Carassius auratus (goldfish): 113045250
Help
Entry
113045250 CDS
T07313
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03013
Nucleocytoplasmic transport
caua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113045250
03015 mRNA surveillance pathway
113045250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113045250
Enzymes [BR:
caua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
113045250
5.6.2.5 RNA 5'-3' helicase
113045250
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
113045250
mRNA cycle factors
Common to processing body (P body) and stress granule
113045250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
113045250
NCBI-ProteinID:
XP_026061277
Ensembl:
ENSCARG00000011474
UniProt:
A0A6P6JPT7
LinkDB
All DBs
Position
27:complement(6712996..6732942)
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGHTQSQLDSQVNG
PDGVLPNGDDAVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDMAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTATDRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSSTGRPSNMYFQTHDQVGMIGTGPNPMGSMN
IPIPFNLMMPPMPPPGYLGQVNGPAAGRGAPKGKTGGRGGRQRNRGTGNHGSGQANMSSS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcagacgctcaccttcctggacacggaggaa
gcggagctgctcggggccgacacgcagggctccgagttcgagttcaccgacttcacgctg
cccagccagacccaaactcagggccacacccagagtcaactcgacagccaggtgaatggg
cctgatggtgttctgcccaacggagacgatgcagtggtgaagaccagccaacttctggct
gagctgaactttgaggaggatgaggaagatacttactacactaaagatttgccggtgcac
gcctgcagctactgtggcatccatgatccagcatgtgttgtctattgcaacaccagcaag
aaatggttctgcaacggccgcggaaacacctctggcagtcatattgtgaaccacttggtg
agggctaaatgtaaggaggtgacgctgcataaggacgggccgctgggagagacggttctg
gagtgctataactgcggctgccgtaatgtgttcctgctcggcttcatcccggctaaagcc
gactctgtcgtggtgcttctgtgcaggcagccgtgtgccagtcagagcagtctgaaggac
attaattgggacagctctcaatggcagcccctcatccaggaccgctgcttcctgtcctgg
ctggtgaagatcccgtccgagcaggagcagctgagggcacgtcagatcaccgcacagcag
atcaataaactcgaggagctctggaaggaaaacccaacggcgaccctggaagatttggag
aaacctggagtggacgaggaacctcagcacgttctgctgcgatatgaagatgcctatcag
taccagaacatctttgggccgctggtcaaactagaggctgactatgacaagaaactcaaa
gagtcccaaactcaagacaatataacagtgaggtgggatttgggactgaataaaaagcgg
atagcttatttcactctgcccaagacggattcaggtgacatgcgactgatgcaaggagac
gagatctgtctgcggtataaaggagacatggctccgctgtggaaagggatcggacacgtc
atcaaagtcccggacaattatggagatgaaatcgcaatcgagctgcgcagcagtgctggt
gcacctgtggaggtaacacataacttccaggtggactttgtctggaaatccacatctttt
gaccgcatgcagagcgccctgaagacgtttgctgtggacgagacctctgtgtccggctac
atctatcacaagctgctgggtcacgaggtggaggacgttatcatcaaatgccagctgccc
aaacgcttcactgcgcagggcctgccagatcttaaccactcacaggtttatgctgtgaag
acggtgctgcagcgacccctgagtctgatccaggggcctccaggaaccggaaagactgtc
acctctgccaccatcgtctatcatctggccagacagggcaatggtccggttctggtttgt
gctccgagtaacatcgcagtggatcagctgacagagaagatccatcagacgggactgaag
gtggttcgtctgtgcgctaagagtcgtgaggccatcgattccccggtgtctttcctggct
ctgcacaatcagatccgcaacatggacagcatgccagagttgcagaaactgcagcagctg
aaggacgaaactggcgagctgtcgtcttctgatgagaaacgctaccgagctctcaaacga
accgctgagagagagctgctcatgaatgcagatgtgatctgctgcacatgtgtgggtgcg
ggtgaccctcgcctggctaagatgcagtttcgctccatcctcatcgatgagagcacacag
gccacggagcccgagtgcatggtgccagtggtgctcggggccaaacagctgattctggtg
ggtgaccactgtcagctgggtcctgtggtcatgtgcaagaaagcagctaaagcaggtctg
tctcagtctctgtttgagaggctggtggtcctgggcatcagacccatccgtctgcaggtg
cagtaccgcatgcacccggccctcagcgccttcccttcaaacatcttctacgagggctct
ctgcagaacggggtcaccgccaccgatcgcatcaagaaaggctttgacttccagtggcct
cagcccgataagcccatgtttttctatgtaactcaaggccaggaggagatcgcaagctct
ggcacctcctatctcaacaggaccgaggcgtctaatgtggagaagatcaccacccgtctg
ctgaaagctggagccaaacccgaccagatcggcatcattacaccctacgagggtcagcgc
tcttacctggtgcagtacatgcagttcagcggctctctgcacaccaaactataccaggag
gtggagatcgccagcgtggatgcgttccagggcagagagaaggacttcatcatcctgtct
tgtgtcagagctaatgagcaccagggcatcggcttcctgaacgacccgcgacgtctcaat
gtggcactaaccagagccagatatggcgtgatcattgtgggcaaccctaaggctctgtcc
aagcagcctctgtggaaccacctgctcaactactacaaggagcagaaggttctggtggaa
ggaccgctcaacaacctgagagagagcctcatgcagttcagcaaaccacgcaagctggtc
aacaccatcaaccctggagctcgtttcatgagtactgccatgtatgacgcgagagaggcc
atgattcctggatctgtgtatgatcgcagcagcactgggcgtccgtctaatatgtacttc
cagactcatgaccaggtgggcatgatcgggaccggcccgaaccccatgggctccatgaac
atccccatcccgttcaatctgatgatgcctcccatgcctccgcctgggtacctgggacag
gtgaacggacccgctgccggtcgtggtgctcctaaaggtaagaccgggggtcgtggaggt
cgtcagaggaaccgtggcaccggtaatcacggcagcgggcaggccaacatgtcaagcagc
caggccagtcaggatctagtgtcccagcccttctctcagggtccactgacccagggctac
atcaccatgagccagccgtcacagatgagccagcctggactgtcccagcccgagctctct
caggatagctacctgggtgatgagttcaaatcccagatggacgtggcgctttcccaggat
tccacctaccagggagaacgggcttatcaacacggaggagtgacgggactctcacagtac
tag
DBGET
integrated database retrieval system
