Carassius auratus (goldfish): 113047800
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Entry
113047800 CDS
T07313
Name
(RefSeq) CCR4-NOT transcription complex subunit 4-like
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113047800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
caua03000
]
113047800
03019 Messenger RNA biogenesis [BR:
caua03019
]
113047800
04121 Ubiquitin system [BR:
caua04121
]
113047800
Enzymes [BR:
caua01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113047800
Transcription factors [BR:
caua03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
113047800
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113047800
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113047800
Ubiquitin system [BR:
caua04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
113047800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-C3HC4_2
zf-UDP
zf-CCCH_2
zf-RING_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
113047800
NCBI-ProteinID:
XP_026064882
Ensembl:
ENSCARG00000010133
UniProt:
A0A6P6K0Y9
LinkDB
All DBs
Position
29:894446..916786
Genome browser
AA seq
797 aa
AA seq
DB search
MSRSPEVKEDPMECPLCMESLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQKIKNEKKQKQNERKQKITENRKHLSSVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSTQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKTNPSFLQSSTGAGEKTKGKSGTSQSSSSNNKEAWPSLQTTGKTTNGLPEHYKTP
PLDGGSDSENMTPDGLDTELGLGSITGLPPFTSDCDPVSPTNRPTDSIGISNGETSQISG
KDSPSPPPGLSKPSLVVPLCVAGLTVRSPFEGAAAESQSLFSDNSNFRHPNPIPSGLSGF
SSSLHSNSDWPTAPEPQSLFTSDTIPVASSTDWQAAFGFGSSPKQQDDDLGFDPFDVTRK
ALADLIEKEHSVQDQASLPMTGTKSVPVFPHGPILGPPHNAPSMKVPLQLPTSSHFATNS
SLPSRGFSQLPHRPVYNSFSFPGQTQTSRHSWMGMPMRNNLPHLNHLGTPSTAQHSSYLD
LNLMPQQQHHHNIGLGGIHMTENSASVESLNVKEWQDGLRALLPNININFGGLPSSSSSS
SSSSSSSVNHTGGISHSLSWDGTTSWKDPAIITGIPASSGNSLDSLQDDNPPHWLTSLQA
LTEMDVPSGSTVPPQPQHNSPFGSQFPHRAGWSPYPTPAMANPATQFHSPPPGFQTAFRA
SAQASTDLLQSAGMDRH
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcagccctgaggtgaaggaggaccccatggagtgcccgctgtgcatggaatca
ttggagattgacgacgtcaatttcttcccctgcacctgtggctatcagatctgccgcttc
tgctggcatcgcatacgcacagatgagaacggcctctgcccggcctgcagaaagccctat
ccagaagaccctgcagtatacaaacctctctctcaagaggaacttcagaagataaagaac
gagaaaaagcagaagcagaatgagcggaagcagaagatcacagagaaccgcaagcatctc
tccagtgtgcgagtcgtccagagaaacctggtgtttgtggtgggcctttcgcagagactc
gctgacccagaggtcttaaaaaggccggagtatttcgggaagtttgggaagatccataag
gtggtcatcaataacagcacttcttatgctggctcacagggtcctagtgccagtgcctac
gtcacttacattcgatcagaagatgccctccgagctatacagtgtgttaacaatgttgta
gtagatggcagaacacttaaggcttctttaggtacaacaaaatactgcagttattttctg
aaaagcacgcagtgccccaaaccagactgcatgtatcttcacgagctgggagacgaagct
gctagtttcacgaaagaagaaatgcaggcagggaaacatcaggaatatgaacagaaactc
ttacaggagctctataaaacaaaccccagcttcctgcagagctcgacaggggcaggggag
aagacaaagggcaaatcaggcacatcacagagttccagtagtaacaacaaagaagcttgg
ccttcgttacaaaccacaggaaagacgaccaatgggcttccagaacactataagacccca
cccctagatggcggctcagactctgaaaacatgactccagacggtctggacacagaactg
ggccttggctccatcactggcctgcctcccttcacgtcagactgtgaccctgtcagccca
actaacagacctacagattccatcggaataagtaacggagaaacctcacaaatttccggc
aaagactctccatcgcctcctcctggcctgtccaagccgtctctagtggtgcctctctgt
gtagcagggctgacagtacggtcgcctttcgaaggagccgcagcggagtcacagtcgctc
ttttcagacaacagcaacttccggcaccccaatcccatccccagcggcctgtccggcttt
tccagttcccttcacagcaactctgactggcccactgccccagaaccacagagcctcttc
acgtcagataccataccagtggcatcctctacggactggcaagcagcctttggctttggc
tcttcgccaaagcaacaggatgacgaccttggctttgacccctttgatgtcacccgtaag
gcactggcggacctaatagagaaagagcactcggtgcaagaccaagcctccttaccaatg
accggcacaaaatcagtgccagtcttccctcatgggcctatactgggcccaccccacaac
gccccctccatgaaagtcccacttcagctccccacgtcctcacactttgccacaaactcc
agcttgccctcgcgggggttctcccagctcccacaccgccctgtctacaactccttcagc
tttcccggccagacgcagacctctcgtcacagttggatgggcatgcccatgcgcaataat
ctcccacatttgaatcacctcggaaccccctctactgcacagcacagcagctatttggac
ttgaacctgatgccacaacaacaacatcatcacaatatagggctcggaggtattcatatg
acagaaaacagtgcctcagtagaaagtctaaatgtgaaggagtggcaggatggactcaga
gcacttttacccaacatcaacatcaactttggtggactgcccagctcctcatcttcatct
tcatcctcctcctcgtccagtgtgaaccacacaggcggaatctcacacagccttagctgg
gacggcacaaccagctggaaggaccctgccatcatcacaggtatcccagcatcctcaggc
aacagtctagactctctgcaggatgacaatcctccccactggctcacatccttgcaggca
ctcacagagatggatgtcccttccggctccacagtgccccctcagccccaacacaatagc
cctttcggatcccagttcccccacagagctggctggagcccttatccaaccccagccatg
gccaaccccgccacccagttccactcacctcccccaggattccagaccgccttcagagcc
tcagcacaggcctccacagatctgctacagagtgctggcatggaccgacattag
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