Carassius auratus (goldfish): 113053297
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Entry
113053297 CDS
T07313
Name
(RefSeq) collagen alpha-3(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
caua
Carassius auratus (goldfish)
Pathway
caua04510
Focal adhesion
caua04512
ECM-receptor interaction
caua04518
Integrin signaling
caua04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113053297
04518 Integrin signaling
113053297
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113053297
09142 Cell motility
04820 Cytoskeleton in muscle cells
113053297
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
caua04147
]
113053297
00536 Glycosaminoglycan binding proteins [BR:
caua00536
]
113053297
Exosome [BR:
caua04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
113053297
Glycosaminoglycan binding proteins [BR:
caua00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113053297
Hyaluronan
Extracellular matrix or blood plasma proteins
113053297
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_4
fn3
Motif
Other DBs
NCBI-GeneID:
113053297
NCBI-ProteinID:
XP_026073992
Ensembl:
ENSCARG00000013588
UniProt:
A0A6P6KS39
LinkDB
All DBs
Position
34:complement(16060627..16099558)
Genome browser
AA seq
3207 aa
AA seq
DB search
MGKSRLLLFALWGVLVFGLFPNLEAQDAPSTANLVFLIDGSESVGAANFPLVRDMVVQLI
EGLAIGRDAIRVALVVYGAVPEIQFNLNSYDNKESVLSAIQRINYPGGNEANLGAALKEV
ADSVLGQDAGSRAEEEVPQMLVVISAGESTDDVSQGSRALMQASVYTFGIAVGDSATAQL
EAIATHKNLFLSAPDAREMASIGDKILPYINGIAERTIVIQTEFTEALAVGKRDIIFLID
SSMGTVVINAVREFIKRFIDTMPIGPDQVQVGVAMFSTTPRMEINLNSFSSKESLISALA
RIKPRPSNEVNIGAALNFVRTEMLTAESGSRIDDQVPQLVLLLTSKKSKDSVQQPADDLR
QRGVLTLAAGLKAANEAELQQIAIDESVVFMLKDFRVLLRNPKEIISPLSTLAGVVVEEI
PTESEPVVDVTTVHTQRIVRDIVFLVDGSNYVGNNLQSVLEFITEVVDKLDVRPERVRIG
LIQFAETQHTEFFLNTHKTKQDVLSAIAQLRLRGGRALNTGAALQYALTNHFQPAVGSRR
REGVQQVLVLITGGPSQDEVKRIADRVAVEGVLTFAVGAGQVEDRFLKTVAFVEDLAYYR
SNFADLSSVVDEIMSPLVTVVGTTDTLEVTEQPGPSGGERDVAFLIDGSDDVRSDFPYIR
DFITKVLEPLDIGFDKVRVSLVQHSERPSPYFYLNTYQTKDEVLRAVSGLSPAGGRSLNT
GAALTFMKNTILSPANGGRAGYNVPQFLIVLTGGRSRDSVREPAVALKTEGVVPFGVGVK
NADPKQIEAISHNPSFAFIVNEFNELNTVQEKLKNYVNLPDQELKVILDTATEQPGPSGG
ERDVAFLIDGSDDVRSDFPYIRDFITKVLEPLDIGFNKVRVSLVQHSERPSPYFYLNTYQ
TKDEVLRAVSGLSPAGGRSLNTGAALTFMKNTILSPANGGRAGNNVPQFLIVLTGGRSRD
SVREPAVALKTEGVVPFGVGVKNADPKQIEAISHNPSFAFNVKEFRELSTVQEKLKNYVN
LPDQELKVILDKAESEGPKKDIIFVIDGSEGVGREFPIIQEFVRRVVENLNVGENKIRVG
VVQYGDTPYADIYLNSHRTKEGVLNGIKELRQRGGRQRNLGRAIDFVSREVLTSGRGGRK
QEGVPQFVVVISGGKATDNIRPYATVMKQSGVVPFSIGTRDMDPQELQVTSYVPRFAYTV
DDLPGLYTIQDTLITTLTELSSEELAKLRPVYPTETVIPVPRGDKRDVVFLIDGTTKMRT
EFPAIRDMVYRVVDKLDVGPNNVRVSVVQYSDDPKLEFLLNEHSTKEEVHQAIRRMRSKG
GNQLNTGQALEYVSNNIYQRSAGSRAEEGVPQFLILVTGGKSNDDVSGPANQLKSSLVAP
LAVGGHNADEEELKLISFSPELTFTIRDFQQPQEVEQQLLTKVSTMSRDEISAPTVHKVS
LNLGKKDIIFLIDSSDSAGQGGVAHIRDFILKVVDQLDVRPDQVRVALVQYGERPQTEFS
LNSHDNKQSVISAIKRLRHMGGRGADLAEAIKYVIRNELTETAGVRPSDASQHLVVLTGG
RSTSDVSTYGQVLKGSGIKCIGIGAENADPRQLEQITTTSDDVLRVATFPNLPNIEGKFI
ARLNGTIKDEPPTDFEDIGPAPPQVKAADIVFLVDGSINLGKDNFKEVMEFILNLIDLFF
SERDNLQFGLAHYATDVTNEFYLNTYKNKDDIIDAITRVEYKGGREIKTGNAIRYVQKTH
FVKARGSRKDEGIPQILMVVTGGRSRDDSKSAALALKASGVRIYAVGVGNFEDELKNLGS
ASTTVAQASTFQELSELNEQILQALEDDVIIKSCHGVKDITRECKLDVLVGFDVASQNIF
AAQRSLEKKVASILKHITQMQPISCTSGQVPSIQVGMLAMDSASEPVQMDFTNRYTELLE
PFKALRNRGPFVLNGATIKAYADRFKSQPSDSVKVVIHLTDGLDAQYNILKERVDLMRSA
GVSSFILVALERVPQFEEAVLLEFGRGFRYTRPLRVNLLDLDYELLEELDNIAERECCSV
PCKCNGQRGDRGAVGVSGPKGKSGGQGFSGHPGDEGGPGERGPPGINGTQGFQGCPGQRG
IKGSRGYNGEKGENGEIGLDGINGEEGTSGVVGPPGDRGNPGERGPKGAKGQAGDVGQTG
IRGDPGIPGRDNNQRGPKGDPGDAGPPGEPGVDGNKGGAGEPGRQGPDGRRGPPGQAGAP
GKPGSDGLPGERGIGGSRGPTGPIGAPGLRGEDGNPGPRGPGGLPGTAGEKGRRGTVGRK
GEPGEPGPKGVVGPLGPRGEPGEDGRDGFGTPGPKGRKGDEGFPGFPGPKGEAGDPGSKG
GPGPRGNNGQRGTSGESGGPGQKGDTGYPGPHGERGSRGTGPVPCDLVKKIRDNCPCCYG
AQECPLYPTELAFVLDASDGVTRSTFNNMRDTVLRLVSDITITESNCPRGARVALALYNN
EVTTEIRFADAQKKRALVERVQGLQTQLTRKQRSLETAMNFAAQNTFKRVRSGFLVRKIA
VFFVNGPVTTSQDLSAAALRLYDSGISSLFLLNREDRQLRRALQINNTAIAQIMVLPSPG
SAEYNNVIKKVMTCHICLDFCAPDQMCDYVPPRRVRDRRDPATDLDIDMAFILDSSESTW
PSVFTEIKRYVALMTEQLEMSPDPASTTHHARVALVQHAPYEYLHNGSGIPISVTFGLTD
HKSPNSVRSFLQDKVHQLEGGRALADALEGTVEHVFEKVPHPRHLKVLVLFVTGPVELHE
ERIIRAATGVKCKGYFVVVMAVGKLFSAGDVRVLAQVASEPSDVFFKRVDRPSGFYDDHI
QTFARLLPKYLGLENAFYLSPEVSKKCQLYQSDQPHKIPSSLPQTEKHQNHHGQQEVHDR
KQIETGMEKMHLVNVTSSGFALQWLSGDSKATHEVTVTRMKDHTLVLRKNMTGNHLSISE
LEASETYNVVVNTHSFNGHVASTYKGIVPTKSAHLKVLTVNDVMGIAPTAPLSKPDTKSA
EQKVLTPSEVMGIEPSAPLSKPEIKTVELKVPSEAMGSVSSVPLSKPEIINNLMDPCSLD
FDTGLSCRDYQAKWYFDRKNGFCTQFWYGGCGGNDNRFETEADCLKHCMKTVAEPKASEG
HVKAVLPPAPAPAALHSSVDICKLPKEEGSCAKFVLKWHYDPLSGSCARFWYGGCGGNQN
RFETQDECEKACAKAAVKQGIIAAVKS
NT seq
9624 nt
NT seq
+upstream
nt +downstream
nt
atggggaagagccggttactactgtttgccctctggggtgtactggtttttggcctattc
ccaaatcttgaagctcaggatgccccttcgacagccaaccttgtattcttaattgatgga
tcagagagcgttggagctgccaacttccccctcgtccgtgatatggtggtccagttgatt
gagggacttgccattggcagggatgcaatccgtgtagccctcgtggtttatggtgccgtt
cctgaaattcagttcaatctcaatagctatgacaacaaagagagtgttctcagtgctatc
cagcggattaactaccctggcggtaatgaggcaaacctgggggccgctttgaaggaggtg
gcagacagtgtattgggccaagatgcaggaagcagggcagaggaagaggtaccccagatg
ctggtggtgatcagtgctggggagtccactgatgatgttagtcagggcagtagggcccta
atgcaggccagtgtgtacacatttggcattgctgtgggtgattctgctactgcccagctg
gaagctattgctacacacaaaaacttgtttctgtctgctcctgatgccagagaaatggca
agcattggtgacaagatactgccatacattaatgggattgcagagcgcaccattgtgatt
caaacagagttcacagaagctttggctgttgggaagagagatataattttcctcattgac
agtagcatgggtaccgtcgtaatcaatgcagtgcgagaattcatcaaaaggtttattgac
accatgccaattggtcctgatcaggtgcaggttggagtggccatgttttccaccacccca
agaatggagatcaacctcaactcattcagttcaaaggaatcactaatctctgccctcgca
agaataaaacccagaccttcgaatgaagtcaacattggtgctgccttgaattttgtgagg
accgaaatgctcacagccgagagtgggagccgcattgatgatcaagtgccacagcttgta
ttgctcctaaccagtaaaaaatccaaagacagtgtccaacaaccggctgatgatcttcgt
caaaggggtgttctgactttggctgcaggattgaaggctgcaaatgaagctgagctccag
caaatagcgattgatgaaagtgttgttttcatgctgaaggactttagggtattgctgcgc
aaccccaaagaaattatctcccctctttctacattggctggtgttgttgtagaagagatt
ccaactgagtcagagccagttgtggatgttactacagtccacacccaaagaattgtccga
gacattgtcttcttggtcgatggatctaactatgttggaaataacctgcaatctgtactg
gagttcattaccgaagtggtggacaaactagatgttcgacctgagcgagtgcgcattgga
ctaattcagtttgctgaaacgcagcatacagagttttttctgaacactcacaaaaccaaa
caggatgtgctctctgccatcgctcagctgagattgaggggaggacgggcattgaacact
ggtgcagccctacaatatgcactaaccaaccacttccagcccgcagttgggtctcgtagg
agagagggggtccagcaggtcctggttttaataactggaggaccatctcaagatgaggtc
aagaggattgcagaccgtgtagctgtagagggtgttttgacttttgctgttggagctggc
caagtggaagatcgtttcctgaaaactgttgcttttgttgaggatttggcttactacaga
agtaattttgctgacttgtcaagtgttgtggatgaaattatgtcaccactggtcactgtt
gttggaacgactgatactctagaagtgactgaacaaccaggtccctctggtggagaaagg
gatgttgcatttttaattgatggctctgatgatgtgagaagtgactttccctatatccgt
gacttcattaccaaagtccttgagcctctggatataggctttgataaagtacgagtttct
ttggtccagcatagtgagagaccaagtccatacttctacttgaacacttaccaaaccaaa
gatgaggtgctgagagctgtaagtggactcagtccggcaggtggcagaagtttaaacact
ggagctgccttgactttcatgaaaaacaccattttgtcaccagcaaatggtggtcgggcc
ggttacaatgttccccaatttttgatagttttgactgggggaagatcaagagacagtgtc
agagaacccgcagttgccctaaagactgagggagttgttccttttggtgttggagtgaaa
aatgcagaccctaaacagattgaggccatctctcacaatccatcatttgctttcattgtg
aatgaattcaacgagctcaacactgttcaggaaaagctcaagaactatgtaaaccttcct
gatcaagaactgaaggtcattctagacacagcgactgaacaaccaggtccctctggtgga
gaaagggatgttgcatttttaattgatggctctgatgatgtgagaagtgactttccctat
atccgtgacttcattaccaaagtccttgagcctctggatataggcttcaataaagtacga
gtttctttggtccagcatagtgagagaccaagtccatacttctacttgaacacttaccaa
accaaagatgaggtgctgagagctgtaagtggactcagtccggcaggtggcagaagttta
aacactggagctgccttgactttcatgaaaaacaccattttgtcaccagcaaatggtggt
cgggccggtaacaatgttccccaatttttgatagttttgactgggggaagatcaagagac
agtgtcagagaacccgcagttgccctaaagactgagggagttgttccttttggtgttgga
gtgaaaaatgcagaccctaaacagattgaggccatctctcacaatccatcatttgctttc
aatgtgaaggaattcagggagctcagcactgttcaagaaaagctcaagaactacgtaaac
cttcctgatcaagaactgaaggtcattctagacaaagcggagtctgaaggacctaagaag
gacatcatctttgtgattgatggctctgaaggtgttggtagagaattcccaattatccag
gagtttgtgcgcagagttgtggagaatctcaatgttggcgagaacaagatccgagtaggt
gtggtgcagtatggagatacaccatatgcagacatatacctcaactcacacagaaccaaa
gaaggtgtcctaaatggcattaaggaactccgacagcgaggcgggaggcagcgtaacctt
ggacgggccattgactttgttagtcgtgaagttctgacttctggacgtggtggaaggaaa
caggagggagttccacaatttgtagttgtaatttcaggaggaaaagcaacagataatata
agaccatatgcaacagtaatgaaacagtctggagtcgtcccgtttagcataggaacaaga
gacatggaccctcaggaattgcaagtgacgtcctatgtccccagatttgcctatacagtt
gatgacttgcctggactatatacaattcaggatacactcatcaccaccctgacagagcta
tctagtgaggagttagccaaattgcgccctgtgtaccctacagagactgtaattccagta
cctcgtggagataaaagggatgttgttttccttattgatggcacaacaaagatgcgcact
gagttccctgccataagagacatggtttatcgagtggtggacaagttagatgtgggtccc
aacaatgtgagagtctcagttgtgcaatacagtgatgatcccaaactggagtttcttctc
aacgagcactccactaaggaggaagttcaccaggcaatacgaagaatgagaagcaaaggt
ggcaatcagctgaacactggacaagctctggaatatgtttcaaacaacatctatcaaaga
tcagctggaagccgcgcagaagagggtgtgccccagtttctcatcttggtaaccggagga
aagtcaaatgatgatgtgtctggtcccgctaatcaactgaagtcaagccttgttgcaccc
ttagcagttggaggtcataatgcagatgaagaggagttaaaattaatttcttttagtcca
gaactaacattcacaatcagagacttccagcagccacaagaagttgagcaacagctatta
acaaaagtcagtaccatgagcagagatgaaatttcagccccaactgtgcataaagtctca
ctcaatcttggaaaaaaggacatcattttcctcattgatagctctgacagtgctggacaa
ggtggtgtcgctcacattcgtgactttatcttgaaagtggttgatcagcttgatgtacga
cctgaccaagttcgcgtggccctggtacagtatggcgaaagacctcaaactgaattctct
ttgaactcccatgacaacaagcaatctgtcatctctgccattaagagattgcgtcatatg
ggtggacgtggtgctgacctagctgaggcgattaagtatgtcatacgaaatgagctaacg
gaaactgctggggtacgtccttcagacgcttcccagcatttagttgtgctaactggtgga
agatcaacctccgatgtatctacttatggccaagttctcaaaggctctggtattaaatgt
ataggaattggtgcagaaaatgcagacccaagacaactggaacaaattactaccacttct
gatgacgtcctgagggtggctactttcccaaatcttccaaacatagagggcaaatttata
gccagacttaatggaacgattaaagacgagcctcccactgactttgaagacattggtcct
gccccaccacaggtcaaggctgctgacattgtctttttggttgatgggtcaatcaatctt
ggcaaggacaattttaaagaggttatggaattcattctcaatttaattgacctgttcttc
agtgagagagataatcttcagtttggtctagcgcattatgctacagatgtgaccaatgaa
ttctaccttaatacttacaaaaataaggatgacattatcgatgccataactcgagtggag
tataagggaggtcgggaaatcaaaacaggcaatgccattcgctatgttcagaaaacacac
tttgtaaaagcaagaggaagtcggaaggatgagggaattccacagatcctgatggtagtc
actggtggacggtcaagggatgacagcaaatcagcggcactagctctcaaagccagtggt
gtgcgcatctatgctgttggggtgggtaactttgaggacgaacttaagaatttgggcagt
gcatcaaccacagtggcccaagccagtaccttccaagagctctctgaacttaatgagcag
attttgcaagcactggaagatgatgtgatcataaaatcatgccatggagtaaaggatatt
acaagagaatgcaagttggatgttcttgtcgggtttgatgtggcttcacagaacatcttt
gctgctcaaaggtcactagagaagaaggtggctagtattctcaaacacattacccagatg
cagcccatcagctgcacttctggccaggtcccctcaatacaagtgggcatgctagcgatg
gactcagcctctgagcctgttcagatggactttaccaacagatacacagagcttcttgag
cccttcaaggccctccgaaaccgtgggccttttgttctaaacggtgcaacaatcaaagct
tatgctgatagattcaaaagtcagccttcagatagtgtcaaggttgtgatccacttaact
gatggattagatgcccaatataacattctgaaagagagagttgatctgatgcgttcagct
ggtgtcagtagtttcattcttgttgccctggagagagtgccacaatttgaggaagcagtt
ctcttggaatttggccgtggctttaggtacacacgacctctgcgtgtaaacctcttggac
ttggattatgaacttctggaagaactggataacatcgctgagcgggaatgctgttctgtt
ccatgcaagtgtaatggccagagaggggacagaggagctgttggtgtttctggaccaaag
ggtaaatctggtggtcaagggttcagtggacatcctggtgatgaaggtggtccgggagag
agaggtccacctggtataaacggaactcaaggattccaaggatgtccaggtcaaagaggt
attaaaggatctcgaggatacaatggtgaaaagggtgaaaatggagagattggtttagat
ggaatcaatggagaggagggaacaagtggtgttgttggccctccaggagatcgaggaaac
cctggcgaaagggggcctaaaggggctaaaggccaggcaggagatgttggtcagactgga
atccgtggtgatccaggcatccccggaagagacaacaaccagaggggaccaaaaggtgat
ccaggcgatgctggcccaccgggagagccaggggtggacggaaataagggaggtgctggt
gaaccagggagacagggccctgatggtagaagagggcctcctggtcaagctggtgctcct
ggaaagcctggaagcgacggtttaccaggagagagaggaattgggggatctcggggtcct
actggaccaattggagcacctggtcttagaggagaggatggaaaccctggtccaaggggg
ccaggaggactgccaggaacggctggagaaaagggtagaagaggcactgttggccgtaag
ggtgaaccaggagagccaggacctaaaggtgtagtcggacccctgggaccccgtggggag
cctggtgaggatggaagagatgggtttggtacacctggtcccaaaggaagaaagggtgat
gaaggtttccctggtttccccggtccaaagggtgaagcgggtgaccctggttcaaaggga
ggacctggacccagaggaaacaatggccagaggggtacctcaggggaatctggtggacct
ggacaaaagggagacactggatacccagggccccatggcgaaagaggatccagaggaact
ggtccggtgccatgtgatctggtcaagaaaattagggataactgtccctgctgctatggt
gctcaggaatgtcccctataccctactgagttggcctttgtcctggatgcatcagatggt
gtaacacgctctactttcaacaacatgcgggacactgttctgcgcctggtcagtgacatc
actattactgagagcaactgtccccgaggtgcccgtgttgctctcgcgctctacaacaat
gaggtgactactgagatccgctttgcagatgcccagaagaagcgagcacttgttgagcga
gttcaagggctccagactcagctgacccgtaagcagcgcagcttggagacagccatgaac
tttgctgcacagaacacgtttaaaagagttcgcagtgggttccttgtgcgcaagattgct
gttttctttgtcaacggccctgttacaacatctcaagatttaagtgctgctgctctacgc
ctctatgattcaggaatttcctctttgttcctccttaaccgcgaagatcgccaactcaga
agagccttgcagattaacaacaccgctatagcccagattatggttctgccctcacctgga
agtgctgaatacaacaatgtcatcaagaaggtcatgacctgccatatctgcctggacttc
tgtgccccggatcagatgtgtgattatgtcccaccgcgtagagtccgagaccgaagggat
cccgcaactgacttggacatcgacatggccttcattcttgatagttcagagagcacctgg
ccctctgtcttcacagagataaagcgatatgtggctttaatgacggaacagctagagatg
tcccctgatccagccagcactacccatcatgctcgagtagcacttgttcagcatgcacct
tatgaatacttgcacaatggcagtggtattcctatcagcgtgacctttggtttgacagat
cacaagtcacccaacagtgtccgaagcttcctacaggataaggtgcaccagctggaagga
ggacgtgcccttgcagatgctcttgaaggcactgttgagcatgtgttcgagaaggtgcca
catccccgccatttgaaggtattagttctgtttgtgactggaccagttgagctgcatgag
gagaggataataagggctgccactggagttaaatgcaaaggatacttcgtagtggtgatg
gcagttgggaagctgttcagtgcaggtgatgtccgtgtcctggcccaagtggcaagtgag
ccttcagatgtattctttaagagggtggatagaccttcaggcttctatgacgaccacatt
cagacatttgccagactgttgcccaagtacctcggccttgaaaatgcgttctacctgtca
cctgaagtctctaaaaagtgtcagttgtatcagagtgaccagccacacaaaatcccatcc
agtttgccacaaacagagaaacaccagaatcatcatggacagcaggaggttcatgacaga
aaacagatagaaacaggtatggagaaaatgcatctggttaatgtcacctccagcggattc
gccttgcagtggttgagtggtgattcaaaggccacccatgaagttactgtgactcgcatg
aaggatcatactctagtgctgaggaaaaatatgactggcaaccatctctccatttctgag
ttggaggcctccgaaacctataacgtagtggtcaacactcacagtttcaatggtcatgtt
gccagcacctacaaaggcattgttcctacaaaatcagcacatctgaaggtccttactgta
aatgatgtgatgggtattgcaccaactgcacccttgagcaaaccagacacaaaatcagca
gaacagaaggttcttactccaagtgaggtgatggggatcgagccctctgcacccttaagt
aaacccgaaattaaaacagtagaactgaaggttccgagtgaagcaatggggagtgtgtcc
tctgtacccttaagtaaaccagaaataattaacaatcttatggacccatgttcacttgac
tttgacactggactgtcatgcagagattaccaagctaagtggtactttgacagaaagaat
ggattctgtacacagttctggtatggaggttgtggaggaaatgacaataggtttgagact
gaggctgactgcctcaaacactgcatgaagacagtggctgaacctaaggcaagtgaaggg
catgtcaaagctgttctccccccagcaccagctccagctgccctgcactccagtgtggat
atctgcaagctaccaaaagaagagggctcctgtgctaaatttgtgcttaaatggcattat
gatccgcttagtggaagctgcgcacgcttctggtacggaggatgtggagggaaccagaat
cgctttgagacacaggatgagtgtgagaaggcttgtgctaaagcagctgttaaacaaggg
atcatcgctgcggttaaatcatag
DBGET
integrated database retrieval system
