Carassius auratus (goldfish): 113045356
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Entry
113045356 CDS
T07313
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
KO
K07603
collagen type XVII alpha
Organism
caua
Carassius auratus (goldfish)
Pathway
caua04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
113045356
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GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
113045356
NCBI-ProteinID:
XP_026061524
UniProt:
A0A6P6JNY0
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Position
1:complement(6153644..6170285)
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AA seq
1434 aa
AA seq
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MDKLTTTKIVKAEGGSGGSGKVTETQKHTETVTTTRLTSLPPKGHSSSSSSQQVLTSSVN
SSGSGGASGGAVLVEKKIFTQSSAEGGAFRSYVISSSSSGSSGSSSSGAGSVISGFDEIS
REISVTGPISSSTVKSSSSAVKGSSSVCTSITTVGGSSATGGDLSSGYGSISSSELVSGS
SGGFVSVSGGSMNISRGGGGGTGSSAVMSAAGTSSSMTVTKFSSSSPGGTRKGLSYSKVP
AERKTGLNIHTGGYEGSSSGNSSPEYVKKEYVSTSAATRGRTHTRESEIRARLQSASPST
RWTELDDVKRLLKGSRSGSISPPRSPTNTLPIPKKASVDTRHESQSGYDGTVLDTGFSGY
YTNPNNLSYTTLQQPSSPTGGMQNNRTLSSSALGYGTHNNLSTSGGALMVNGISTGQVYG
AQKNVGSAGFATTVTTVPSSPITADDVFVKDGKFIAIGKENVAAKKESERLIMSKNTGKQ
FVTSTTSAGADSEDSLKREKKMISSITESTMTASRASTKDKATYAEIRKDESDEAGLGFC
SCCSWWKWLLALILGLLLLLGLLCGLIALGEEFRKLKARVDAIDGGERAVSARTSRLSAS
SAVNIIDPLESSYAERVSGVRADNTINLGSAAAAQDPVVLERTIQQILRSELQSDTIRAS
LATSLKGERGEPGPKGDQGPPGVKGDTGFPGISGPPGIIGHPGQEGPRGPKGSAGESGND
GLPGPRGREGPVGHRGEPGPPGIGEKGEKGSSGDVGAPGLTGPPGPVGPKGDAGAQGVPG
LSGAPGPQGFRGDSGEPGPKGDKGPAGPPGVKGDQGERGPRGSTGEPGQVGPAGPPGEKG
LKGSAGAPGPDGVKGIRGDQGPIGLPGARGPSGPPGDAGIPGAPGLQGPPGLPGIPGQPG
AKGEPGEPGRVISAGSNTNTVGVPGPPGPPGAPGPAGPPGLSGPIGPAGLPGPPGSKGDR
GDKGEDGKPGVSESAGKKATSEPGPPGPPGLPGPPGPSGKDGKPGIGQPGPPGEKGEPGS
FVPNSETFFAGPPGPPGPIGPKGSQGDIGPQGFPGQPGLPGDPGIGIPGQPGIPGPRGEQ
GPEGPPGPLGPQGPVGPMGPEGPKGDAGVPGAPGIPGYSYGGGSRSAPGPPGPPGPPGPP
GAPGSSGGGSPDVVQQISDYLRSEPIREYLTGPPGPPGPPGSPGSGSEDSLANRVIEYLQ
RDEVRQYLIGPPGPPGPPGGPGGYGFNTQEVAGRVLGLLNDAGFTGLPGPPGPPGPQGPP
GGIVSYAVNENQPQIRAERQEYIKSHPSSDENLDYAVIAKKVSDYIMSRGLLQGRDGLRG
IAGPPGVPGQKGTNGNPGFPGRPGPVGPPGPSGPPGTSPELPYSNMTAIIDYIRDHRMIG
PQGIPGQKGDEGAPGFPGPKGVPGAPGAPGMKGSKGEKGEASYITRRRRRSTVI
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atggacaagctaaccacaaccaagattgtgaaagcagaagggggatctggaggatcagga
aaagttacagaaacccaaaaacacacagaaactgtaacaaccacaagactgacatctcta
cctccaaagggacacagcagctcctcgagcagccagcaggtactgacctccagtgtgaac
agctcaggctctggaggagcttcaggtggagctgttctggtggagaagaagatcttcacc
cagagcagcgctgaaggaggcgctttcagaagttatgtcatatcctcctcctcgtctgga
agttcaggcagcagcagttcaggagcaggatctgtgattagtggatttgatgaaatatct
cgtgaaatcagtgtaaccggacccattagtagctctacagttaaaagttctagctctgca
gttaaaggctctagcagtgtctgtacctccatcacgacagtaggtggttcctcagcaacc
ggtggagatctttcctctggatacgggtccatctcctcctctgagttagtgtctggatcc
tcaggcggttttgttagtgtttccggaggcagtatgaacatatccagaggtggaggaggt
ggcactggctcctctgcagtcatgtctgccgcaggtacttccagctccatgactgtgacc
aagttcagctcctcgtcgcctggtggaacaaggaaaggtttgagttacagcaaagttcct
gcagagaggaagaccggtctgaacattcacaccggaggatatgaggggagctccagtggg
aattcttcccctgaatacgtaaagaaagaatatgtttcgacaagtgctgccactagagga
cgcacgcacacacgagagagtgagatcagagccagattgcagagtgcctctccctccact
agatggacagagctggatgatgtgaagagattactgaagggaagtcgctctgggagcatt
agtccacctcgctctcccaccaacactctacctatcccgaaaaaagccagtgtggacacc
cgtcatgagagccagtcaggttatgacggtacagtcctggatacaggattcagcggatat
tacaccaacccaaacaatctcagttacaccactctgcaacaaccatcatctcccacaggt
ggcatgcagaataatcggaccctcagctcatctgccctcggatatgggacgcataataat
ctgtcaacatctggtggtgctctcatggttaatggaatcagtactggccaagtgtatggg
gcacagaagaatgttggcagcgctggatttgccaccactgttactactgttcccagcagc
cctatcaccgctgatgatgtgtttgtgaaagatggcaagtttattgcgattggaaaagaa
aatgttgcagctaagaaagagagtgagagactgatcatgtccaaaaacactggcaaacag
ttcgtcacttccaccaccagtgctggagcagattctgaagattcgcttaagagggagaag
aagatgatctccagcattacagaatccacaatgactgcttccagagcctcaacaaaagac
aaggcaacctatgcagagatccgtaaagatgagtctgacgaggcaggcctaggattctgt
tcctgctgctcgtggtggaagtggcttctggcgttgatcttaggtcttctccttctcctg
ggacttctctgtggtctcatcgcactgggtgaggagttccggaagctgaaggctcgtgtg
gacgctattgatggcggagaaagagcagtctctgctcgaactagtcgtttgtccgcctcc
tcagctgtgaacatcatcgatccactggagtcttcatacgctgagcgcgtctctggtgtc
cgtgccgataacactataaacctgggttcagcagctgctgcacaagaccctgtggttctg
gagaggaccatccaacagatcctcagatctgaacttcagtcggacaccattagagcttca
ctggcaacttcacttaagggtgagagaggagaacctgggcctaaaggagaccaaggacct
cctggagtgaaaggtgatacagggtttcctgggatttcaggtcctcctggaatcattggt
catcctggacaggaaggtcctcgaggacccaaaggaagtgcaggtgaatcaggaaacgat
ggtttacctgggccgaggggtcgagaggggccagtgggccacagaggagaaccaggaccc
ccaggaattggagagaaaggagagaaaggttcttctggcgatgttggtgcaccagggcta
acaggaccaccaggccctgtgggtcccaaaggggatgcaggtgcacaaggcgtaccaggt
ctttcaggagctcctggaccccaaggcttccgtggagactctggtgaacctggacccaag
ggagataaaggacccgcagggccacctggggtcaaaggcgatcaaggagagagaggtcca
cgtggttccactggtgagccaggtcaggtcggaccagccgggcctcctggtgagaaaggt
cttaaaggatcagcaggtgctcctgggccagatggtgttaaaggaattcgaggcgatcaa
ggtccgattggtttgcctggagctcggggaccctcagggcctcctggagacgcaggaata
ccaggtgcaccaggactccaaggaccaccaggtttgccaggtattccgggccagccagga
gctaaaggtgagcccggtgagcccggaagagtcatttctgcaggctctaatactaacaca
gtgggtgtacctggaccccctggacctcctggagctccgggtcctgctggaccacctgga
ctatcaggtcctatcggtcctgctggtcttcctggtccacctggttcaaagggagataga
ggagacaaaggagaagatgggaagcccggagtctctgagagcgcagggaagaaagctact
tctgaacctggtcctcctggcccacctggtctgccaggaccacctggaccgtcgggcaag
gatggaaaaccagggattggtcaacctggtcctcctggtgaaaaaggtgaaccaggaagc
tttgtacctaattcagaaaccttctttgcgggaccacccgggcctcctggacctattgga
ccaaagggatcacaaggtgatattggtcctcaaggtttccctggccagcctggattacct
ggagaccctggaatcggtattccaggacagccagggataccaggaccacgtggagaacaa
ggtcctgagggtccaccaggaccactgggacctcaagggccagtgggtcccatggggcca
gaaggtccaaaaggtgatgctggagtccccggggcccctggcatcccaggatactcctac
ggtggaggttccagaagcgctccgggacctccaggtccacctggacccccagggcctccc
ggagcacccggttcatcgggtggaggctcaccagatgttgttcaacagatttcagactac
cttagaagtgagcccattagagaatacctgactggacctccaggcccacctggaccacca
ggatctcccggatcaggctctgaagattcgctagctaaccgtgtcattgaataccttcaa
agagatgaggtgaggcagtacctgattggtcctccagggcccccaggacccccaggtggt
ccaggtggatatggctttaacactcaggaagttgctggacgagtgctgggtctgttgaat
gatgctggtttcacaggtctgccaggacctcccggtcccccaggacctcaaggaccacca
ggaggaatagtgtcttatgctgttaatgaaaaccagccacaaatccgtgcagagcgtcag
gaatatatcaagagccacccgagctctgatgagaatttggattatgcagtcatcgctaaa
aaggtttcagattacataatgtcgcgtggcctgttacaaggtcgagatggtttgagaggg
attgcaggtccaccaggtgtaccaggtcaaaaaggaaccaatggaaaccctggattccct
ggacgccctggacccgttggaccccctggaccctctggacctccaggaaccagtccagaa
cttccttactctaacatgactgcaatcatagactacatcagagaccaccgtatgattgga
ccgcaaggtataccagggcagaaaggggatgaaggagctcctggattcccaggaccaaaa
ggtgtaccaggcgccccaggcgccccaggaatgaaaggatcgaagggagagaagggtgag
gcttcatatatcactcgtcgtcgtcgaaggagcacagtcatttag
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