Carassius auratus (goldfish): 113058496
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Entry
113058496 CDS
T07313
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
caua
Carassius auratus (goldfish)
Pathway
caua04137
Mitophagy - animal
caua04140
Autophagy - animal
caua04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
113058496
04137 Mitophagy - animal
113058496
04148 Efferocytosis
113058496
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
caua03000
]
113058496
Transcription factors [BR:
caua03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
113058496
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
113058496
NCBI-ProteinID:
XP_026082227
Ensembl:
ENSCARG00000019306
UniProt:
A0A6P6LFC3
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Position
40:complement(8687642..8700215)
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AA seq
633 aa
AA seq
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MVNSAMKRPSLEQRKVRSRDAARSRRSQETEVFYELAHSLPLPRRIASHLDKAAIMRVTL
SYLRMNRLIQSAGPTKTQTEETENPTDAFYQQALAGFILVMTEEGDLVFLSESVSKYIGM
TQLELLGQSVYEFVHPCDQEELRDILTTRPGVSKKKTEKLTEHNFFLRIKSTLTHTGRTV
NIKSANWKVLHCTGHMQTFSGDDENSPPAGSFLTLLCEPIPHPSSVEFPLDSSTFLTRHN
MDLTFTQCDGRVTELVGYQPDDLIGRSAYEFYHALDFDHVTRSLHILFSKGQVCTSHYRF
LAKNGGFVWTETQATVLYNSKTSQPEAVVCLNFILSGVEEADVVFSLEQTCEKPKPRAEK
LSVLEEEEEKDSDMEVESDTAALFLQMKDNPEELLQLAPHSGDTIISLKECVELSFCSPP
SPNTLPESPQDLCTPELRQLLSPIFDRPTNSPPAASPAEEMPMEMEGVEKFFALKPEESI
TLKEQSEDIDELDLDMLAPYISMDDDFQLTFLPSSDMAAPLDMLTNTSRKRCLEDEEEDD
IPILAAKWEKKPKSGSIEEQLLLSHTLLKTLSDDGSEEFEAPPQKRSQLLTDRDPLLGGA
QALCDTAALMRDSFLSRPPDLMRPVAAALPSLT
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggtgaactcagcgatgaaaaggcccagcttggagcagcggaaggtgcgttcacgggac
gcagcgcgcagtaggaggagccaggagactgaggtgttttacgaactggcccactcacta
ccccttccacgacgtatcgcctcccacctggacaaagctgccatcatgagggtgacactc
agctatctgcgcatgaaccgtttgatccaatcagcagggccaaccaaaacacagactgaa
gaaactgagaatcccactgatgccttttatcagcaggcactggcagggtttattctggtg
atgactgaggagggggacttggtcttcctctcagagagtgtcagcaaatacatcggcatg
acacagctggagctgcttggacagagcgtgtatgaatttgttcatccctgtgaccaagaa
gaattgcgagacattctcaccacaagacctggtgtttcaaagaaaaagacagagaagttg
accgaacataattttttccttcggattaagagcacactcacccacacaggaagaacagtt
aatatcaagtccgcaaactggaaggtccttcattgcacaggacacatgcagacgttcagt
ggcgatgatgagaactcgccccctgctggcagcttcctgactttgctgtgcgaacccatt
cctcacccctccagcgttgaattcccactagacagcagcactttcctcacacgccataac
atggacctgactttcacacaatgtgacggacgagtcactgagcttgttggataccaaccc
gatgatctgattggccggtctgcctatgagttttatcacgcccttgattttgatcatgtg
accaggagtttacacatcttgttctccaagggccaggtgtgcaccagccattaccgcttc
ctggctaagaatggaggatttgtctggactgagactcaagccactgtcctctacaacagc
aagacctctcaacccgaggctgtggtctgcctcaactttatcctcagtggtgtggaagag
gcggatgttgtgttctcactggagcagacctgtgagaagccaaagcccagagctgagaag
ctgagcgtgctggaggaagaggaggagaaggactcagacatggaggtggagagcgacact
gcagcgctcttcctccagatgaaggacaacccagaagagttactgcagctggcacctcac
tctggagacacgatcatttctctaaaagagtgtgtggagttgtccttctgctctccacct
agtcccaacactctcccagaaagccctcaggacctctgtacccctgaactccgccagctc
ctttcgccaatattcgacaggcccactaattctccacccgctgcgagccccgctgaagag
atgcccatggagatggaaggggtggagaagttcttcgccctcaaacccgaggaaagcata
actctgaaagaacagtcagaggatatagatgagcttgatttggacatgttagctccatat
atctccatggacgatgacttccagttgaccttcctgccctcgagtgatatggctgcacct
ttagatatgctgaccaacacttcaaggaaacgatgtttggaagatgaggaggaagatgac
attcccatcctggctgccaaatgggagaagaaaccgaagagcggctccatagaggaacag
cttctgctcagccacacattactgaaaaccttgtctgatgatggttcggaagaatttgaa
gcgccacctcaaaagcgaagtcagctcttgaccgacagggacccgttgctgggaggagcg
caggcgttgtgtgatacagcagctctcatgagggacagcttcctgtcacgcccgcctgac
ttaatgaggcctgttgctgcagcattgccctcccttacttga
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