Carassius auratus (goldfish): 113058526
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Entry
113058526 CDS
T07313
Name
(RefSeq) pre-mRNA-processing-splicing factor 8-like
KO
K12856
pre-mRNA-processing factor 8
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113058526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
caua03041
]
113058526
Spliceosome [BR:
caua03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
113058526
Complex C
U5 SnRNP specific factors
113058526
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
113058526
NCBI-ProteinID:
XP_026082273
Ensembl:
ENSCARG00000021445
UniProt:
A0A6P6LCA5
LinkDB
All DBs
Position
40:complement(9977241..9990038)
Genome browser
AA seq
2342 aa
AA seq
DB search
MAAAFPYRGVPGTMPPGVPPPPPAVAPVPDYMTEEKLQEKARKWQQLQAKRYSEKRKFGF
VDAQKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQI
RDVPVLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEE
PPLDYADNILDVEPLEAIQMELDPEEDSSVAEWLYEHQPLKDTTKYVNGTTYRRWQFTLP
MMSTLYRLANQLLTDLVDGNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDW
NEFNDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFD
PLINPISHRHSVKIQEPLPDDDEEFELPEYVEPLLKETPLYTDNTANGIALLWAPRPFNL
RSGRTRRAIDVPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLF
RSFKATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTK
ERKKSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDSFQLADGLQYIFAHVGQLTGMYR
YKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWASGWRVWLFFMRGITPLLERWLG
NLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHL
SESWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCK
KNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYK
HDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKE
VGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVY
KWCQGINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKN
NVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLS
FQDTVTESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKC
WPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFE
CRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGS
TTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPP
VVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQ
PWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYD
KGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGT
YFPTWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQV
QLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKET
IHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDS
HDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGGKPLIQQAMAKI
MKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKT
FEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLP
VEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQ
MVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTD
EEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQT
KEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVS
SDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGT
HQTVHLPNQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTII
ITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMV
PGQVSWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGEIYNADREDM
YA
NT seq
7029 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcattcccctacagaggtgtgcctggaacaatgcctccaggtgttcctcca
ccacctccagctgttgctccagtcccagattacatgactgaggagaaactgcaagaaaaa
gctcggaaatggcagcagcttcaggccaaacggtactcggagaagaggaaatttggcttt
gtggatgctcagaaagaggacatgccacctgagcatgtgcgcaaaattatcagggatcat
ggtgacatgacgaacaggaaatttcgtcacgacaagagggtctaccttggggccctgaaa
tatatgccccatgcagtgctcaaactgctggagaacatgccaatgccctgggagcaaatc
agagatgttcctgtgctctaccacattacaggggccatttcctttgtaaacgaaatccca
tgggtgattgagccggtgtacattgctcagtggggcacaatgtggatcatgatgcgtcgt
gagaagcgagacagacggcacttcaagcgcatgcgtttccccccatttgatgatgaagag
cctccgttggattatgcggacaacatcctggacgttgagcctctggaagctatccagatg
gagctggatcctgaggaggactcctctgttgcagaatggctttatgagcatcagcctctg
aaagacaccacaaaatatgtgaatgggaccacatacaggcgttggcaattcacattgcca
atgatgtccactctttatcgattggctaatcagttgctgacagacttggtggatggaaac
tacttctacttgtttgacttgaaggctttcttcacctctaaagcattgaacatggccatt
ccagggggacccaaatttgagccacttgtcagagacattaacctccaggatgaagactgg
aacgagttcaatgacatcaacaagatcatcatcagacaaccaattaggacagaatacaaa
attgctttcccttacttatacaacaacctgccacatcatgtgcacctcacttggtaccac
acaccgaacgtggtgttcatcaagactgaggatcccgatttgcccgccttctactttgac
cctctgatcaaccccatctcccataggcactctgtcaagatccaagagccactgccagat
gatgatgaggagtttgaactgcctgagtatgtagagccattactgaaagagacgcctctc
tacactgacaacacggctaatggaattgcgctgttgtgggcgcctcgtccatttaatctt
cgctcaggaagaaccagacgggccattgatgtgcctctcatcaaaaattggtatcgtgag
cactgtcctgcaggccagcctgtgaaggtgcgcgtgtcttaccagaagctcctgaagtac
tatgtgctgaatgcgctaaaacacagaccacctaaggcacagaaaaagagatacttgttc
cgctctttcaaagccaccaaattcttccagtccacgaagctggattgggtagaagttggt
ctccaggtgtgccggcagggttacaacatgctgaacctgctgattcacagaaagaacctc
aactaccttcacttggactacaatttcaacttgaagcctgtgaaaaccctcaccacaaag
gaacgtaagaagtccagattcggcaatgcgttccacttgtgccgcgaggttctgcgtttg
agcaagcttgttgtggacagtcatgtgcagtacaggcttggaaatgttgactctttccag
ctggcagatggattgcagtacatctttgcccatgtaggtcaattgactggcatgtaccgc
tacaagtacaagctcatgaggcagattaggatgtgcaaggacctgaagcatctcatttac
taccgcttcaacacaggtccagttggaaaaggtccagggtgtgggttctgggcttcagga
tggagagtctggctgttcttcatgcgaggcatcacgcctcttctggagcggtggcttggg
aatcttctggccaggcagtttgaaggtcgacactccaagggtgttgcaaagaccgtgacc
aaacagcgtgtggaatctcactttgatctggagctgagagctgctgtgatgcatgacatc
ctggatatgatgcctgagggtatcaagcagaacaaggccaggaccatcttgcagcatctc
agtgagtcatggagatgctggaaggccaacatcccttggaaggttcctgggcttccaaca
cccattgagaacatgattctccgctacgtgaaggccaaagctgactggtggaccaacaca
gcccactataaccgtgaaagaatcagaagaggagcgactgtggataagactgtgtgcaag
aagaacctgggacgtctcactcgactctatctaaaggcagagcaggagagacagcacaat
tacttgaaggatggaccttacatcacagctgaggaggctgtggccatctacaccaccaca
gtgcactggctggagagtcgtcgtttctctccgatccccttccctcctctgtcttacaaa
catgacactaagctgctcatcttggctttggagagactcaaggaggcttacagtgtgaag
tcaaggctgaaccagtcacagcgtgaggagttaggtctgattgagcaggcctatgacaac
cctcatgaagctctgtcaagaatcaaacgtcaccttctcactcagagagccttcaaagag
gtgggcattgaattcatggacctttacagtcacttggtgccggtttatgatgttgaacca
ctggaaaagatcactgatgcatacctggatcagtacctctggtatgaggcagacaagcgc
aggctttttcccccctggatcaaaccagctgacacagagccacctccactgctggtgtac
aaatggtgccaaggaatcaacaacctgcaggatgtgtgggagacggcagaaggcgaatgc
aacgtcatgctggagtctcgttatgagaagatgtatgagaagattgacttgacgctgctg
aacaggcttctgcgtctcattgttgatcacaacattgcagattacatgacggccaaaaac
aacgttgtcattaactataaggacatgaaccacacaaactcgtacggtatcatccgcggc
ctgcagtttgcctctttcatcgtgcagtactatgggttggtgatggacctgctggtgctg
ggtctgcacagagccagtgagatggctggacctcctcagatgcccaatgactttctcagc
ttccaggacacggtcactgagagtgcccatcctatacgcctttactgcagatacatagac
cgcattcacatcttcttcaggttctctgctgatgaggcgagagatctgatccagaggtac
ttgactgagcacccagaccccaacaatgagaacattgttggctacaacaataagaaatgc
tggccaagagatgctaggatgagactgatgaaacatgatgtgaacttgggccgtgctgtg
ttctgggacatcaagaatcgtctgcctcgttctgtgaccacagttcagtgggagaacagc
tttgtgtctgtgtacagcaaggacaaccccaacctacttttcaacatgtgtggctttgag
tgtcgcatcctccccaagtgccgcactagttatgaggagtttacacacaaagatggtgtg
tggaatttgcagaacgaggtaacaaaggaaaggacagcacagtgtttcctgcgtgtagat
gatgagtcaatgcagaggttccacaacagagtgcgacagattctgatggcttctgggtcc
accaccttcaccaagattgtgaacaagtggaacactgctctgattggtctgatgacatac
ttccgtgaagctgtggtcaacactcaagagcttttggacctgttggtgaagtgtgagaat
aagatccaaacccgtatcaagattggattgaactccaaaatgcctagtcgtttccctcct
gtggtgttttacacccctaaagagttgggtggactgggaatgctttccatgggacacgta
ctgattccacagtctgaccttaggtggtccaaacagaccgatgtgggcatcactcatttc
cgttccggtatgagccatgaggaggatcagctgattcctaatctgtaccgctacatccag
ccatgggagagcgagttcattgactcccagagggtttgggcagaatacgcactcaaacgt
caggaagccattgctcagaacagacgtttgacactggaggatctggaggactcctgggac
agaggtattccacgtatcaacacactcttccagaaggacagacacactctagcttatgac
aagggttggagagtcagaacggactttaagcagtaccaggtgttgaagcaaaatcctttc
tggtggactcatcaaaggcatgatgggaaattgtggaatttaaacaactaccgtaccgac
atgatccaggcacttggaggggtggaaggcattcttgagcacacgctcttcaagggaacc
tacttccccacctgggagggtctcttctgggagaaggccagtggtttcgaagagtccatg
aaatggaagaaactcaccaatgctcagagatctggtctgaaccagattcctaatcgacga
tttaccttgtggtggtctcctacaatcaacagagccaatgtatacgtgggtttccaggtg
cagttggacctcactggaatcttcatgcatggtaaaatcccaactctcaagatctctctg
atccagatcttccgagctcacttgtggcagaagattcatgagagcgttgtcatggatctc
tgtcaggtgtttgaccaagagctggatgctttggagattgagacagtccagaaagagaca
atccatcccaggaagtcttacaagatgaattcctcctgtgccgacattctgttgtttgcc
tcctacaagtggaatgtctctcgcccctcgcttctagcagactccaaggatgttatggac
agcaccaccacacagaagtactggattgacattcagctcagatggggtgactacgactcc
catgacattgagcgatatgccagggccaagttcttggattacaccactgacaatatgagt
atttacccatcacccactggagtcctgattgccattgatctggcatacaaccttcacagt
gcttatggtaactggttccctggaggcaagcccttgatccagcaggccatggcgaagata
atgaaggccaacccagctctgtatgtgctgagagagcgaatccgcaaaggtctgcaactc
tactcttcagagcccactgagccttacctgtcttcccagaactatggagagctgttctcc
aaccagatcatctggtttgtggatgacaccaatgtgtatagagtcaccatccacaagacc
tttgaaggaaacttgacgacaaaaccaatcaatggagccattttcattttcaaccccaga
actggacagcttttcctgaagatcattcacacatctgtatgggcaggacaaaagcgtctt
gggcagttggctaagtggaagactgctgaagaagtggctgccctgatccgatcgcttcct
gttgaagagcagcccaaacagattattgtgaccaggaagggcatgttggatcctcttgag
gtgcacttgctggacttccccaatattgtaatcaagggctctgagctccagctgcccttc
caggcctgtctgaaagtggagaagtttggagacctcattctgaaggccacagagcctcag
atggtcctgttcaatctgtatgacgactggctgaagaccatctcctcttacactgcattc
tctcgtttgatcttaatcctgagagcacttcatgtcaacaatgaccgtgccaaagttatc
ctgaagcctgacaagaccacaatcactgagccccaccacatctggcccactttaaccgat
gaggagtggatcaaagtagaggtgcagctcaaagatctcatcctggctgactatggcaag
aagaacaatgtgaatgtggcatctttgacccagtctgaaatcagggacatcatcctgggt
atggagatctctgctccatcccagcagcgacagcagattgctgagattgagaaacagacc
aaagagcagtctcagctaacagccacacaaactcgcaccgtcaacaaacacggagatgag
attattacctccaccaccagcaactatgagacacagaccttctcttccaaaacggaatgg
agagttagggcgatttctgctgccaacttgcacttacgaactaaccacatctacgtgtca
tcggatgacatcaaagaaactggctacacttacattctgcccaagaacgttctgaagaag
ttcatttgcatctcagatctccgtgctcagattgcaggttatctgtatggaaccagccct
ccagataaccctcaggtaaaggaaatccgctgcattgtgatggtgccacagtgggggaca
catcagaccgttcatctgcccaaccagctgccacagcacgagtacttgaaggaaatggaa
cctcttggatggatccatacacagcccaatgaatcgccccagctctctcctcaggatgta
accacccatgcaaaggtcatggctgacaacccatcctgggatggcgagaagactatcatt
attacttgcagtttcacccctggttcctgcacgctgacggcctacaaactgactcccagt
ggatacgagtggggtcgacaaaacacagataaaggaaataaccccaaaggttacttgccc
tctcactatgaaagggtccaaatgcttttgtctgaccgtttccttggcttcttcatggtg
cctggccaagtctcctggaactacaacttcatgggtgttcgccatgatcccaacatgaag
tatgacctacagttggccaacccaaaagagttctaccatgaagttcacaggccatctcac
ttcctcaactttgcttctctgcaggagggtgaaatctacaatgctgatcgtgaagatatg
tatgcctaa
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integrated database retrieval system
