Carassius auratus (goldfish): 113059413
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Entry
113059413 CDS
T07313
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03015
mRNA surveillance pathway
caua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113059413
09123 Folding, sorting and degradation
03018 RNA degradation
113059413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113059413
03041 Spliceosome [BR:
caua03041
]
113059413
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113059413
mRNA cycle factors
Stress granule specific factors
113059413
Spliceosome [BR:
caua03041
]
Complex C
Other components
Complex C specific factors
113059413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_Nup35
RRM_5
RRM_3
RRM_occluded
YflT
POP1_C
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
113059413
NCBI-ProteinID:
XP_026083671
Ensembl:
ENSCARG00000058542
UniProt:
A0A6P6LJP2
LinkDB
All DBs
Position
41:25785160..25793812
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AA seq
632 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHSDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AEMGARAKEFTNVYIKNFGEDMDDEKLREVFSKFGPALSIRVMTDDGGKSRGFGFVSFER
HEDAQKAVDEMNGKELNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSRGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTSQYMQRMASVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA
AYYPTSQLAQLRPSPRWATQGVRPQHFQGMPNAVRPSGPRPQAFGAVRPASQVPRVIAPQ
RMASQAMGPRPSAAGAPTGTSQVRGVPQYKYTPGVRNPAQHMPSQPQVPMQQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKEAAQKTPSSAVPAV
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcgcccagttacccgatggcctctctgtatgtgggggatctgcactca
gatgtgacggaggccatgctgtacgagaagttcagtccagctggacccatcctctccatc
cgggtctgcagggacatgatgacgcgccgctcgctcggttacgcctatgtcaacttccag
cagcccgccgacgccgagcgcgccctggacacgatgaacttcgacgtgatcaagggccgt
ccgctgcgcatcatgtggtcccagcgagacccgtccctgcgcaagagcggcgtgggaaac
atcttcatcaagaacctggacaagtccatcgacaacaaggccctgtacgacacgttctct
gccttcggaaacatcctgtcctgcaaggtggtttgtgatgagaacggctctaaaggatac
ggctttgtgcactttgagacccacgaggctgcagaaagagccattgagaaaatgaacggc
atgttgctcaatgaccgcaaagtgttcgtgggacgcttcaagtctcgtaaggagcgcgag
gcagagatgggcgcccgtgcgaaagagttcaccaacgtttacatcaagaacttcggagaa
gatatggatgacgagaagctgagggaggttttcagcaagtttggtccagcgctcagtatt
cgagtcatgacggatgacggcggtaaatctagaggctttggcttcgtcagcttcgagagg
cacgaggacgcccagaaggccgtggatgagatgaacgggaaagagctgaacgggaagcag
gtgtacgtggggcgcgctcagaagaagggagagcgtcagacggagctcaagcgcaagttt
gagcagatgaagcaggaccgcatgacgcgctaccagggagtcaatctctacgtgaaaaat
ctggacgatggactcgatgatgagcgtctgaggaaagagttctccccgtttggcaccatc
accagcgcaaaggtgatgatggaaggcggccgcagcaggggcttcggcttcgtctgcttc
tcgtctcctgaagaagccactaaagcggtgacggagatgaacggtcgtatcgtggccacc
aagccgctgtatgtggctctggctcagaggaaggaggagcgtcaggctcatctcaccagt
cagtacatgcagaggatggccagcgtcagagccgtgcccaaccccgtcctcaacccctac
cagccagcgccaccttcaggatacttcatggctgcgatcccacaggctcagaaccgtgca
gcttactatcccaccagtcagctcgctcagctccgccccagtcctcgctgggccactcag
ggggtccgccctcagcatttccagggcatgccgaacgccgtcagaccctcggggccccgt
cctcaagccttcggggccgtgcgtcccgcctcacaggtcccgcgggtgatcgcgccccag
cgcatggcgtctcaggccatgggccctcgccccagcgccgcaggggcccccacagggacg
tctcaggtgagaggagtgccacagtacaagtacacacctggagtccgcaacccagcgcag
cacatgccctctcagccgcaggtgcccatgcagcagcctgcggtccacgttcagggtcag
gagcctctgaccgcgtccatgctggctgccgcccctccacaagaacagaagcagatgctc
ggtgagcgtctgttcccgctcatccagaacatgcatcccagtcttgctgggaagatcacc
ggaatgctgctggagatcgacaactctgagctgctgcacatgctggagtctccggagtct
ctgaggtcaaaggtggatgaagcggtggcggtgctgcaggctcatcaggctaaagaagct
gcgcagaagacccccagcagcgctgtgccggccgtctaa
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