Carassius auratus (goldfish): 113048513
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Entry
113048513 CDS
T07313
Symbol
rtcb
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
caua
Carassius auratus (goldfish)
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
caua03016
]
113048513 (rtcb)
Enzymes [BR:
caua01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
113048513 (rtcb)
Transfer RNA biogenesis [BR:
caua03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
113048513 (rtcb)
Prokaryotic type
tRNA splicing ligases
113048513 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
113048513
NCBI-ProteinID:
XP_026066158
Ensembl:
ENSCARG00000013831
UniProt:
A0A6P6K1X6
LinkDB
All DBs
Position
29:complement(6252521..6270910)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIHKNCWRIKKGFVPNMQVEGVFYVNDPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMDNPEAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQICVMIHSGSRGLGHQVATDALVAMEKAMKRDNILVNDRQLACARITS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDMHVIYDVSHNIAKVEE
HMLEGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVDTCHDAGISRKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctcttataacgacgagcttcagtatctggataaaatccacaaaaactgctgg
cggatcaagaagggcttcgtgccgaatatgcaggtggagggggttttctatgtgaatgat
cctctggagaaactcatgtttgaggagctgaggaacgcctgtcgtggtggagggttcggt
ggtttcttgcctgctatgaagcagattggaaacgttgccgctttgccaggaatcgtacat
cgctccatcggtttgcctgatgtccactccggatacggttttgcaatcggaaacatggca
gcgtttgacatggacaacccagaggccgtggtgtctcccggtggcgtggggtttgacatc
aactgtggcgtccgtctgctgaggacgaacctggacgagggagacgtgcagccggtcaaa
gagcagctggcacagtccatgtttgaccacattcccgtcggagtcggatccaagggcgtc
attcccatgggagcaaaagatctggaggaggctctagagatgggtgtggactggtctctg
agggaaggatacgcttgggccgaggataaagagcactgtgaggaatacggccggatgctg
caagccgatcccaacaaagtctcgtccaaagccaagaagagaggactgccacagctgggg
acgctgggagctggaaatcactacgccgagattcaggtggtggatgagatctacaacgat
tacgccgccaagaagatgggcatcgaccacaaggggcagatctgtgtgatgatccacagc
ggcagtcgaggcctcggccaccaggtggcgacagatgctttggttgcgatggagaaggcg
atgaagcgggataatatcctcgtgaatgaccgtcagctggcctgcgctcgcatcacgtct
cctgagggtcaggactatctgaagggcatggcggccgccggcaactacgcctgggtcaac
cgctcctccatgaccttcctcactcgacaggccttctctaaagtcttcaacactacacca
gacgatctggacatgcacgtcatctacgacgtctcgcacaacatcgccaaagtggaagag
cacatgctggagggcaaacagaagacgcttctcgtgcacaggaagggctcgacccgagcc
ttcccgcctcaccatccactcataccggtggactatcagttgaccggtcagccggttctg
atcggaggaaccatgggcacctgcagctatgtgctgacggggacggagcagggcatgacg
gagacgttcggcaccacgtgtcacggcgcgggtcgagctctgtccagagccaagtccaga
cgcaacctggacttccaggacgttctggataaactggcagacatgggcatcgctatcaga
gtggcgtcacccaagctggtgatggaggaggctcctgaatcctacaagaacgtgacggat
gtagtggacacgtgtcacgacgctggcatcagcaggaaagccatcaagctcagacccatc
gccgtgattaaaggctga
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