Carassius auratus (goldfish): 113046808
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Entry
113046808 CDS
T07313
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113046808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
caua03041
]
113046808
03009 Ribosome biogenesis [BR:
caua03009
]
113046808
Enzymes [BR:
caua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113046808
Spliceosome [BR:
caua03041
]
Complex A
U1 snRNP components
U1 related factors
113046808
Complex B
113046808
Ribosome biogenesis [BR:
caua03009
]
Eukaryotic type
Pre-60S particles
Helicases
113046808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
BNIP2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
113046808
NCBI-ProteinID:
XP_026063609
Ensembl:
ENSCARG00000027931
UniProt:
A0A6P6JUQ7
LinkDB
All DBs
Position
28:12486991..12491746
Genome browser
AA seq
613 aa
AA seq
DB search
MPGYSDRDRGRDRGYSSGPPRFGGSRGGPPQGKKFGNPGERLRKKHWNLDELPKFEKNFY
QEHPDVARRTAQEVEHYRRSKEITVKARDGPKPIMKFHEANFPNYVMDVISKQNWTDPTP
IQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPGIVHINHQPFLERGDGPICLVLAPTREL
AQQVQQVAAEYGKASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQ
INVGALQLSANHNILQIVDVCNDGEKEDKLMRLLEEIMSEKENKTIIFVETKKRCDDLTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYDYP
NNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINPKLIQMAEDRG
GRSRGGRGGGYRDDRRDRHSGGRRDFNSYGQDNRNSDSYGQKKVFGNKTQNGSSGYNSSG
SSSFSSGGYSNNGQGNFGNQSGGYGNQGYQNQQFTPNQGAVQNSMNHPPPFPFNPQQMPQ
SMQFPMAPPAFPQ
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatactcagacagagaccgcggtcgtgacagaggatacagcagtggcccccca
cgctttggaggcagcaggggtggacctcctcagggcaagaagtttgggaatcctggtgaa
cgtctgcggaaaaaacactggaacctggatgagctccctaagtttgagaagaacttctac
caggagcatcctgacgtcgctcggaggacagctcaagaggttgaacactacaggagaagc
aaggagatcacagtgaaggctcgagacggtcccaaacccattatgaagttccatgaagca
aactttccaaactacgtgatggatgtgatcagtaaacagaactggactgatccgactccc
atccaagctcagggctggccagttgcactgagtggcaaagatatggttggcattgcccag
accggctctggaaaaaccctctcgtatctgcttcctggtattgttcacataaaccaccaa
ccattcctggagcgtggagatggacccatttgcttggtgttggctcccacccgtgagttg
gcgcagcaggtccagcaggtggcggcagagtacggcaaagcttctcgtctcaagtccacc
tgcatctacggaggcgctcccaaaggaccacagatccgggacctggaaaggggtgttgag
atttgtatagccacacccggaagacttatcgatttccttgaagttggaaagacaaatctg
cgcagatgcacgtatcttgtgcttgatgaagctgaccggatgcttgacatgggatttgaa
cctcagattcgaaaaatcgtggaccaaattagaccagaccgacagactctcatgtggagc
gctacatggcccaaagaggtgaggcagctggctgaggacttcctgaaggactatgtacag
atcaacgttggtgctctgcagctcagtgccaaccacaacatcctacagattgtcgacgtt
tgcaacgatggcgaaaaggaagacaaactgatgcgtctgctggaggaaatcatgagcgag
aaggagaacaagaccattatttttgtggagaccaagaaaaggtgtgacgatctcaccagg
aggatgcgtagggatgggtggccagcaatgggcatccatggagacaagagccagcaggaa
agagactgggtgctcaatgagttcaaatatggcaaagcgcccatcctcattgccacagat
gttgcctccagaggactagatgtggaagacgtcaaatttgtcattaactatgactacccc
aacaattccgaggactacattcaccgcattggccgtacggctcgcagtcagaaaaccggc
acggcctataccttctttacgcccaacaacatgaaacaggctcacgacctcgtctcagtc
ctccgcgaggccaaccaagccataaaccccaagctcatccaaatggctgaagacagagga
ggtcgttcaaggggtggtcgaggtggagggtatagggatgaccgtcgggatcgccactct
ggcggcaggcgggacttcaacagctacggccaggataaccgcaacagtgactcttatggg
cagaagaaggtgtttggaaacaaaactcaaaatggatctagtggttacaatagcagcggc
agtagcagctttagcagcgggggttacagcaataacggacagggtaacttcggcaatcag
tctggtgggtacggaaaccaaggctatcagaaccaacagttcactcccaaccaaggggcc
gtccagaacagcatgaaccatcctcccccgttccccttcaacccccaacagatgccacag
tccatgcagttccccatggccccacctgcgttccctcagtaa
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