Carassius auratus (goldfish): 113052267
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Entry
113052267 CDS
T07313
Name
(RefSeq) focadhesin-like
KO
K27498
focadhesin
Organism
caua
Carassius auratus (goldfish)
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113052267
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113052267
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
HEAT
Motif
Other DBs
NCBI-GeneID:
113052267
NCBI-ProteinID:
XP_026072470
Ensembl:
ENSCARG00000014867
UniProt:
A0A6P6KJM8
LinkDB
All DBs
Position
32:complement(33738079..33779072)
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AA seq
1807 aa
AA seq
DB search
MTEILKSRFEFPSSLIQAQAVRTLVTAVLKEKGQNERICQTTAKGQSLESLWEQCSSDST
VVRSACCDALVLLVEQGHADLPYVLNTTLNLLPSARNVQGLIKVVGRLLQIQASQRDNGA
SFTCPYSIRTFPHPYITVLENRPDCWPALLQEIDDFLQLAMDKDEPVYVKMLVPFLRYLY
CEPQRLSENALLRHSLLRVLLQPRGVPEPDSLQEKGASGTRVVRELIQSLFDLLPYMLVD
SVTAVVEFSSFAESLTSALLIDPGFWRKELTQLTLQLLCACQLSLHLGGELMSLLHTLHQ
IIPAHAEELPPEQVIMGISLLLLSASTSQQTALLELAVKIVPPELPPPWGASLLVMPLLQ
VLSCSSLMEALTDTQTHTKNLELTNSLLQRVQREASDRREDSTQLSLPLSTWYSELQVAT
SVLHRISVDSIASMEWLYSLQSSLSVCEHVPDSVCLLVSHVIVSSHGDLCRLALDTAAAI
AEADPAKVPCFLPVLMFKLGRVSDPALSHSVLYTLPKLGTHKFCIPQVLHVLQTLGSSSR
LRPVALRLLALLWKKQDRVYPDLQRLMSQLEKSSVVLGKNTQWEQILARAACIRDICRER
PYQHGGDMLAAISDTLMQFSRKDQATPAALALQGLQELCRAEVVDIISTWKALSPKLCCD
TRPLVLKATAELLALVPTLNVKTEEYEKFRNEAVCVLWGYALSQDPEVASPGFKALSEYP
EPSHTILHLPEQIRPVPKQPEEEDEGKENENEKEEDVSVPGTSYVKLVRLTPRSVLPALE
TFLTALVRQEMNQMPRGVYHSALIGVNLRSDQGKTVSGIPSFMLKTYEKNKQPGLKPGLA
AGLLLCYDLPVQTDKDGHPITRFLVSRGRSYQQMLATLIHEVNIQPSEWHRSLLLPQAWR
GFMSRAYHAALKGRKAELEMLQKQGKESPEELQYKQHYAWLWVRDQLTDVVKSAAKDSPV
VQGNSILALSGLAVVLTRYESNLPTQSESGLEVGPDFLPTVHWLTMVIDTLLSIVSSNSN
PKAQVFPWFIHRSYSGENTASVIARSCAALGLALLVPVLVTSCKKNIPAILGTLEAGLPG
SPSADESQALQFHSGLALGMFLAWLHDERVSDISGQSVAELLVKHLERLEDCCFNPNLEY
NAGCVLGVGLVLSSLSSSSQSERDGVHVSLTLDRLLQSLQDSSNMSRMQQEVLAYSVACV
AVSAFSAGIIEASKAEESMNTLRTLTEESQQTPGFALALGLTVFGLSSFGHGKAVDIQPR
LLAAWTKILLAEGCPTMQRLSALNGLIALVGSEMALIQMKSESEESSQQQSRLNEVIRAI
TQIITFSGTIGLQSNGACLLGHLHLAHMSSSHSRTAVPQDFGYLPEKSVIRASVDFITEA
GRKGPEFTPPHLVKTVLAALVTVGGSFQYPPVNWSAILSPLMRLGFGEEVQHHCLALAAS
QAQSSQSAALFLGIWLVPPLVHSLSMHSRASLYECLNSWMKHVAEDKLQVYVDSLAIQQF
VPDTRPQRLPLCLSILRGLSKAMAVPNPPQNCWTALCSTTEKIYNLLPDNIPAGEVHLYE
AMCSCLSELSDTEIDRILKVTEANVEKTAFILCYLTSKGRVPLLGLNDVISTILQVGNKK
RISWLLLQALHQSRFASSPSTGVSKRMEWLLELMGHIRNVAYGSPSVKCVSVIEGTDFLL
GVFAAAVVSWADHCAPLLIGIRAQWFPWEQSSLTTDLSHDLCVNPAITELSVASCLLAIP
CSMKKLLCKEPWKSQSQKFIDWLFSITEGPKLGFSETALLTAKATLMALRSSSEFKKKGV
WTRAYGW
NT seq
5424 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaattttgaagagcaggttcgagttccccagctccctcattcaagcccaggct
gtgaggacactggtcactgcggtgctgaaagagaaaggccagaatgaaaggatttgtcag
acaaccgctaaaggtcaatcgctggagtctctgtgggagcagtgcagcagtgacagtact
gtcgtccgctcggcctgctgtgacgctctggtgctgcttgtagaacagggacatgcagat
ctgccatatgtgctcaacaccacccttaacctcctgccctcggcacggaatgttcaaggg
ctgatcaaagtggttgggaggctgctacagatccaggcaagtcagcgggataacggagca
agcttcacctgtccatactcaattaggaccttccctcacccctacattacagtgctggaa
aaccgccctgactgctggcctgctctgctccaggaaattgatgacttccttcagctggct
atggacaaagatgagccagtatatgtgaaaatgctggttccgttccttcgttacctgtac
tgcgagccccagaggttgtcagaaaacgctctgcttcgacacagcctcctcagggtcctg
ctccaacctcgaggggttcctgagcctgacagcctgcaggaaaagggggcgtctggcact
cgggtggtccgtgagctaatacagagtctctttgacctgcttccatacatgctggtggac
agtgttaccgcagtggttgagttcagctcatttgctgaatctctgacatcggctctgctc
atcgatccaggcttctggaggaaggaactgactcagctgacacttcagctcctgtgtgcc
tgtcagctgagtcttcatctgggaggagaactgatgtctctccttcacacactccaccag
ataatacctgcacatgcagaggaactcccgcctgagcaagtgatcatgggaatctccctg
ctactgctaagtgcctccacctctcaacaaactgccctcctagagctcgctgtaaagatt
gtccctcctgagcttccacctccttggggtgcatctttgctggtgatgcccttgttacag
gtgctgtcctgctccagcctcatggaagccctgacagacacacagacacacacaaagaac
cttgaactgaccaattcactgttgcaaagggttcaaagagaggcctcagatcgaagagag
gactccacacagctgagtttgcctctcagcacttggtacagcgagcttcaagtggccacc
agcgtcctgcaccgaatttccgtagactccattgcatccatggaatggctttactccctg
cagtcatcactctctgtctgtgaacacgtcccagatagtgtttgtctcctggtgtcccat
gttatcgtcagcagtcacggggatctctgcaggttagcgctggacactgctgctgccatc
gccgaggctgaccctgctaaggtgccatgtttcctccccgtcctgatgtttaaactgggc
agagtctctgatccggctttgtctcactctgttctctacactctgccaaaactgggaacc
cacaagttctgtatcccgcaggtgcttcatgtcctccaaactctgggcagttcatccaga
ctgaggcctgtggcgctgcgcctcttagctcttttatggaaaaaacaggaccgtgtgtat
ccggacctgcagagactgatgtcacagcttgaaaaatcatcagtggtcttgggaaaaaat
acgcagtgggagcagatattggctagagcagcctgcatcagagacatctgcagagagagg
ccgtaccaacatggaggagacatgctggctgccatcagcgacacactgatgcagttctcc
aggaaggaccaggccacccctgctgctctggcactgcagggcttacaggagctctgtaga
gctgaggtagtggatatcatctccacatggaaagccctctctcctaagctgtgctgtgac
accagacccctggtcctaaaggccacagctgaacttctggcattagtacctactttaaac
gtcaaaactgaagaatatgagaagttcagaaacgaggcagtctgtgttttatggggctac
gcacttagtcaggacccagaggttgcaagcccgggttttaaagctctctcggagtaccct
gaaccgtctcacaccatcctacacttgccagagcagatcagacctgtaccaaagcagcct
gaagaagaggatgaagggaaggagaatgagaacgagaaggaggaagatgtttcagtgcca
gggacgtcatacgtgaagctagttcgtctcacaccacgatctgttttaccagcccttgag
accttcctaacggctctagtacggcaggagatgaaccaaatgccccgtggcgtgtaccat
tcagctctgattggggtgaatttgcgctctgaccagggaaaaactgtatctggaattcct
tcttttatgctgaaaacatatgagaagaacaagcagcccggtctgaaacctggcttagca
gctgggcttctactctgttatgaccttcctgttcaaactgacaaagatggacatccaatc
acacgatttcttgtcagcagagggcggagttatcaacaaatgttagccacccttattcat
gaggtgaacatccagccgtctgaatggcatcgttctctgctcttgccccaggcctggcgg
ggcttcatgagccgggcttaccatgcagctctcaagggtcgaaaggcagagctggagatg
cttcagaagcagggtaaagagagcccagaggaactgcagtacaaacagcactatgcctgg
ctctgggtcagagaccaactgacggatgtggtcaaatctgccgccaaagatagtccagtt
gttcaaggtaattctatcctggcactaagtggcctggctgttgttttaaccagatatgag
agcaacctccctacacagtctgaaagtggacttgaggtgggtccggacttccttcccaca
gttcactggctgacgatggtgattgacacactgctcagcattgttagcagtaacagtaac
cctaaagcacaagtcttcccatggttcattcatcgctcatactcgggtgagaacacagcg
agtgtgatcgcgcgctcctgtgctgctctggggctggcgttgttggtgccggtgctggtg
acctcgtgcaaaaagaacattcctgctatactgggcaccctagaggcgggactgccaggc
tcgccctccgcagacgagtctcaggcactccagtttcacagcggcctggctctgggcatg
tttctagcctggctgcatgacgagagagtcagtgatatatctgggcagtcggtagcagag
ctgctagtgaaacatctggaacgactggaagactgttgctttaatcccaatctggagtac
aatgctggttgtgtgttaggtgtggggttggtactcagttctctcagtagcagtagtcag
tctgagcgggacggtgtgcatgtgtctctaacgctggacagactcctgcagagcctgcag
gacagcagcaatatgagccgcatgcagcaggaggttttggcctattctgtggcgtgtgtt
gcagtttcagcatttagtgcaggcattattgaggccagcaaggctgaggaaagcatgaac
acactgcgcactctaacagaggaaagccaacagacaccaggctttgctttggcattgggt
ctcacagtgtttggactctcttcttttggtcatggtaaagcggtagacatccagcctcgt
ctgctggctgcctggaccaagatactgctggcagagggttgtcccacaatgcagaggctg
tctgccctcaatggactgatcgcattagtgggatcagagatggctctcattcagatgaag
agtgaatctgaggagtcctcacagcagcagagcagactgaacgaggtcatccgagccatt
acacagatcatcactttttcaggaacaataggtctgcagtctaacggagcatgtctgctt
ggacacctgcatctggcccacatgtccagcagccacagtcgaaccgcagttcctcaggac
tttggttatctcccagagaaaagtgtcatccgagcttcagtagacttcatcaccgaagcg
ggaagaaaaggacctgagttcactcctccacacctggtgaagacggtgctggcagcgtta
gtgacggtcggtggaagcttccagtatcctccagtcaactggagcgccatcctctctccg
ctgatgagactcggctttggagaggaagtgcagcatcactgtttagcgttagctgccagt
caggcccagtcttcccagagtgccgcacttttcctcggcatctggcttgtgcctcccctg
gttcacagtctgagtatgcactccagggcttctctgtacgagtgcctgaactcctggatg
aagcacgtggctgaagacaaactccaggtgtacgtggacagtctggcaatccagcagttt
gtgcctgacacacgtcctcagcgcctgcccctgtgcctgtccatcctgcgtgggctgtcc
aaagccatggcggtccccaacccgccccaaaactgctggactgccctgtgctccaccact
gaaaagatctacaacctcttacctgataatatccctgctggtgaggtgcacctgtatgaa
gccatgtgttcgtgtctgtctgaactgagcgacactgagattgaccgcatacttaaagta
actgaggctaatgtggaaaaaacagctttcatcctctgctacctgacctctaaaggcaga
gtccctctgctcggactcaatgatgtcatcagtaccatcctccaggtggggaataagaaa
cgaatcagctggcttctcctgcaggccctccaccaatcacgcttcgcctctagtcccagt
acaggggtctctaaacgaatggagtggcttttggagttaatggggcacatcagaaatgtt
gcatacggatctccttctgttaaatgtgtcagtgttatagagggaacagacttcctcctc
ggtgtgtttgctgcagcagtggtgtcttgggctgatcattgtgctccgcttctcattgga
atcagggcccagtggtttccctgggaacagtcctctctgacaacagacctgtcccatgac
ctctgtgtcaaccctgctatcacagagctgtcggtcgcgtcatgccttcttgcaatccca
tgcagcatgaaaaaactactctgcaaagagccgtggaaatcccagtcacagaagttcatc
gactggctcttcagtattacagaaggtcctaaactaggtttctctgagactgccttactt
acagccaaagcgactctaatggctctgagatccagctctgagttcaagaagaagggtgtg
tggaccagggcgtatggttggtga
DBGET
integrated database retrieval system