Carassius auratus (goldfish): 113058753
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Entry
113058753 CDS
T07313
Name
(RefSeq) collagen alpha-4(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
caua
Carassius auratus (goldfish)
Pathway
caua04382
Cornified envelope formation
caua04510
Focal adhesion
caua04512
ECM-receptor interaction
caua04518
Integrin signaling
caua04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113058753
04518 Integrin signaling
113058753
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113058753
09142 Cell motility
04820 Cytoskeleton in muscle cells
113058753
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
113058753
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
caua04147
]
113058753
00536 Glycosaminoglycan binding proteins [BR:
caua00536
]
113058753
Exosome [BR:
caua04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113058753
Glycosaminoglycan binding proteins [BR:
caua00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113058753
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113058753
NCBI-ProteinID:
XP_026082726
UniProt:
A0A6P6LGW0
LinkDB
All DBs
Position
40:complement(18104046..18132497)
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AA seq
1665 aa
AA seq
DB search
MSRPHRIASTSHLFFRRLLFALMTIHTALGGDKTERCDGRDCSVCQCFPPKGERGNPGVL
GQQGPQGPRGLPGPRGLNGEKGRSGPVGLPGVSGPKGDQGFQGEKGHAALDGVPGHPGPG
GSPGFPGKDGCNGARGKLGLNGEIGRPGLPGAKGLPGLKGAKGDTSTSLTFIPGTPGDDG
LSGISGPHGLKGLCGPGGPPGKMGPDGFMGLQGLSGRRGPPGDPGRLLPGPKGDEGDHGP
QGEPGPFEYVEPNPEDCVKGDKGKKGPRGICGVPGPEGCEGPPGEEGQKGIIGLSGPRGL
PGCPGRRSSPGPKGPCGDIGLPGLCGIQGPKGCSGDPGPKGNPECYYNHVIGPPGDRGLP
CAAGLPGDRGMPGIPGPPGDSGACITGPEGECGLPGLNGLKGEKGDPGNLCGSLLNGEPG
KPGCPGPKGQCGNPGNSVCGYYCLTGERGETGQGGYRGPPGLKGVQGRKGPDGGCACDPL
GDLPGDPGPPGPPGVPGCPGKTGCQGPPGDVGPTGKMGLRGVTGPRGFIGVRGAKGEKGD
VMMMCRKGDKGDAGSVGSCGKPGCSGREGADGKIGAPGDPGPMGDCIVGPPGDRGCPGAA
GVRGVRGPAGLPGPNMMGSVGRRGQQGCQGPQGQTGPPGPKGVQGDTLPCGPGIRGAPGC
KGMAGCKGEKGKLGNPGCIGQNGPCGPKGEIGDPGDCRVTGLTGPVGCSGDPGDTGPDGQ
SVCGSPGTPGNRGCQGLKGCSGDCITGAPGPKGPSGIQGCQGPKGVPGPTGPNGLQGACG
VPGFPGRKGENGIDGTPGAPGCPGGRPEHCDKGQAGPPGNTGPPGFTGPRGCPGEKGSPG
EPGSSCIGAKGQCGMLGTPGNQGCAGLQGPPGFEGDCGNPGCPGPKGLPGCPGQDGCPGN
KGRTGPLGPPGPKGIRGFSGYAGCPGVNGTKGQKGCIGPPGPLGDITPVLLKGQVGPPGP
GGENGFCGERGNKGDPGPPGQPGCAGHNGPPGSECGQCGPAGIPGLCGVPGARGQRGPKG
IVGFPGDNGDQGDPGLCGLPGTPGFPGFDGPKGDRGESICEPGLIGEIGPCGDRGVSAPP
GGEGDCGDPGPQGPRGCSGPPGPPGNNGLTGPPGVVGPPGPCGRHGPEGPPGCPGPPGPK
GNPGRIGLRGPPGPPGLHGLDGLEGYNGEKGCRGQGINGCRGNKGLTGDKGTPGDPGLRG
PSQTGVRGPNGKCGCQGDPGPMGPPGCRGPECKTPKHGPCGERGCAGPDGPPGLKGEQGE
AGCVFTVNGDCGDPGCKGDPGCKGERGSCGLSGLPGCEGLKGPKGERGQCGLMGLPGLPG
TRGDCGPRGLCGPKGDIGDPGLKGDPGTVIIPPTPCPLLPGPPGAPGAPGPVGEAGEHGP
NGTEGPNGIKGQKGDSGISGPTGPEGPQGLSGNPGEIGEKGAKGSQGPQGSVGDEGPPGP
SSSGFLLVIHSQSEIVPTCPSGLAELWNGYSLLYLEAQERAHIQDLGQAGSCLRMFSTLP
FSCCNMNGCDYASRNDKSYWLSTNASIPSNSTLRGMEIQPHISRCVVCEVSSPAITLHSQ
DGNTPECPFNWRTLWVGYSFLMHTGSGDEGGGPSLASTGSCLQEFHSQPFVECQGPLGTC
QYSPTFYSFWLTRVNMEPFNSDPYSTVLTEENQLDSISTCSVCVT
NT seq
4998 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgtccccaccggatcgcctccaccagccaccttttcttcaggaggcttttattt
gcacttatgaccatacacacagcattggggggagacaagacagaaaggtgcgacggtcga
gactgcagcgtctgccagtgtttcccccccaaaggagagagggggaatcctggtgtgtta
ggtcagcagggcccacaggggcctcggggtttgcctggcccccgaggacttaatggtgaa
aagggtcgaagtggacccgtaggattgcctggggtctccggcccgaaaggagaccaggga
tttcaaggagaaaaaggccatgctgcattagatggagtgcctggtcatccagggcctggt
ggttctcctgggtttccagggaaggatggctgtaatggagccagagggaaattagggttg
aatggtgagataggacgacccgggctcccaggagccaagggactacctgggttaaaagga
gccaaaggagacacgtctacaagtttaactttcattcctggtacacctggtgatgatgga
ctttctggaatctctggaccacacggactgaaaggtttatgtggcccaggaggtcctcca
ggaaaaatgggacctgatggatttatgggtttacaaggattatcaggtcgaagaggccca
ccgggagacccaggaaggttactaccaggaccgaaaggagatgagggcgaccacggtcct
cagggtgaaccaggtccatttgaatatgtggagcctaacccagaagactgtgtaaaaggc
gataaggggaaaaaaggaccgagaggaatttgtggggtacctgggccagagggttgtgaa
gggcctccaggagaagaaggacagaaaggcataattgggctctctggtcccagaggcctt
cctggatgtccaggcagaagaagctctccaggacctaaaggtccatgtggggatattggt
cttcctggtctatgtggcatccaagggccaaagggctgctcaggtgaccccggacctaaa
ggaaacccagagtgctattacaaccatgtgataggaccacctggagatcgtgggcttcct
tgtgcagcgggacttcctggggatagagggatgccgggtatacctggaccccctggtgat
tcaggagcatgtataacaggtccagagggtgaatgtggtctgccaggtcttaatggactc
aaaggagaaaaaggtgacccaggaaacctatgcgggtcactcttaaatggggaacctgga
aaaccgggctgccctggacccaaaggacaatgtggaaatcctgggaattctgtttgtggt
tactactgcctgactggtgaacgtggagaaactggacagggtggatatagaggacctcct
ggattaaaaggtgttcagggaagaaaaggtcctgatgggggatgtgcatgtgacccactt
ggtgatttaccaggagatccgggccctccaggccctcctggtgtccctggttgtcctggg
aaaacaggctgtcagggtcctcctggcgatgttggacccactggaaagatgggtttgaga
ggtgtaactggtcccagaggcttcataggtgtcagaggggctaaaggagagaaaggagat
gtgatgatgatgtgcagaaagggggataaaggtgatgcaggatctgttggatcatgtgga
aaaccaggatgtagtgggagggaaggagctgatgggaagattggtgcccctggagatcct
ggacctatgggagattgtattgttggtccaccgggtgacagggggtgtccaggggctgct
ggtgtgaggggtgtaagaggtccagctggtcttcctggcccgaatatgatggggtcagtt
gggcgacgggggcaacaagggtgccaaggacctcaaggccagacgggacctcctggtcct
aaaggcgttcaaggtgatacactgccctgtggacctggcatacgtggagcccctggttgc
aaagggatggctggttgtaaaggtgagaaaggtaagcttggaaatccaggatgcatcgga
cagaatggaccatgtggtcccaagggagagattggagaccctggtgactgtagggtaaca
ggtcttacaggtccagttggatgttcaggagatcctggtgacactggcccagatggccag
agtgtttgtggctctcctggcacacctggcaatcgtggatgccagggtctgaaagggtgt
tctggcgactgtattacaggggctccaggaccaaaagggccttctggaattcagggatgt
cagggccctaaaggtgtccctggacctactggaccaaatggattgcaaggtgcatgtgga
gttcctggttttcctggtagaaaaggggaaaacggaatagatggtacaccaggagcccct
ggttgcccaggtgggagaccagagcactgtgacaaaggacaagctggtccacctggtaat
acaggaccaccaggcttcactggaccaagagggtgccctggagagaaaggatcgcccggg
gagccaggatcttcatgcattggagccaaaggacaatgtggtatgcttggtaccccgggc
aatcaaggatgtgcaggccttcagggacctccaggattcgaaggggactgtggaaaccct
ggatgccctggaccaaagggtttgcctggatgtcctggtcaagatggctgtcctggcaac
aaagggaggactggccctttagggcctcctggaccgaaaggcatcaggggtttcagtgga
tatgcaggttgcccaggggtaaacggaaccaagggccagaaaggatgcattggacctcca
ggacctctgggagacataactccagtgctattgaaaggccaggtagggccacctggacct
ggtggagagaatggtttctgtggagaaaggggtaataagggggacccaggtccgcctgga
caacctgggtgtgcgggacataatggacctcctgggtctgaatgtggccagtgtggaccg
gcaggcattcctgggctgtgcggtgtgcctggtgcacgtgggcagcgtgggccaaaggga
attgtgggattcccaggtgataatggtgatcagggtgatcctggattgtgtggtctgcca
ggaacccctggtttccctgggtttgatggtcctaaaggtgacagaggtgaatctatttgt
gagccaggactaataggtgagatagggccatgtggagacagaggcgtgtcagctcctcct
ggtggtgaaggagactgcggtgaccctggcccacaagggcctaggggatgctctggtcca
cctgggccacctggaaacaatggcctgactggacctccaggagtcgttgggcccccaggt
ccttgtggaagacatggtccagaaggtccccctggatgtccaggtcccccgggccctaag
ggaaacccaggaaggattggccttagaggacctccggggcccccaggactccatggactg
gacggcctggaggggtacaacggtgaaaaggggtgtcgaggacagggtataaacggttgt
aggggcaataaagggctgaccggagacaagggcactccaggagacccagggttgcgaggc
ccatcacaaacaggtgttcgaggtcccaatggaaagtgtgggtgccaaggagaccctggt
ccaatgggtcctccaggctgtcgtggtccagaatgtaagactcctaaacatggaccttgt
ggagaacggggttgtgctgggccagatggacctccagggctcaagggagagcaaggagag
gcaggctgtgtgttcacagtgaacggggattgtggtgacccaggttgtaaaggagaccca
gggtgtaaaggagaaagaggatcgtgtgggctcagtggcctcccagggtgcgaaggacta
aaaggtccaaaaggtgaaagaggacaatgtggacttatgggccttccaggactccctggc
accagaggcgattgtggaccccgaggactctgtggtccaaaaggagacataggggaccca
gggcttaaaggagaccctgggactgtcataattccccctactccttgtccccttcttccg
ggtcctcctggtgctcctggtgcacctggcccggttggtgaagctggtgaacatggacct
aatggtactgagggtccaaatggtattaagggacaaaaaggagattctgggatttctgga
cctactgggccagaaggaccacagggactatctggaaaccctggagagatcggcgagaaa
ggagcaaaaggatctcagggaccacaaggatcagttggtgatgagggtcctcctggaccg
tcttcctctggcttccttttggtgatacacagccagtctgagattgtgcccacttgtcct
tcgggtctagcagagttatggaacggctacagtctactatatctggaggctcaggaaaga
gcacacatacaagacctgggccaagcaggttcctgtttacgtatgttcagcacactacca
ttctcctgctgtaatatgaatggatgtgattatgccagccgcaacgacaaatcttattgg
ctgtctacaaacgcctcaattccctcgaattccaccctgagggggatggaaattcaacca
cacatcagcaggtgtgtggtgtgtgaggtgtcatcgccagccattacattacacagtcaa
gacgggaatacaccagagtgtccattcaattggagaacactctgggtcggatattcattt
cttatgcatacaggatcaggggacgagggagggggaccgtctctggcatcaacaggaagc
tgtttgcaggaattccacagtcagccgtttgtggagtgccaaggtccgcttggcacgtgc
caatattcccccaccttttacagtttctggctgactagagtgaacatggagccctttaat
tctgatccttacagtactgttctcactgaagagaaccagctcgatagcatcagcacatgc
agcgtctgcgtgacttaa
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integrated database retrieval system
