Carassius auratus (goldfish): 113046003
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Entry
113046003 CDS
T07313
Name
(RefSeq) ATP-dependent RNA helicase DDX42-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113046003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
caua03041
]
113046003
Enzymes [BR:
caua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113046003
Spliceosome [BR:
caua03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
113046003
Complex B
113046003
Complex C
U2 SnRNP specific factors
113046003
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
Gluconate_2-dh3
Motif
Other DBs
NCBI-GeneID:
113046003
NCBI-ProteinID:
XP_026062608
Ensembl:
ENSCARG00000003502
UniProt:
A0A6P6JSD6
LinkDB
All DBs
Position
3:7633715..7641104
Genome browser
AA seq
899 aa
AA seq
DB search
MNWNKGGPGGKRGFGFGGFSLGGGNKEEPSLPPKAHSAFGASGPSGGFGKNQQLSSFYKI
GTKRANLDEENAYFEDDEEESSSTDLPYIPAENSPTRKQFQAGGGGGGSDSEDDPLDAFM
AEVEDQAAKDMKKLEEKEKEKTLTKGIRDDIEEEDEQEAYFRYMAENPTAGLTQEEDEEE
VDYDSDGNPIAPTTKKIIMPLPPIDHSEIDYPPFEKNFYIEHEELSSLTEAGVVELRRKL
NLKVSGALPPKPATSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALGGRDMIGIAKT
GSGKTAAFIWPMLVHIMDQKELEQGEGPIAVVVCPTRELCQQIHSECKRFGKVYGLRSVA
VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEY
QVRSIASHVRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDVTQIVEVLQ
SGQEKWGWLTRRLVEFTSAGSVLIFVTKKTNCEELATNLNQEGYSLGLLHGDMDQSERNK
VIADFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAY
TLLTTKDTSFAGDLVRNLEGANQSVSRDLMDLAMQNPWFRKSRFKGGKGKKLNIGGGGLG
YRERPGLGSESTERSSSGGGASLGNYEAYKPSTGAMGERMSALKQAFQAQYKNHFVAASG
VPPKLTTKSSSSSGWTSAGSLSSLPSGAPEGPDRTQLSYSPSSSSSFISMPPPPALSSGT
KMSGFSSAGSLSSVSDSNSSSSSKEGSRSDRNSDDRGRHRDRESHYRHGDRHSGGDRDRY
GERDRHSDRDRHGDNRNGEGSNRDREGRSERDGGERSGTHKDSFVVPDAPKRKKSRWDN
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaagggaggcccgggtggcaagcgaggctttggattcgggggattctct
cttgggggtgggaataaagaggagcctagtcttcccccgaaggcccactctgcatttgga
gcttcaggaccatcaggtggatttggcaagaatcagcagctttcgtctttttacaaaata
ggaacaaaacgagccaatttggacgaggagaatgcttattttgaggatgatgaagaggag
tctagcagtacagatctgccgtatatacccgccgagaactcccccacaagaaagcagttt
caggctggaggaggtggagggggctccgacagtgaggatgaccctcttgatgcttttatg
gctgaggtggaggaccaagcagcaaaggacatgaagaaacttgaggaaaaggaaaaagag
aaaacgctgaccaagggtatacgggatgacatcgaagaggaggatgagcaagaagcatat
tttcgttacatggcagaaaacccaacagctgggctgacccaagaggaagatgaggaagaa
gtggactatgacagcgatgggaaccccattgctcctactaccaaaaagataatcatgcca
ctgccccccattgaccactcagagattgactatcctccttttgagaagaacttctatatt
gagcatgaggaactcagcagtctgactgaggctggagtggtggaactgagacggaaactc
aatctgaaggtttcaggtgcattgcctcctaaaccagccaccagttttgcccactttgga
tttgatgagcagctcatgcaccagatccgtaaatccgagtacactcaacccacacccatc
cagtgtcagggtgttccgatagctttgggtggcagagacatgattggcattgccaaaact
ggcagtggaaagactgcagctttcatttggccaatgctggtgcacatcatggaccagaag
gagctggagcagggagagggacccattgctgtggtcgtctgccccaccagagagctctgt
caacagattcattctgaatgcaagcgtttcggaaaggtgtacggcctccgctcggtggca
gtatatggaggaggcagcatgtgggaacaagccaaagcattacaggaaggagccgaaatt
gttgtctgcaccccaggtcgcctgatcgatcatgtgaagaagaaggctacatcactgcag
cgagtgacctaccttgtatttgatgaagccgatcgcatgttcgatatgggatttgaatac
caagtgagatccattgccagccatgtcagacctgatcgacagactctgttattcagtgca
acatttcggaagaaaatcgaaaagctggcgcgagatattttggtcgaccccattcgtgtt
gttcagggagacataggagaggctaatgaagatgtcactcagatagtggaggtgctgcag
tctgggcaggaaaagtggggttggctgacacgtaggctggttgagttcacctcagctggc
tctgtgctgatctttgtcactaaaaagactaactgcgaggagctggcaacaaatctgaat
caggaaggttatagccttgggctgctgcatggagacatggatcagagcgagaggaataaa
gtcattgctgactttaagaagaagaatctgcccgtattagtagctactgatgttgctgct
cgtgggttggatattccatctatccgtacagttgtgaactacgatgtagcacgagacatt
gacacacacacacatcgaattggtagaacaggtcgtgcaggagagaagggtgtagcttac
actctgctcaccactaaagatacttcatttgctggagacctggttcggaatttggaggga
gccaatcagagtgtttcgagggatctgatggacctggcaatgcagaatccctggttcagg
aaatcccggtttaagggagggaaagggaagaagctaaatattggaggtggaggcttgggt
tacagagagagaccaggccttggatctgaatccactgagcgcagtagtagtggtggtggt
gcttctcttggtaactatgaagcctacaaaccctccactggagccatgggagaacgtatg
tctgccctgaagcaagcatttcaggctcagtataaaaaccactttgtggcagcatctggt
gttcctcctaaactcaccacaaagtcgagcagctcctctgggtggaccagtgcaggaagt
ctaagttctttgccttcaggagcacctgaggggcctgacagaacccagctgtcctactcc
ccatcgtcctcttcctcctttatctccatgccaccaccccctgccctcagctcaggcacc
aaaatgagtggcttcagcagtgcaggctccctgagctcagtttcagactctaactctagc
tcttcttcaaaagaggggtcccgtagcgataggaatagtgacgacaggggtcgtcatcga
gatcgagagagtcattatcgtcacggtgacaggcatagtgggggagaccgtgatcgctat
ggggaaagggaccgccatagtgacagagatcgtcatggtgacaaccgaaacggtgaaggg
agtaatagggacagagagggacggtcagaaagagatgggggtgagaggtcggggactcat
aaagacagctttgtagttcctgatgcccccaaacgtaagaaaagcagatgggacaattaa
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