Carassius auratus (goldfish): 113058398
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Entry
113058398 CDS
T07313
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
113058398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caua03021
]
113058398
03019 Messenger RNA biogenesis [BR:
caua03019
]
113058398
Transcription machinery [BR:
caua03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
113058398
RNA polymerase I system
113058398
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
113058398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW7_SPT5
KOW5_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
DUF150_C
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
113058398
NCBI-ProteinID:
XP_026082043
Ensembl:
ENSCARG00000019110
UniProt:
A0A6P6LBM4
LinkDB
All DBs
Position
40:6317993..6331680
Genome browser
AA seq
1086 aa
AA seq
DB search
MSDSEDSDFSDNPSERSSEAEEAEENEEDEQGSLAGSDKAAEEEGEDLEDEEEYDEEEEE
DDERPRKKPRHGGFILDEADVDDEYEDEDPWEDGAEDILEKVNEEAEVSNIDHVVLDEDH
SGSRRLQNLWRDSREEALGEYYMRKYAKSSGGEHFYGGSEDLSDDITQQQLLPGVKDPNL
WTVKCKIGEERATAIALMRKFIAYQCTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKAAI
EGVGNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEPS
QNTISLKMIPRIDLDRIKARMSMKDWFAKRKKFKRPPQRLFDAEKIRSLGGEVSHDGDFM
IFEGNRYSRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEGIDLEVVTETTSKEREHN
LQAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHVK
VIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGEL
VQLDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVKDI
VKVIDGPHSGREGEIRHIFRGFAFLHCKKLVENGGMFVCKARHLVLAGGSKPRDVTNFTV
GGFAPMSPRISSPMHPGGGGQQQRGGGGGGGGGMGRGRGRRDNDLIGQTVRISQGPYKGY
IGVVKDATESTARVELHSTCQTISVDRQRLTTVGGKERQGRSSTHLRTPMYGSQTPIYGT
GSRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRPDEEYEFAY
DDEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTDQYSPYAAPSPQG
SYQPSPSPQSFHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSP
GGYNPHTPGSNIDQASSDWVTTDIMVRVKDTFLDGGVINQTGIIRSVTGGMCSVFLQDIE
KVVSISSEHLEPVTPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMELDEQLKILNLRF
LGKLEA
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacagcgaggacagtgatttctctgataatccgagcgagaggagcagcgaggct
gaagaggcggaggagaacgaggaggatgaacaggggagtttagctggcagtgacaaggct
gcggaggaggagggagaagatttggaggatgaggaggaatatgacgaagaggaggaagag
gatgatgagcgccctaggaaaaaacctcggcatggtggcttcatcttggatgaagccgat
gttgatgatgaatatgaagatgaagatccatgggaggatggtgctgaagacatcttagaa
aaagttaacgaagaggccgaagtctccaacattgaccatgtggttttggatgaggatcac
tccggttcaaggaggttgcagaatctttggagggattcacgcgaggaagctctgggggaa
tattacatgagaaaatatgccaagtcctcaggtggagagcacttctatggcggctctgag
gacctttctgatgacatcacccagcaacagttgcttcctggggtcaaggatcctaacttg
tggaccgttaagtgtaagattggagaggaaagagctacagccatcgccttgatgcgaaaa
ttcattgcttatcagtgcacagacacgccgctccaaatcaaatccgtggtggcccctgag
cacgtcaaaggttatatctatgtggaggcgtacaagcagacccacgtcaaggccgctatt
gagggtgtgggaaacctgcgcatgggcttctggaaccagcagatggtgcccattaaagag
atgacggatgtgctgaaagtggttaaggaagtgactaaccttaaacccaagtcttgggtt
cgtcttaagagaggcctttataaagatgacattgctcaggtggactatgttgaaccaagc
cagaatacgatctcactgaaaatgattcctcgtattgatttagatcgcatcaaagcgagg
atgagtatgaaagactggtttgcgaagagaaagaagtttaagaggccacctcagaggctt
tttgatgctgaaaagatcaggtcccttggtggtgaggtcagccatgacggggacttcatg
atatttgaaggcaaccgatacagccggaaaggcttcctgttcaaaagctttgctatgtcc
gctgtgatcacagacggagttaaacccactctgtctgagctggagaagtttgaggaccag
ccagagggaattgaccttgaagtagtcacagagacgacaagtaaggagcgcgagcacaat
ctccaggcaggagataatgttgaagtgtgtgaaggggagttgatcaaccttcagggtaaa
atcctgagtgtggatggcaacaagatcaccatcatgcccaagcatgaggatctcaaggac
cctctcgagtttccagctcatgagttgaggaagtacttccgtatgggtgaccatgtgaag
gttatcgcagggcgttttgaaggtgacacaggcctcatagtccgtgtagaggagaacttt
gtcattctgttctctgatctcaccatgcacgagttgaaggtcttgccccgggacctgcag
ctgtgctccgagaccgcttcaggtgtggatgcaggaggccagcacgagtggggagagttg
gtacagttagacccccaaactgtaggtgtcattgtcaggctggaaagagagacgttccag
gttctgaacatgcatgggaaagttttaaccgttcggcaccaggcggtaaatagacggaag
gacaaccgctttgctgtcgctctcgactcggagcaaaacaacatccacgtgaaggatatt
gtgaaagtcattgatggacctcattcgggtcgtgaaggtgaaattcgccacatcttcaga
ggctttgcttttcttcactgcaagaagctggttgaaaacggaggcatgtttgtttgtaaa
gcgcgccacctcgttctggcgggcggctcaaagcccagagatgtgaccaattttacagtg
ggtggctttgctcctatgagtccacgtatcagcagtccaatgcaccctggaggaggtggt
cagcagcaaaggggcggaggcggaggcggaggcggtggcatgggtcggggccgcgggcga
cgagacaatgatctgattgggcagactgtccgtatatcacagggaccatacaaaggttac
attggagtggtgaaggatgccacagaatcaaccgctagggtagagctccactcaacttgc
cagaccatctctgtggaccggcagcgtctcacaactgttggtggcaaagaaagacaagga
aggagttccacccatttacgaaccccgatgtatggttcccagacacccatttatggaact
ggctcacgtacccccatgtatggtagccagacacccctccatgatggaagccggactcct
cactatggctcccagactcctctgcatgacgggagcaggaccccaggtcaaagcggtgct
tgggaccccaacaatcccaacacaccatcacggcctgatgaggaatatgagtttgcttat
gatgacgagccctctccatctcctcaaggctatggtggtacgcccaacccacagactcct
ggctatccagaagtgccctccccgcaggtcaaccctcagtacaaccctcagactcctggg
actcctgctatgtacaacaccgaccagtactctccatatgcagcaccctctccgcaaggg
tcctaccagcccagccccagcccacagagtttccaccaagtggccccaagcccggtggga
taccaaaacacgcactcacccgccagttaccaccccaccccatcacccatggcctaccag
gccagtccaagccccagtccggtagggtacagtccaatgactcctggagctccatctccg
ggaggctacaaccctcacacccctggatccaacatcgaccaggcctccagtgactgggtc
accactgacatcatggtgcgtgtgaaagacacattcctggacggaggcgtcatcaatcag
accggtatcatccggagtgtcaccggggggatgtgctccgttttcctgcaagacattgag
aaggtcgttagtatttcaagtgaacacttggagcctgttacaccaaccaaaaacaacaag
gtgaaggtgattctgggagaggacagggaggccacaggagtcctgctcagtattgatggt
gaagacggcattgttagaatggagctggatgagcaactgaagattctcaacctccgcttc
cttgggaaattggaagcgtga
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integrated database retrieval system
