Carassius auratus (goldfish): 113059261
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Entry
113059261 CDS
T07313
Name
(RefSeq) protein SMG5-like isoform X1
KO
K11125
protein SMG5
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113059261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113059261
03032 DNA replication proteins [BR:
caua03032
]
113059261
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
113059261
mRNA cycle factors
Common to processing body (P body) and stress granule
113059261
DNA replication proteins [BR:
caua03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
113059261
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
DUF1515
Motif
Other DBs
NCBI-GeneID:
113059261
NCBI-ProteinID:
XP_026083419
Ensembl:
ENSCARG00000050312
UniProt:
A0A6P6LFR0
LinkDB
All DBs
Position
41:21504623..21525990
Genome browser
AA seq
1098 aa
AA seq
DB search
MSGPGQDSESEAKVLHIKRLYRAVVETVHKLDIIIGGKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFFQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSATPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVAPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSET
PFDGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSKDIKRLLVSFMYLQSLLQPKNS
LMETELTSLCQSVLEDFNLVLFYLPLPAHGSQLASEEEEEHDSVCSVLPDSLIFKMVVTC
LMVVHSLKRGASKQYSASIAFTLALFSHLVNHVNIRLQAELEEGESDVPPLRTDNTGTDD
ADARDHGSAALSEERKLQNGSLEEDDEEEDEEGKNEEDEPKGNGRTPGTKKSLEKKRSAE
EKQKQKRKFSRLSMLRRRRCAHKEDESDLSEGFESDEEESGEGRGPVDGLESARVQINSL
GREGRRGPLPEDGSWESSSEEDEGGTAFDVDTDSDMNSQESRSDLEDMEDAENAPQQQQQ
QEEDEQPQPSREENSTPPVTNGPSVSNDTSISSNLQAMSSQLFQAKRCFRLAPTFSNVLL
RPAAPTNPIPDSNPAPVQEAPPPTGEIPRSMSPEIANGTNDNDPDSESEGSEHSNHSLHS
EKTLSERLEILTNQGLIQVVKVFLDWLRTNTDIILMCAQSSQSLWNRLSVLLNLLPVGSK
MLETDLGLDKHVTDLLNECEQPGLVQTLLLPEDLALRHLPALSVAHRRLDFTGQRPPLTP
LDECVVRVCCIRSFGHFLTNLQCNVLHFNPEAGIFTSISQSEQDNLVQQAKAQFRMAEEE
ARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSSMSPYLVPDTTVLCQHLGLLRQLAASG
CFIIIIPRTVIDGLDLLKKENSGARDGIRFLETEFRKGNRYIRCQKESGRSFERDKLKRQ
DIEAWHLYKMVDSCRQLTGSQSSGDEDTAGMVTILTGHSLEELTERSASMKAAVQAVAAA
GMELKSITDFCRQWKEMG
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaccgggtcaagacagcgagtcagaggccaaagtgcttcatattaaacggctg
tacagggctgttgtggaaacggtgcataagttggatattataatcggcggcaagtcatca
tatagggaggtcttcaaacctgagaatatcagtttgaggaacaaattgcgggaactttgt
gtaaagctgatgtttctgcaccctgtggactatggacgcaaggcagaagagctgctgtgg
aggaaggtctactatgaggtcattcaggtcatcaagaccaacaagaagcatattcacagc
cgcagtgctctggagtgtgcctacaggacccatctgatcgctggggtgggcttctttcaa
cacctgctgctctacatccagtcacactatcagctggagctacaggactgcatcgactgg
acacacgtcaccgacccactcatcggtcgtaagaaaccagtctcagccacccctaaagag
atggagtgggcccagatggcgtgtcacagatgccttgtgtacttgggagatcttgcgcgg
taccaaaacgaactggcgggagtggaggcagagcagctggcggagcgcttctatcaccag
gccctgtctgtcgcacctcacgtcggcatgccatttaatcagctgggtacacttgctgga
agtaaattttataatgtggaggctacttactactacttgcgctgtattcagtcagagact
ccctttgatggcgcttatgggaatttaaagcgtctgtttgacaaggcagccaagatgtac
caccaggtgaagaaacaagagatgaagaaactgtcaccatcacgccagaggtcaaaagac
atcaaaagacttctggtgagcttcatgtatttgcagagtctgctgcagcccaagaacagt
ctgatggagacggagctgacatcactgtgccagtctgtgctggaagactttaacctggtg
ctgttctacctcccccttcctgctcacggcagccagttagccagtgaggaggaggaagag
cacgactccgtctgttctgtgcttcctgacagcctcatattcaagatggtggtgacttgc
cttatggtggtgcacagtttgaagagaggggcttcaaagcagtacagtgcctccatcgct
ttcacgttggctctgttctcccatttggtcaatcatgtcaacattcgactgcaagctgaa
ctggaggagggcgagagtgacgtcccacccctgcgcactgataacactggtacagacgac
gctgatgccagagatcatggtagtgctgctctatcagaggagagaaaactgcagaacggc
tccctagaggaagatgatgaagaggaggacgaagaggggaaaaatgaggaagatgagcct
aaggggaacggaaggacaccggggacaaagaaaagcctggagaagaaaagatcagctgag
gaaaagcaaaaacagaagcggaagttctcacggctctcgatgcttcgccgcagacgctgc
gctcacaaggaggacgagagcgacctgagcgagggatttgagagtgacgaagaagagagt
ggggaaggcaggggtccagtcgacggtctggaatctgctagggtccagataaactcttta
ggaagagaagggcggaggggaccactgccagaggatggcagctgggaaagcagttcggag
gaggatgagggcggcacagcttttgacgtcgacacggactccgacatgaacagtcaggaa
tctcgttcggaccttgaagacatggaggatgccgagaatgcaccacaacaacagcagcaa
caagaggaagatgagcaaccgcaaccgtctagggaggaaaactctacacctccagtaacc
aatggcccgtcagtgtctaatgacaccagcatcagcagtaacctgcaggccatgtcctct
cagctcttccaagccaaacgctgctttcgactcgcccccacctttagcaatgtactgctc
cggcctgcagctcccactaaccccatcccagactccaaccctgctccagtccaagaagcc
ccgcctcctactggagaaataccaagaagcatgagtccagaaattgctaatggaaccaat
gacaatgatcctgactctgaatctgagggcagtgagcacagcaaccattcgcttcacagt
gagaaaactctttctgagcgactggagattctgacaaatcagggtctcatccaggtggtg
aaggtattcttggattggctgaggacaaacactgatatcatcctcatgtgcgctcagagt
tctcagagcttgtggaacagactctcagtgctgcttaatttgcttcctgtaggcagcaag
atgttagaaactgatttaggtctggataagcatgtaacagacctgctgaatgagtgtgag
cagcctggtttggtccagacactactcttgccagaggatctggccctccgccacctccct
gccctcagcgtagcccatcgacgcctggacttcacaggccagagaccccctcttacccct
ctggatgagtgtgtggtgcgtgtgtgctgcattcgcagctttggtcacttcctcacaaat
ctccaatgcaacgtgttacacttcaacccggaggcgggcatcttcaccagcatcagccaa
tcagagcaggacaacctggttcagcaggccaaggcccagttccgcatggcggaggaggaa
gctcgcagaaaccggctcatgagagatatggcccagctgcgcctacagttggaggtctct
cagctggagggcagtctgcagcagcccaaagcccagtcctccatgtctccgtatctggtg
ccagacaccacggttctctgccagcacctggggctgctcagacagctggctgccagcggc
tgcttcatcatcatcatccctcgcacagtgattgatggtctggatctgctgaagaaagag
aactctggagcgagagatggaatccggttccttgagacagagtttcggaaggggaacagg
tacatccgctgccagaaagagtcaggaagaagctttgagagagacaagttaaaacgacag
gacattgaagcctggcacctgtataagatggtggacagctgtcgccagctgacgggatct
cagagcagtggagatgaagacaccgctggtatggtgaccatcctgacgggacactcacta
gaggagctgactgaaagatcagcttccatgaaggcagctgtccaggcggtggcagcagca
ggcatggagctgaagagcatcactgacttctgcaggcagtggaaagagatgggctga
DBGET
integrated database retrieval system
