Carassius auratus (goldfish): 113056636
Help
Entry
113056636 CDS
T07313
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
113056636 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caua03400
]
113056636 (msh6)
DNA repair and recombination proteins [BR:
caua03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
113056636 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
113056636
NCBI-ProteinID:
XP_026079202
Ensembl:
ENSCARG00000011896
UniProt:
A0A6P6L699
LinkDB
All DBs
Position
38:complement(2090453..2103246)
Genome browser
AA seq
1367 aa
AA seq
DB search
MAKQSSLFNFFTKSPPLAVKARSNPSPVEADAVNRSNTSPKEQAKVNSKKTPSKPVKPQT
TAGHAKLFGEKAVSAKQSSEPSSIFNAGTLVWAKLEGHPWWPCMIVPQPLTGQQMRGRGR
DQRLHVHFFDEPPTRGWVNTKYIREYQGSDSTDAKSGGVFFSGKPVIRKAMELADAAMKD
SPEQRLKMSVCMDPSGDEEEEDEDMEVDKSTLSDADMSEEEVKEKAKPSRRSSRAAAEKG
QKPKRRRIVVASDSDDSGEEFKPDQAGGSSDEEEEEGVSSGAEEEESEPETEPDSPVKPV
KRKRPSEKPVKSKSKPDPPKRAPAAVSSVASDTKSRLSAFSAPDNFESQSGNANGTDGGP
TLWDHEKLEWLQDGKRKDAQRKRQSDENYDPTTLYVPEDFLNRTTPGMRRWWQLKSEMFD
TVLFYKVGKFYELYHMDAVIGVNELGLTFMKGTWAHSGFPEIGFGRFSDVLVQKGYKVAR
VEQTETPEMMEARCKTLARPTKFDRVVKREVCRIITRGTQTYSVLDGAPSETQSKYLLSI
KEKSEEDSAGHGHIYGVCFIDTSVGRFHIGQFQDDRHCSRLRTLVAHYSPAQVLYEKGNP
SAETLKIFKAILSSTLQEGLNAGSQFWDAQKTLKVLAEEDYFNESKTDEEKASVLPSTLK
AMTSECDALSLTPKAGYELALSAFGGCMFYLKKCLVDKELLSMGNFEEYVPVDVEMEQAG
GASCFFAQTRQRMVLDGVTLANLEILQNSSTGGPEGTLLERLDMCCTPFGKRLLKQWLCA
PLCNPSSIGDRLDAVEDLMGAPSQVSEVTDLLKKLPDLERLLSKIHSMGTPLKGQDHPDS
RAILYEEVIYSKRKIADFLAALEGFKVMKEIVSIMEPVSDGFKSKLLRQVMLLKTENEDG
LFPDLSPELKRWDTAFDHQKARTTGVITPKAGFDPEYDQALNGIKDCDRGLQEYLDRQKK
RLGCKNLSYWGTGRNRFQLEVPDSVSERSLPEEYEVRSTKKGWKRYWTKEIERLFSELQS
WEDKRDSALKDCMRRLFYNFDKNCKDWQTAVECMAVLDVLLSMSRYSQSGDGPMARPEIL
LSGDGSQSRPFLDLRGSRHPCVTKTFFGDDFIPNDIFIACSGAEDDDDDDKALAPCVLVT
GPNMGGKSTLMRQCGLVVILAQLGCYVPAESLRLTPVDRVFTRLGASDRIMSGESTFFVE
LSETASILLHATNHSLVLLDELGRGTATYDGTAIASAVVKELSEKICCRTLFSTHYHSLV
EEHVQDPAVRLGHMACMVENECEDPSQETITFLYKFIRGACPKSYGFNAARLANIPEEVI
QSGHKKAREFERSTVSLRIFKKLCSFAEDPSSDRERFTTLLQMIGGL
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcagagttctctttttaatttcttcacgaagtcgcctcctctcgcggtgaag
gccagatctaacccgtctccagtggaggctgatgctgtgaacagatccaacacctcgccc
aaagaacaagccaaagtaaacagcaagaagacgccatcaaaaccagtcaaaccccaaact
acagctggacatgcgaaactattcggagagaaagcagtcagtgcgaaacagagcagtgaa
ccgtcatctatattcaacgctggcactctggtttgggccaaactggagggccatccctgg
tggccctgtatgattgttcctcagcctctcaccggacagcagatgaggggccgaggacga
gaccaaagactccacgttcacttcttcgatgaaccgccaacccgaggttgggttaacaca
aaatacataagagagtatcaaggctctgatagcaccgatgccaaatccggcggcgtgttc
ttcagcggtaagcctgtgatccgtaaagcgatggagctggcagatgctgcgatgaaggac
agtcctgagcagagactgaagatgtccgtgtgcatggatccttcaggtgacgaagaggag
gaggatgaggatatggaggttgataaatcaaccttatcagatgcagatatgtctgaggaa
gaggttaaagaaaaagcgaagcccagtcgacgttcgtctcgtgctgcagctgaaaaaggt
caaaagccgaagcgtcgccgaatcgtggtggcgtctgacagcgatgactctggtgaagag
ttcaaacctgatcaggcaggaggaagcagtgatgaagaggaagaagagggagtgagtagc
ggggctgaggaagaagaaagcgagccggagacagaaccagacagccctgtgaaaccggtg
aagcgcaaacgtccatcagaaaagcctgttaagtcaaagagcaaaccagaccccccaaaa
cgagcacctgcagccgtttcatcagtggcatcggacaccaaatctcgactttctgctttc
tccgcaccggacaacttcgaaagtcaaagcggcaacgcaaacgggacggatggaggacca
actttgtgggaccacgagaagctcgagtggctgcaagacggcaagcgaaaagatgcacaa
cgcaaacgtcagtctgacgaaaactacgaccccacgactctatacgtccccgaagatttc
cttaacaggacgacacctggcatgcgccgctggtggcagctgaagtccgagatgttcgat
accgttctgttctacaaagtcggtaagttctacgagctctaccacatggacgctgtgatc
ggcgtcaatgagctcggtcttaccttcatgaagggcacttgggcacattccggcttcccc
gagatcggctttggacgcttctcagacgttctcgtgcaaaagggctacaaagtggctcgc
gtggaacagaccgagacccctgagatgatggaagcacgatgtaagacattggcgcgtccc
actaaattcgaccgcgttgtcaagcgagaggtttgccgaatcatcacgcgagggactcag
acgtacagcgtcctcgacggcgccccttcggaaactcaaagcaagtatctcttgagcatt
aaagagaagagcgaggaggacagcgcgggacacggacacatctatggggtgtgtttcatc
gacacctcggtgggacgcttccatatcggtcaattccaggatgaccgtcattgttcccgt
ttgcgtactctggtggcgcactattctccagcacaggtgctttacgagaagggcaacccg
tcagctgagacgcttaaaatctttaaagcaatcttgtcttcaactctacaagaaggtctc
aatgctggttcgcagttttgggatgcgcagaagaccctcaaggtcctcgcagaggaagac
tacttcaacgaaagcaaaaccgatgaagaaaaggcatcagtgttgccttcgactctaaaa
gcaatgacgtccgaatgcgatgctttaagtctcactccaaaagcggggtatgaacttgct
ctttctgcatttggcggatgcatgttctacctgaagaaatgtctagtggataaggagctt
ttatcaatgggaaactttgaggagtatgttcctgtcgacgtggagatggagcaggctgga
ggagcgtcgtgtttctttgcccagactcgtcaacgaatggttttggatggagtgaccctt
gctaaccttgagatccttcagaacagctcaactggaggtcctgagggaaccctacttgag
cgactggacatgtgttgcactccctttggcaaacgcttgctaaagcaatggctttgcgca
cctctttgcaatccatcctccattggagatcgcctagatgctgttgaggacctgatgggc
gccccgtctcaagtctccgaagtcactgacctgctaaaaaagcttccggatctcgaaaga
ctgcttagcaagatccacagcatgggtactcctttgaaaggacaggaccatccggattcc
cgagctattttgtacgaagaagtcatctacagcaaacgcaagatcgccgactttctcgcc
gcacttgagggctttaaagttatgaaggaaatcgtgtcgatcatggagcccgtttcggac
ggctttaaatccaaactgctgcgtcaagtgatgctcctcaagactgaaaacgaagatggg
cttttcccagacctttccccagagctcaaacgctgggatacagctttcgaccatcagaaa
gctcgcaccacaggcgtcatcacgccaaaggccggcttcgatccagagtacgaccaggcc
ttaaacggaataaaagactgtgaccgaggcctgcaggaatacctggaccgacagaagaag
cgactgggctgtaagaatctgtcttattggggaacgggaaggaaccgcttccagctcgaa
gttccagacagtgtttccgagagaagcttgccagaagagtacgaggtgaggtccaccaag
aaaggctggaaacggtactggactaaagagattgaacggctgttttcagagctacagagc
tgggaagacaaacgagactcggcgctgaaagactgcatgagaagactcttctacaatttc
gacaagaactgcaaagactggcagacagcggtcgaatgcatggcagtgcttgacgtgctg
ttgagcatgtcccgttacagtcagagcggcgacgggcccatggcgagaccagagatcctt
ctctcaggtgatgggtctcagtcacgccccttcctggatctcagagggtcccgtcaccct
tgcgtcaccaagaccttctttggtgacgacttcatccccaatgacatcttcatcgcctgc
tctggtgctgaggatgatgatgatgatgataaagcacttgccccatgtgtattggtcacc
gggccaaacatgggaggcaagtccaccctgatgagacagtgtggtctggtggtgattttg
gctcagctgggctgctatgttcctgctgagagtctgcggctcactcctgtggaccgcgtc
ttcactcgactcggcgcctctgatcgtataatgtcaggtgaaagcacgttctttgtggag
ctgagcgagacggccagcatcctgctgcacgccaccaaccactccctcgtcctgctggat
gaactgggccgaggcacagccacgtatgacggcacagccattgccagcgctgtggtgaag
gagctgtccgagaagatctgctgccggaccctgttctccactcattaccactcgctggtg
gaggagcacgtccaggaccccgccgtcagactcggacacatggcctgtatggtggagaac
gagtgtgaggaccccagtcaggagaccatcaccttcctgtacaagttcatcagaggcgcg
tgtcccaagagttacggcttcaacgcggctcgcctggccaacatcccggaggaagtcatc
cagtccggccataagaaggcccgcgagtttgagaggagcaccgtgtctctccgcatattc
aagaagttgtgctcgttcgctgaagaccccagctctgaccgtgagcggttcacaacactg
cttcagatgatcggcggcctgtga
DBGET
integrated database retrieval system
