccccaatgtcaaaccttgcaaaaagggttgatcac
tggacatgggatcctaatgaggagcgcagacgacaggagaggtggcagcaggagcaggaa
cgcctgctgcaggagaaatatcagcgagagcaagagaagctgaaggaggagtgggagaga
gcgcagagagaagtggaagaggaggagaggaggcaccatgaagaggaaaggcggatactg
gaggaaaccgtgaccccactgacccctcggacctcaggtttatcatcctgtatggtgaca
gatgctccgcccctcagccagccctctgccccacatgacaccattgtcctctccttggct
gactgggaaaggaaacaggaaatgttggagaaagaggcacagacaaaccagagtaacaga
cttacacacagccctgatcaaggaatcacaccggctcagcagaatggtcagagaactgaa
cctcagcagagccaaacagctaaaccacaactgcagtttatacaggatggctcttggagc
tgtaagtctaaagacagacaagaagatttgaagaaaaccgcctcattggatcgtaatcag
agtccacctcagagccagaccacgaggatgaggaggactgggtcgtatgaaaatgtatta
gagacacacccatcaaaatcacccacaccatcacaagacacgccacctccatcacccagc
aggtcagtaagtggaaagaagctttgctccagttgtgcacatccattgggtaaaggagca
gctatgatcattgaaagcttggggttgtacttccacattcagtgttttaagtgtggcatt
tgtaaagggttacttggagacacaagtgctggaactgacgtcagaattcgaaatggactt
cttaattgtcaagaatgctacataaaatcaagagctgctggccagccaacaacattgtga
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integrated database retrieval system
