Carassius auratus (goldfish): 113051392
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Entry
113051392 CDS
T07313
Name
(RefSeq) collagen alpha-6(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
caua
Carassius auratus (goldfish)
Pathway
caua04382
Cornified envelope formation
caua04510
Focal adhesion
caua04512
ECM-receptor interaction
caua04518
Integrin signaling
caua04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113051392
04518 Integrin signaling
113051392
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113051392
09142 Cell motility
04820 Cytoskeleton in muscle cells
113051392
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
113051392
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
caua04147
]
113051392
00536 Glycosaminoglycan binding proteins [BR:
caua00536
]
113051392
Exosome [BR:
caua04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113051392
Glycosaminoglycan binding proteins [BR:
caua00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113051392
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113051392
NCBI-ProteinID:
XP_026070889
Ensembl:
ENSCARG00000010866
UniProt:
A0A6P6KEY9
LinkDB
All DBs
Position
32
Genome browser
AA seq
1705 aa
AA seq
DB search
MKLWSFVLPVVLYAVSAQGNQKSPAPSAAATTASPGPNLGSKLQEPCAGRDCSGPCPCLP
LKGSRGQHGEHGQMGSSGPEGVIGSPGPVGPKGENGHVGRKGPPGPNGDKGPMGVPGFSG
NDGVPGHPGQEGPRGPPGLDGCNGTRGDPGDRARDGVPGLPGGPGLAGRKGQKGEPYYMD
LSELNSFIKGPPGPMGFSGALGPRGPDGFPGVPGPPGPPGPPGSPGQGYKGEPGEKGDLG
PAGLRGSPAVQFNAPAISTIYKGEKGDKGYGGTPGFPGGPGPPGPFWYRGETGEKGILGL
PGLRGPPGLNGPPGLPGIKGFPGPQGFLGQPGFTGTKGDRGDPGPPGPIVEPEAGIKGPP
GDPGFPGYPGITGDTGVPGLPGLPGAPGVPAFLTGRPGNPGFPGSRGPKGQRGNPGQNSY
GLEGLPGNQGLPGPPGLPGPPGRKPNPSSAGQPGFPGRPGPRGFPGDRGFKGFKGENGDC
NCLGGGTIGAQGPQGSPGSPGIAGLNGVKGEIGDAGFPGPRGPQGLDGRAGDRGFRGRKG
EKGNTFFPEGRGQKGDMGQRGPPGPLGESGNTGRDGSPGFPGQPGPPGEPGFGVTGDKGF
PGFPGSKGRPGDRGVPGIGYPGVAGIKGSQGDPGFNGLPGTPGPPGSPGDSCGRAGLYGA
SLEEGGTPLPCRIPGELGDQGYSGNPGVPGPKGQSGYPGGRGRSGFDGPKGERGEPGSGG
RPGPQGFPGPRGDPGLPGTTNAGFQGPPGRDGLPGLPGAKGEPGVVLGATPGGPGSPGRP
GQPGDKGQPGAPGLSGRPGNDGQNGYPGIKGERGVDGIPGPVGPIGPPGEIPAGGVPGPR
GPPGAKGFDGSPGCQGFPGLKGVRGDPGPPGPGGIKGIPGLPGIPGSQGFRGPPGPPGIG
TRRGIPGRPGIKGEKGSLGLVGFPGFPGSPGVQGGPGVKGVPGFTGQDGVPGGTGSRGTK
GDRGVPGLPGPSPPSIPANQLLKGERGDPGGQGLPGFPGPRGDKGYPGLPGREGYPGSPG
VADQAKGFPGQPGLPGIPGSFGFPGPKGSSGVMGFPGLPGMRGDDGLPGVQGFPGTSGQP
GGKGEKGDSYELSGPPGQKGLIGNRGFPGGPGLPGETGDPGLPGVLGFQGQKGFPGEPGA
PGFGGSPGLPGIRGLPGYPGQKGRDGVPGRPGAPGSSGEKGFPGSPGLHGLNGLPGSKGL
SGVPGVTEGGRTGAPGVNGLKGERGSSQPGAPGRPGEKGSRGDPGASGSRGFAGNPGPPG
PPSPSNIPGPPGDSGLPGLDGREGPFGPPGRPGPPGPGTVQGDRGDDGYPGRPGIPGPRG
EPGGFGAPGMQGSPGFKGQKGDPGFDGVLGSPGSPGEPGYFGRNGPKGLKGIPGRKGIPG
TVFPLNITERMPYGEQGPQGLDGSDGQAGMPGIPGRPGVPGPKGPRGPMGRLGPVGAAGS
PGTFGDPGPPGIQGPTGSQGARGSPGMQGRPGPPARSSSIGYTLVKHSQSSQVPMCPQGM
SRLWDGYSLLYVEGQEKAHNQDLGLPGSCLPHFSTIPFLYCTVDEICHYASRNDKSYWLS
TTAPIPMMPVADQQISPYISRCSVCEAPSQAIAIHSQDLSIPTCPQGWRSLWIGYSFLMH
TAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAHGTCHYFANKYSFWLTIVEQNKQFIHA
PSQETLKGVEYRSLISRCQVCMKIL
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atgaagctttggagttttgtgttacctgttgtcttgtatgcagtgtctgcacaagggaat
caaaagtccccagctccttcagcagcagcaactacagcctccccaggtcctaatctggga
tcaaagctgcaggagccgtgtgcaggcagagactgcagtggaccgtgcccgtgtttgccc
ttaaagggtagcagggggcaacatggggagcatggacagatgggcagcagtggtcctgag
ggtgttattgggtccccagggccagttgggcccaaaggagaaaatggccatgtaggacgt
aaaggccctcctggaccaaatggagataagggcccaatgggtgttcctgggttttctggt
aatgatggagttccaggacaccccggtcaggaggggcccaggggacctccaggcttggat
ggctgtaatgggacacgaggtgacccaggtgacagagcccgtgatggagttcctggtctg
cccgggggtcctggactcgctggtcgaaaaggtcaaaaaggagaaccatattatatggat
ctttctgaactaaattctttcatcaaaggccctccaggtccaatgggattttcaggtgca
ttgggacccagaggtccagatggatttcctggtgtgcctggtccacctggtccacctgga
cctccaggaagtccaggtcaaggatacaaaggagagccaggagaaaagggggatcttggt
ccagcaggactcaggggcagtccagccgttcagtttaacgcaccagcaataagcactatc
tacaaaggagagaagggtgataaaggctatggtggtactccaggttttccagggggacca
gggccaccaggcccattttggtatagaggtgaaaccggagaaaagggaatcctgggctta
ccaggcttaaggggtccacctggtctgaacggtcctcctggccttcctgggataaaaggc
ttccctggacctcagggttttctgggacaaccaggttttactggcacaaaaggtgacagg
ggagacccaggtccacctgggccaattgtggaaccagaagctggaattaaaggtcctcca
ggtgatcctggctttcctggttatccggggataacgggagatacgggtgttccagggctt
cctggtctgcctggtgctcctggagtgcctgcttttttaacaggtcgtccaggcaatcct
gggttccccggtagtcgtggacccaaaggacaaaggggaaacccaggtcagaattcttat
ggtcttgaaggtcttcctggaaatcagggccttcctggacctccaggtctccctggacca
ccgggcaggaaaccaaacccgtcctccgctggacaacctggttttccaggtcggcctggt
ccaagaggatttcctggagacagaggctttaaagggtttaaaggagaaaatggtgactgc
aactgtttgggtggaggaacgattggtgcacagggacctcaagggtctccgggttccccg
ggtattgcaggcctcaatggtgtgaagggagaaattggtgatgcaggcttcccaggaccc
cgaggtccacaaggccttgatggtcgtgcaggtgacagaggctttaggggtcgtaaagga
gagaaaggtaatactttcttcccagaaggtagaggacaaaaaggtgatatgggtcaacgg
ggtcctcctggaccacttggagaaagcggtaacactggaagggatggatctcctggcttt
cctggacaaccaggcccacctggggagcctggttttggggtgactggagataaaggtttt
cctggttttccagggtccaaaggtcgtcctggtgacaggggtgtacctggtattggctat
cctggtgtagctggaatcaaagggtcacaaggtgatcctggattcaatggtcttcctgga
acacctggacctccaggttctccaggtgacagctgtgggcgggcagggctttacggtgcc
tctttggaagagggaggaacaccacttccctgcaggattcctggtgaacttggagatcaa
ggatactctggaaatcctggggtgccaggaccaaagggtcagtctggttacccaggaggg
agagggcgctcagggtttgatgggccaaagggtgagagaggagaaccaggctctggaggt
cggccaggacctcagggtttccccggacccagaggagatccaggtttaccaggaacaact
aatgctggctttcaagggcctccaggaagagatggtttaccaggtttgccaggagctaag
ggagaacccggtgtggtccttggagccacccctggaggtccaggttctccagggagacca
ggacaaccaggagacaaaggtcaacctggtgcacctggtttatcagggaggcctggtaat
gatggacagaacggttatcctggcataaagggagaacgaggtgtggatggaatacctggt
cccgtaggtcccataggtccaccaggagaaatccctgctggtggtgttcctggtcccaga
gggccacctggagctaagggatttgatggatctccaggctgccaaggtttcccagggctg
aagggtgtgagaggagatccaggacctccagggcctggtggaataaagggtataccagga
cttcctggcatcccagggtcacagggattcaggggacctcctggaccccctggcattgga
acacgtcgaggcatacctggaagaccaggaataaagggggagaaagggtctcttggattg
gtggggttcccaggatttcctggttctcctggcgtccaaggtggcccaggtgttaaaggt
gtacctggtttcactggacaggatggtgtacctgggggaactggatcaagaggaaccaaa
ggggatcgtggtgttcctggtcttccaggaccttctcctccatcaattccagcaaatcag
ctgttaaagggtgaaagaggtgacccaggaggtcaaggactgcctggtttcccaggacca
agaggtgataagggttatccagggcttcctggacgtgaaggctatcctggatcacctggt
gttgcagaccaagcaaaaggttttcctggccaaccaggactcccaggtattcccggctcc
tttggctttcctggacccaaaggttcatctggagttatgggcttccctggcttaccaggc
atgaggggtgatgatggtttacctggtgttcaagggttcccaggcacttcaggacaacct
ggtggcaaaggtgagaaaggtgattcatatgaattatctggaccccctggacaaaagggt
ttgattggaaatcgcggattcccaggtggtccaggacttcctggtgaaacaggtgatcca
gggctcccaggagtcttgggattccaaggccagaaaggttttcctggagagccgggagca
ccaggatttggtggctcaccaggcctcccaggcattaggggtctgcctggttatccagga
cagaaggggcgtgatggagttccaggccgtcctggagctccaggttcatcaggagagaaa
ggttttccaggatcacctggtttacatggactcaatggtcttccaggatccaaggggctg
tctggtgttccaggtgtgactgaaggtggtcggactggagctcctggtgtgaatggcctg
aagggagagagaggctcatcacaacccggagcacctgggcgcccaggagaaaaaggatcc
agaggagaccctggtgcctctggttcgagaggcttcgctggtaatccaggaccccctgga
ccccctagtccttctaatatcccaggtcctcctggagactccggacttccaggattagat
ggacgagaaggtccttttggccctcctggccggcctggtccaccaggccctggaaccgtc
caaggagacaggggggatgatggatatcctgggcgaccagggataccaggaccacgtgga
gaacccggtggttttggagcccctggaatgcaaggcagtcctggttttaaaggacaaaaa
ggtgaccctggctttgatggtgtacttggatcaccggggtcacctggagaaccaggatat
tttggcaggaatggacccaaaggattaaagggtattcccggtcgtaagggaattccaggt
actgtgttcccacttaacataaccgaaagaatgccatatggggaacagggcccacaaggt
cttgatgggtctgatggtcaggcaggaatgccaggcataccaggccgtccaggagtccct
ggtcccaaaggacccagagggccaatgggtagacttggtcctgttggtgcagctggatct
cctggaacttttggtgaccctggacctccaggaatccaaggacccacaggaagccaagga
gcgcgtggctcaccgggaatgcaaggtcgtcctggtccaccggcgcgcagtagcagtatc
ggttatactttggtgaaacacagtcagtccagccaggtgcccatgtgtcctcaaggcatg
tccaggctgtgggatggatacagtttgctctatgtagaggggcaggagaaagcacacaac
caggacctgggattgcccggctcctgcctgccgcatttcagcaccatccccttcctgtac
tgcacagtcgatgaaatctgccactacgctagtcgcaatgacaaatcctactggctatcc
accacagcacccattcccatgatgcctgtggcagatcagcagatatctccatacattagc
cgctgctcagtgtgcgaggctccatctcaagctatcgctatccatagccaggatctcagc
ataccgacctgccctcagggctggagaagtctgtggattggttactccttccttatgcac
accgccgcaggtgccgaaggaggcggtcagtcattggtgtctcccggttcttgtctggag
gatttccgtgccacccccttcatcgagtgcaacggtgcccacggcacctgccactacttt
gccaacaagtacagcttctggttgacaatagtagagcagaacaaacagttcatccatgct
ccttcccaggagacgctgaagggagtcgagtaccgctcactcatcagtcgctgtcaagtc
tgcatgaagatcttgtag
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