Carassius auratus (goldfish): 113056128
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Entry
113056128 CDS
T07313
Name
(RefSeq) DNA mismatch repair protein Msh2-like isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
113056128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caua03400
]
113056128
DNA repair and recombination proteins [BR:
caua03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
113056128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
113056128
NCBI-ProteinID:
XP_026078450
Ensembl:
ENSCARG00000038661
UniProt:
A0A6P6L1N5
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Position
37:complement(9886230..9925095)
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AA seq
936 aa
AA seq
DB search
MAVQPKQNLSMDSASEHGFLNFYFSMPEKPDTTVRVFDRNDYYTVHGKDAAFAAKEVFKT
NGVIKNLGTGNKRLESVVLSKMNFESFVRDLLLVRQYRVEVYKNASKSSKEHDWQISYKA
SPGNLTQFEEILFGGGGGPGEGAAGVVGVRLGTGADGQRVVGVGYVDSTLRKLGVCEFPD
NDQFSNLEALLVQIGPKECVLPGGDAGGDLGKLKQVVQRGGILLTDRKKSEFTTKDIVQD
LNRLLKAHKGETVSSAALPEMEKQIAMSCLQAVIKYLELLSDEANFGSFKITTFDLNQYM
RLDNAAVQALNLFQGSCDDATGTHSLAGLLNKCRTPQGQRLVSQWIKQPLIDKNKIEERL
DLVETFVEDSELRKSCQEDLLRRFPDLNRMAKKFQRQSSNLQDCYRVYQAVGQLPSLVLA
LERYNGKHQVLLHAAFISPLNDLISDFSKFQEMIETTLDMNQVEHHEFLVKPSFDPTLTE
LRENMDRLEKAMQAALNSAARELGLEAAKTVKLESNAQIGYFFRVTCKEEKSLRNNKKFT
TLDVQKNGVRFTNSKLSSLNEEYIKSREEYEEAQNAIVKEIISIAAGYVDPVQTLNEVIA
QLDAVVSFAVVSHAAPVPYIRPKILEKGSGKLVLKAARHPCVEAQDDVAFIPNDVTFARA
EEMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAGDSQIK
GVSTFMAEMLETAAILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEYIATHLKSFCLF
ATHFHELTALAQQVPTVRNLHVTALTTDSTLTMLYKVKRGVCDQSFGIHVAELANFPKHV
IANAREKALELEEFQDISRAGEEAGPEAKKRCLEKQEGEKIIEAFLAKVKSMPAESMSDE
AVKEELCKLKAEVIGQNNNFVNDIVSRSAKVKLTSA
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaacctaaacaaaatctttccatggacagtgcatctgagcatggatttctg
aatttttatttttctatgccagagaaaccagacaccaccgtgagagtatttgatcgaaac
gattattatacggttcacggaaaagatgcagcttttgcagccaaggaggttttcaagacg
aatggagtcatcaaaaacctgggcacaggaaataagaggttggagagtgtggttctcagt
aagatgaactttgagtcatttgtgagggacctgctgctggtcagacagtaccgggtggag
gtttacaagaatgccagtaagagtagcaaagaacatgactggcagatatcttacaaggcg
tctccaggaaatctgacccagtttgaggagattttatttggcggtggaggagggcctggg
gagggagctgctggtgttgtcggggttcgtcttggcaccggggccgatggacagcgtgtt
gttggtgttggctatgtggacagcaccctcaggaaactcggtgtctgtgaattccctgac
aatgaccagttttccaatctggaggctcttcttgtgcagatcgggcccaaagagtgtgtg
cttcctggaggagatgcaggtggagaccttgggaaactcaaacaggtggtacagcgtggt
ggcattctgctcacagacaggaagaaatctgagttcacaaccaaagacattgtgcaggat
ctgaatcggctactgaaggcccataagggagagactgtgtccagtgctgcacttccagag
atggagaaacagattgcaatgtcttgcttacaagcagtcatcaaatacctggagcttctc
tcagatgaggccaattttggttccttcaagataaccacttttgacctcaaccagtacatg
cgtctggataatgctgctgtgcaggcactgaatctcttccagggttcctgtgatgatgct
acaggcacacactctctggcaggcctcttaaacaaatgtcgtaccccacaaggacagcgg
ttggtcagccagtggatcaaacagcctctcattgacaaaaacaagatagaagaaagactg
gatcttgtggagacttttgtggaggactctgagctaaggaagagttgtcaggaggatctt
ctccgtcgttttccagacctgaaccgaatggcaaagaagttccagcgtcaaagctctaat
ttacaagactgttacagggtctatcaagctgtgggacaactgccgagtctggtgctggcg
ttggagagatacaatgggaaacatcaggtcctcctgcacgcagcattcatctctcccctc
aacgacctcatctctgacttctccaaatttcaggagatgattgaaaccacactggacatg
aaccaggttgagcatcatgagttcctggtgaaaccctcatttgatcccacattgactgag
ctcagggagaacatggatcgtttggagaaagccatgcaggctgccttgaacagtgcggct
cgagaactggggctggaagcagctaagactgtgaagcttgaatccaatgcacagatcggt
tactttttccgagtcacatgcaaagaagaaaagagtcttcgcaacaacaagaaattcact
actttagatgttcaaaagaacggagtgcgattcactaacagtaagctgagctctttgaat
gaagagtacattaaaagcagagaagagtatgaagaggctcagaacgccatcgtcaaagag
atcatcagcatagctgctggatatgtggatccagtacagactctgaatgaggtgatcgct
cagctggatgcagtggtgagctttgctgtggtgtcccatgctgccccagtgccttacata
aggcctaaaatactagagaaagggtcagggaaactcgttttaaaggcagcaagacatccc
tgtgttgaagcccaagatgatgtggctttcattcccaatgatgtcaccttcgctagggcc
gaggagatgtttcatatcatcacaggtccaaatatggggggtaaatctacatacatccgt
caagtaggtgtgatcgtgctgatggcacagattggttgttttgtgccatgtgatgaggca
gagctgagtgtggtggactgtgtgctcgctcgagtgggtgctggggacagccagatcaaa
ggagtgtccacatttatggctgagatgctggagacggctgctattcttcgatcagccaca
gaggattctctcatcattattgatgaactgggcagaggcacatccacatacgatggcttt
ggtctggcctgggcaatctcagagtacatcgccacccacctcaagtccttctgcctgttt
gccactcacttccatgagctgacggcgcttgcacagcaggttcccactgtccgtaacctc
cacgtcactgccctgaccacagacagcactctcaccatgctctacaaggtgaaaaggggc
gtttgtgaccagagctttgggattcatgtggcagagcttgctaacttccccaagcatgtg
attgctaatgcaagagagaaggctttggagcttgaggagttccaggatatctcaagagct
ggggaagaagctggacccgaagccaagaaacgctgcctggagaaacaggagggggagaag
atcatcgaggctttcctggctaaggttaaatcaatgcctgctgaaagcatgtctgatgag
gctgtcaaagaggagctatgcaaactcaaggcagaggtcatcggacaaaacaataacttt
gttaatgacatagtgtcacgttctgccaaagtcaaactgacttcagcctaa
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