KEGG T07313: 113046190

Carassius auratus (goldfish): 113046190

Entry

113046190         CDS       T07313

Name

(RefSeq) DNA-directed RNA polymerase II subunit RPB4

K03012

DNA-directed RNA polymerase II subunit RPB4

Organism

caua Carassius auratus (goldfish)

Pathway

caua03020

RNA polymerase

caua03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:caua00001]
09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    113046190
  09124 Replication and repair
   03420 Nucleotide excision repair
    113046190
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:caua03021]
    113046190
   03400 DNA repair and recombination proteins [BR:caua03400]
    113046190
Transcription machinery [BR:caua03021]
Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     113046190
DNA repair and recombination proteins [BR:caua03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      113046190

SSDB

Motif

Pfam:

RNA_pol_Rpb4 Tfb4 Rop

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

Ensembl:

UniProt:

LinkDB

Position

27:complement(29088681..29091308)

AA seq 141 aa
MAAGGAAHVGDVEEDASQLMFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQELSEVF
MKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGR
FEDEELQQILDDIQTKRSFQY

NT seq 426 nt +upstreamnt +downstreamnt
atggcggcgggaggagcagcgcatgtgggggatgtggaggaggacgcgtctcagctcatg
tttcctaaagagtttgagaacgcagagaccctgctgaactcagaggtgcacatgttactg
gagcatcgcaagcagcagaacgagagcgcggaggacgagcaggagctgtccgaggtcttc
atgaagaccctcaactacacggccagattcagccgcttcaagaaccgagagaccatcgcc
agcgtgcgcagcttgcttctgcagaagaagcttcataagtttgagctggccagtttagcc
aatctgtgtccggaggcagctgaggaggccaaagcactcatccccagtttggaaggccgg
tttgaggacgaggagttacagcaaatcctggatgatattcagaccaaacgcagcttccag
tactga

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