Carassius auratus (goldfish): 113058753
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Entry
113058753 CDS
T07313
Name
(RefSeq) collagen alpha-4(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
caua
Carassius auratus (goldfish)
Pathway
caua04510
Focal adhesion
caua04512
ECM-receptor interaction
caua04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113058753
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113058753
09142 Cell motility
04820 Cytoskeleton in muscle cells
113058753
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
caua04147
]
113058753
00536 Glycosaminoglycan binding proteins [BR:
caua00536
]
113058753
Exosome [BR:
caua04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113058753
Glycosaminoglycan binding proteins [BR:
caua00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113058753
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113058753
NCBI-ProteinID:
XP_026082726
UniProt:
A0A6P6LGW0
LinkDB
All DBs
Position
40:complement(18104046..18132497)
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AA seq
1665 aa
AA seq
DB search
MSRPHRIASTSHLFFRRLLFALMTIHTALGGDKTERCDGRDCSVCQCFPPKGERGNPGVL
GQQGPQGPRGLPGPRGLNGEKGRSGPVGLPGVSGPKGDQGFQGEKGHAALDGVPGHPGPG
GSPGFPGKDGCNGARGKLGLNGEIGRPGLPGAKGLPGLKGAKGDTSTSLTFIPGTPGDDG
LSGISGPHGLKGLCGPGGPPGKMGPDGFMGLQGLSGRRGPPGDPGRLLPGPKGDEGDHGP
QGEPGPFEYVEPNPEDCVKGDKGKKGPRGICGVPGPEGCEGPPGEEGQKGIIGLSGPRGL
PGCPGRRSSPGPKGPCGDIGLPGLCGIQGPKGCSGDPGPKGNPECYYNHVIGPPGDRGLP
CAAGLPGDRGMPGIPGPPGDSGACITGPEGECGLPGLNGLKGEKGDPGNLCGSLLNGEPG
KPGCPGPKGQCGNPGNSVCGYYCLTGERGETGQGGYRGPPGLKGVQGRKGPDGGCACDPL
GDLPGDPGPPGPPGVPGCPGKTGCQGPPGDVGPTGKMGLRGVTGPRGFIGVRGAKGEKGD
VMMMCRKGDKGDAGSVGSCGKPGCSGREGADGKIGAPGDPGPMGDCIVGPPGDRGCPGAA
GVRGVRGPAGLPGPNMMGSVGRRGQQGCQGPQGQTGPPGPKGVQGDTLPCGPGIRGAPGC
KGMAGCKGEKGKLGNPGCIGQNGPCGPKGEIGDPGDCRVTGLTGPVGCSGDPGDTGPDGQ
SVCGSPGTPGNRGCQGLKGCSGDCITGAPGPKGPSGIQGCQGPKGVPGPTGPNGLQGACG
VPGFPGRKGENGIDGTPGAPGCPGGRPEHCDKGQAGPPGNTGPPGFTGPRGCPGEKGSPG
EPGSSCIGAKGQCGMLGTPGNQGCAGLQGPPGFEGDCGNPGCPGPKGLPGCPGQDGCPGN
KGRTGPLGPPGPKGIRGFSGYAGCPGVNGTKGQKGCIGPPGPLGDITPVLLKGQVGPPGP
GGENGFCGERGNKGDPGPPGQPGCAGHNGPPGSECGQCGPAGIPGLCGVPGARGQRGPKG
IVGFPGDNGDQGDPGLCGLPGTPGFPGFDGPKGDRGESICEPGLIGEIGPCGDRGVSAPP
GGEGDCGDPGPQGPRGCSGPPGPPGNNGLTGPPGVVGPPGPCGRHGPEGPPGCPGPPGPK
GNPGRIGLRGPPGPPGLHGLDGLEGYNGEKGCRGQGINGCRGNKGLTGDKGTPGDPGLRG
PSQTGVRGPNGKCGCQGDPGPMGPPGCRGPECKTPKHGPCGERGCAGPDGPPGLKGEQGE
AGCVFTVNGDCGDPGCKGDPGCKGERGSCGLSGLPGCEGLKGPKGERGQCGLMGLPGLPG
TRGDCGPRGLCGPKGDIGDPGLKGDPGTVIIPPTPCPLLPGPPGAPGAPGPVGEAGEHGP
NGTEGPNGIKGQKGDSGISGPTGPEGPQGLSGNPGEIGEKGAKGSQGPQGSVGDEGPPGP
SSSGFLLVIHSQSEIVPTCPSGLAELWNGYSLLYLEAQERAHIQDLGQAGSCLRMFSTLP
FSCCNMNGCDYASRNDKSYWLSTNASIPSNSTLRGMEIQPHISRCVVCEVSSPAITLHSQ
DGNTPECPFNWRTLWVGYSFLMHTGSGDEGGGPSLASTGSCLQEFHSQPFVECQGPLGTC
QYSPTFYSFWLTRVNMEPFNSDPYSTVLTEENQLDSISTCSVCVT
NT seq
4998 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgtccccaccggatcgcctccaccagccaccttttcttcaggaggcttttattt
gcacttatgaccatacacacagcattggggggagacaagacagaaaggtgcgacggtcga
gactgcagcgtctgccagtgtttcccccccaaaggagagagggggaatcctggtgtgtta
ggtcagcagggcccacaggggcctcggggtttgcctggcccccgaggacttaatggtgaa
aagggtcgaagtggacccgtaggattgcctggggtctccggcccgaaaggagaccaggga
tttcaaggagaaaaaggccatgctgcattagatggagtgcctggtcatccagggcctggt
ggttctcctgggtttccagggaaggatggctgtaatggagccagagggaaattagggttg
aatggtgagataggacgacccgggctcccaggagccaagggactacctgggttaaaagga
gccaaaggagacacgtctacaagtttaactttcattcctggtacacctggtgatgatgga
ctttctggaatctctggaccacacggactgaaaggtttatgtggcccaggaggtcctcca
ggaaaaatgggacctgatggatttatgggtttacaaggattatcaggtcgaagaggccca
ccgggagacccaggaaggttactaccaggaccgaaaggagatgagggcgaccacggtcct
cagggtgaaccaggtccatttgaatatgtggagcctaacccagaagactgtgtaaaaggc
gataaggggaaaaaaggaccgagaggaatttgtggggtacctgggccagagggttgtgaa
gggcctccaggagaagaaggacagaaaggcataattgggctctctggtcccagaggcctt
cctggatgtccaggcagaagaagctctccaggacctaaaggtccatgtggggatattggt
cttcctggtctatgtggcatccaagggccaaagggctgctcaggtgaccccggacctaaa
ggaaacccagagtgctattacaaccatgtgataggaccacctggagatcgtgggcttcct
tgtgcagcgggacttcctggggatagagggatgccgggtatacctggaccccctggtgat
tcaggagcatgtataacaggtccagagggtgaatgtggtctgccaggtcttaatggactc
aaaggagaaaaaggtgacccaggaaacctatgcgggtcactcttaaatggggaacctgga
aaaccgggctgccctggacccaaaggacaatgtggaaatcctgggaattctgtttgtggt
tactactgcctgactggtgaacgtggagaaactggacagggtggatatagaggacctcct
ggattaaaaggtgttcagggaagaaaaggtcctgatgggggatgtgcatgtgacccactt
ggtgatttaccaggagatccgggccctccaggccctcctggtgtccctggttgtcctggg
aaaacaggctgtcagggtcctcctggcgatgttggacccactggaaagatgggtttgaga
ggtgtaactggtcccagaggcttcataggtgtcagaggggctaaaggagagaaaggagat
gtgatgatgatgtgcagaaagggggataaaggtgatgcaggatctgttggatcatgtgga
aaaccaggatgtagtgggagggaaggagctgatgggaagattggtgcccctggagatcct
ggacctatgggagattgtattgttggtccaccgggtgacagggggtgtccaggggctgct
ggtgtgaggggtgtaagaggtccagctggtcttcctggcccgaatatgatggggtcagtt
gggcgacgggggcaacaagggtgccaaggacctcaaggccagacgggacctcctggtcct
aaaggcgttcaaggtgatacactgccctgtggacctggcatacgtggagcccctggttgc
aaagggatggctggttgtaaaggtgagaaaggtaagcttggaaatccaggatgcatcgga
cagaatggaccatgtggtcccaagggagagattggagaccctggtgactgtagggtaaca
ggtcttacaggtccagttggatgttcaggagatcctggtgacactggcccagatggccag
agtgtttgtggctctcctggcacacctggcaatcgtggatgccagggtctgaaagggtgt
tctggcgactgtattacaggggctccaggaccaaaagggccttctggaattcagggatgt
cagggccctaaaggtgtccctggacctactggaccaaatggattgcaaggtgcatgtgga
gttcctggttttcctggtagaaaaggggaaaacggaatagatggtacaccaggagcccct
ggttgcccaggtgggagaccagagcactgtgacaaaggacaagctggtccacctggtaat
acaggaccaccaggcttcactggaccaagagggtgccctggagagaaaggatcgcccggg
gagccaggatcttcatgcattggagccaaaggacaatgtggtatgcttggtaccccgggc
aatcaaggatgtgcaggccttcagggacctccaggattcgaaggggactgtggaaaccct
ggatgccctggaccaaagggtttgcctggatgtcctggtcaagatggctgtcctggcaac
aaagggaggactggccctttagggcctcctggaccgaaaggcatcaggggtttcagtgga
tatgcaggttgcccaggggtaaacggaaccaagggccagaaaggatgcattggacctcca
ggacctctgggagacataactccagtgctattgaaaggccaggtagggccacctggacct
ggtggagagaatggtttctgtggagaaaggggtaataagggggacccaggtccgcctgga
caacctgggtgtgcgggacataatggacctcctgggtctgaatgtggccagtgtggaccg
gcaggcattcctgggctgtgcggtgtgcctggtgcacgtgggcagcgtgggccaaaggga
attgtgggattcccaggtgataatggtgatcagggtgatcctggattgtgtggtctgcca
ggaacccctggtttccctgggtttgatggtcctaaaggtgacagaggtgaatctatttgt
gagccaggactaataggtgagatagggccatgtggagacagaggcgtgtcagctcctcct
ggtggtgaaggagactgcggtgaccctggcccacaagggcctaggggatgctctggtcca
cctgggccacctggaaacaatggcctgactggacctccaggagtcgttgggcccccaggt
ccttgtggaagacatggtccagaaggtccccctggatgtccaggtcccccgggccctaag
ggaaacccaggaaggattggccttagaggacctccggggcccccaggactccatggactg
gacggcctggaggggtacaacggtgaaaaggggtgtcgaggacagggtataaacggttgt
aggggcaataaagggctgaccggagacaagggcactccaggagacccagggttgcgaggc
ccatcacaaacaggtgttcgaggtcccaatggaaagtgtgggtgccaaggagaccctggt
ccaatgggtcctccaggctgtcgtggtccagaatgtaagactcctaaacatggaccttgt
ggagaacggggttgtgctgggccagatggacctccagggctcaagggagagcaaggagag
gcaggctgtgtgttcacagtgaacggggattgtggtgacccaggttgtaaaggagaccca
gggtgtaaaggagaaagaggatcgtgtgggctcagtggcctcccagggtgcgaaggacta
aaaggtccaaaaggtgaaagaggacaatgtggacttatgggccttccaggactccctggc
accagaggcgattgtggaccccgaggactctgtggtccaaaaggagacataggggaccca
gggcttaaaggagaccctgggactgtcataattccccctactccttgtccccttcttccg
ggtcctcctggtgctcctggtgcacctggcccggttggtgaagctggtgaacatggacct
aatggtactgagggtccaaatggtattaagggacaaaaaggagattctgggatttctgga
cctactgggccagaaggaccacagggactatctggaaaccctggagagatcggcgagaaa
ggagcaaaaggatctcagggaccacaaggatcagttggtgatgagggtcctcctggaccg
tcttcctctggcttccttttggtgatacacagccagtctgagattgtgcccacttgtcct
tcgggtctagcagagttatggaacggctacagtctactatatctggaggctcaggaaaga
gcacacatacaagacctgggccaagcaggttcctgtttacgtatgttcagcacactacca
ttctcctgctgtaatatgaatggatgtgattatgccagccgcaacgacaaatcttattgg
ctgtctacaaacgcctcaattccctcgaattccaccctgagggggatggaaattcaacca
cacatcagcaggtgtgtggtgtgtgaggtgtcatcgccagccattacattacacagtcaa
gacgggaatacaccagagtgtccattcaattggagaacactctgggtcggatattcattt
cttatgcatacaggatcaggggacgagggagggggaccgtctctggcatcaacaggaagc
tgtttgcaggaattccacagtcagccgtttgtggagtgccaaggtccgcttggcacgtgc
caatattcccccaccttttacagtttctggctgactagagtgaacatggagccctttaat
tctgatccttacagtactgttctcactgaagagaaccagctcgatagcatcagcacatgc
agcgtctgcgtgacttaa
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integrated database retrieval system
