Carassius auratus (goldfish): 113059905
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Entry
113059905 CDS
T07313
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
caua
Carassius auratus (goldfish)
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
caua00535
]
113059905
Proteoglycans [BR:
caua00535
]
Extracellular matrix (ECM) proteoglycans
Others
113059905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
FN3_Tor_3rd
Fn3_Dep-1_2nd
VWA_3
Motif
Other DBs
NCBI-GeneID:
113059905
NCBI-ProteinID:
XP_026084356
Ensembl:
ENSCARG00000039769
UniProt:
A0A6P6LLK4
LinkDB
All DBs
Position
41:complement(5670482..5771191)
Genome browser
AA seq
1861 aa
AA seq
DB search
MRVSGSRIKLWCPLISLALIQFLTPVSAQVPAPRRLRFKVLSAGRLLVSWKEPKGEYDGY
KFIYNTEPGGETRELQIARGENKAIIKDFNPRKEYSVKIIAVTGNLHSRALQGKYTAEDQ
SSDGDTPQPQRLKDPGPVEEGNEISGADQFVCTTSAIADIVILVDGSWSIGRINFRLVRL
FLENLVSAFDVGIDKTRIGLAQYSGDPRIEWHLNGFSTKDAVIDAVKNLPYKGGNTLTGL
ALNYILENSFKPESGARSDVPKIGILITDGKSQDDVIPPAQSLRSAGVELFAIGVKNADE
NELKAIASEPEETHVYNVADFSIMSTIVDGLTSKVCDGVEQQDKEIIPDSSTEETAFPPQ
DLVTSEVTAHSFRVSWTHAPGSVEKYRVVYHPTGADILEEIVVGGTKNSVVLQNLNSLTE
YEIAVFAVYRSAASDALRGSEITLALPTVSDLKVYDVTDNSMRARWRDAEGASGYMILYA
PLSSETTDERELKVDESVTDVELTGLIPDSEYTVTVYAMFGEEASDPATVQETTMSLRPP
RNLRVTEVDHSSVRLNWDAASEEVKGYRVMYMKTDGVQTSEVDLGPVINVYLKNLSPFTE
YTVAVFALYDASQSEALSGGFTTMLVPAPFSLMTSEVTSESFRVSWSRPARDVVLYKMTW
TPTEAGEERAMMLNGAVDSYVIQDLSPFTEYKVSLSAIYKDETESSAVVVLENTLGQTTE
VPTTFLSTTAFVHLGVINLWVDEETPFSMQVNWEVLDSDVDQYKVTYVSADRTEETVLVS
GNRRSVILQPLLSDTRYKITVTPFYADGESTALAMASTGKTLPLSGPSNLRVSDEWYNRF
RISWDSPQFPTVGYRVIYQPISVPGPALETFVGDDVNTLLILNLLSDTEYSVQVIASYTT
GSSQPLTSKGKTLFLGVNGLSTYQVLSSSMCAQWQPHHHATVYRVVIESLLNGQKQEVRV
GGGASRECFFNLSPDTQYKISVYSLLQDTEGPAVITMASTAPAPTQPPTAPPTTIPPPTI
PPAKEVCKAAKADLAFLVDGSWSIGDDNFQKIIRFLYSTTGALDVIGPEGTQVAIVQFSD
DARTEFKLSSYGDKEALLDAVQRITYKGGNTKTGRAIKHVKDAIFAEDAGARRGIPKVLV
VLTDGRSQDDVNKISKEMQMEGYIIFAIGFADADYGELVNIASKPSERHVFFVDDLDAFK
KIEEQLITFVCEAATATCPSMLMSGNTLAGFRMMEMFGLVEKHYSSVQGVSMEPGTFNSY
PCYQLHKDALVSQPTRYLHPEGLPSDYTISMLFRILPETPQEPFALWEILDKNNEPLVGI
ILDNGGKTLTFFNSDYKGKFQTVTFDGSEIKKIFYGSFHKLHVAISKTAAKVVIDCKTVG
EKSINAAGNITIDGVEVLGRMVRSRGRRANSAPFQLQMFDIVCSTSWASRDKCCELPGLR
VEEDCPAMPHACTCAQDSKGPPGPSGPPGGPGIRGSRGDRGEPGLTGAQGPPGEIGPPGP
QGPPGPQGPNGLSIQGSPGAPGEKGEKGEIGLPGPQGVPGASGGPGRDGPPGQRGLPGND
GPQGRQGPPGPMGSPGAPGAPGPSGSPGQIGDQGPPGPSGTKGERGERGDMQSQAAVRAI
ARQVCEQLIQSHLSRYNSILNQIPSQSVSVRTVPGPPGESGRPGPPGPQGEQGSPGRPGF
PGASGQNGRPGERGLPGERGEKGSPGIGTQGPRGPPGPPGPPGEGRTGSQGSPGRPGIQG
TSGRPGIPGSPGPAGPPGYCDQNSCLRYNVGVQQLPSNPYQNYDPATNYNNDEEEEDPYG
GYRAYPPQYYQPSYPDPHAARFGPAHPGDTVGMRSAGTQRFSRSTAQEGSVDESEVQVKA
K
NT seq
5586 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtgtcgggatcgaggattaagctgtggtgtccgcttatctcgctggcactgatt
cagtttcttacccctgtttcggctcaagttccagctccgaggagacttcgatttaaagtt
ctgagtgcaggcaggctacttgtctcatggaaggaaccaaaaggagaatacgatggctac
aaatttatatataatactgaaccaggtggggaaacaagggagttacaaattgcaaggggt
gagaataaagcaataataaaggattttaatcccaggaaggagtattcagtcaagattata
gctgtgactggaaacctgcacagccgagcacttcagggaaagtatactgcagaagaccag
agcagtgatggagacacccctcagcctcaaagactgaaagacccaggacctgtggaagag
ggcaatgagatctcaggagcggatcagttcgtctgcacaacgtctgctattgcggatatt
gtcatcctggtcgatggatcttggagtattgggcgaatcaatttccgtctggttcgcctg
ttccttgaaaacctggtcagtgccttcgatgtgggaatagacaaaacccggattggactg
gcccagtacagcggggatccacgaattgagtggcacttgaatggcttcagcacaaaagat
gcagtaatagatgctgtcaaaaacctgccgtacaagggaggcaacactctcacaggtctt
gctcttaactacatcctggagaacagcttcaaacctgagtctggggctcgtagcgatgtt
cccaaaattggaattctgataactgacggcaaatcccaggatgacgttatcccacctgct
cagtccctgagaagtgctggagtcgagttatttgccattggtgtgaagaatgctgatgag
aacgagctgaaggccatcgcctctgaaccagaggaaacacacgtttataatgtggcggac
ttcagtatcatgagcactatagtggatggcttgaccagtaaggtgtgtgatggagtggag
caacaagacaaagaaattataccagattcttccactgaagagacagcattcccaccccaa
gacttggtcacttctgaggtgactgcacacagttttcgagtgtcttggactcacgcgcct
ggcagtgtggaaaaatatcgggttgtttaccacccaaccggagcagatattctggaagag
attgtggtgggcggcacgaagaactcagtcgtcctgcagaatttgaactctctgactgaa
tacgagattgctgtgttcgctgtgtaccgcagcgcagcaagtgacgctctgagaggcagc
gagatcacgctggctctgccaacagtgagtgatctcaaggtgtacgatgtgacagacaac
agcatgagagcccgctggagggatgcagaaggggcttctgggtacatgatcctttacgct
ccactgagcagtgagactacagatgaaagagagctaaaggtggatgagtcggtgactgat
gtggaactgactggattgattcctgactctgagtacaccgttacggtctatgccatgttt
ggagaggaggccagtgatcccgctactgtccaggagaccaccatgtccctgagacctcca
cgtaacctgcgggtcactgaagttgaccacagctctgtgcgactcaactgggacgcagcg
tccgaagaggttaagggctaccgtgtcatgtatatgaagacagatggtgtccagaccagt
gaggtggatttgggtccagtcatcaatgtgtacctgaagaacctgtcaccctttacagag
tacaccgttgcagtttttgctctctacgatgccagccaatcagaggcactcagtggtgga
ttcactacaatgcttgtgccggccccgttcagcctgatgacatcagaggtgacctcagag
agtttccgggtgagctggtcacgtcctgccagagatgtggtgctctataagatgacctgg
acccccaccgaagcaggagaagagagagcgatgatgctgaatggagctgtggactcatat
gtgattcaagacctgagtccttttacagagtataaggtgtcactgtcagccatctataaa
gatgaaacggagagcagcgctgtggttgtgcttgagaatacattgggccagaccacagaa
gttcccaccacttttctctccactacagcatttgttcatcttggagtgattaacctgtgg
gtggatgaggagacccccttcagtatgcaagtgaactgggaggtgctggactctgacgtc
gatcagtacaaagtgacatatgtcagtgcagaccgcacagaagagacagtgttagtctca
ggaaacagaagaagcgtgatcctgcaacctctcctctcagacacaaggtacaagatcaca
gtgacccctttttatgcagatggagagtccacagctctggccatggcctcaaccggcaaa
acactgccactttcaggacccagtaacctacgggtgtctgacgaatggtataatcgcttc
cgcatcagctgggacagccctcagttccctactgtgggatacagagtcatctaccagccc
atctctgtgccaggtccggctctagagacgtttgtaggggatgatgtgaacaccctgctg
atcctcaatctgttgagtgacacggagtacagcgttcaggtcatcgcctcctacaccacc
ggctccagccaacccctcaccagcaagggcaaaacattgttcctgggggtgaacggtctc
agcacataccaggtgctcagtagcagcatgtgtgcccagtggcaacctcaccaccacgcc
acggtctacagagtcgtcattgagtcactgcttaacggtcagaaacaggaagtgagggtc
ggtggtggtgcatctagagagtgcttcttcaacctttcccccgacacccagtacaagatc
agcgtctacagtcttttacaggacacagagggtccagccgtcatcacaatggcatccact
gctccagcacccacccagccaccgaccgcaccccccaccacgatccctcctcccaccatc
cccccagccaaagaagtttgcaaagcagccaaggcagacctggccttccttgtagatggc
tcctggagtatcggagatgacaactttcagaagattatccgtttcctatacagcacaact
ggtgcgcttgatgtgattggccccgagggaacacaggtggccattgttcagttcagtgat
gacgccaggactgagttcaagctcagctcctacggtgataaggaggctctgctggacgcc
gtgcagcgcatcacctacaagggaggaaacaccaagacaggtcgggccattaagcatgtg
aaggacgccatctttgctgaggacgcgggcgcgaggaggggcattcctaaagtgttggta
gtgctcacggacggacgatctcaggatgatgtcaacaagatctctaaagagatgcagatg
gagggctatatcatttttgccattggcttcgctgatgctgactatggagagctggtgaac
attgccagcaaacctagcgagagacatgtgttctttgtggatgatctggatgccttcaag
aaaattgaagaacagctcataacttttgtttgtgaggctgcgactgccacttgcccctcg
atgttaatgagcgggaacactttagctggttttcgtatgatggagatgtttggtttggtc
gagaagcactacagcagtgtgcaaggtgtctcaatggagcctgggactttcaacagctac
ccctgctaccagttgcacaaggacgccctcgtctcccagcctaccaggtatctgcatcca
gaaggccttccctctgactacactatatctatgctgttccgcatactgccggaaactcca
caggaaccttttgcattatgggaaatcctcgacaaaaacaacgagcccctggtgggcatt
atcctggataatggagggaaaacattaaccttcttcaattcggactacaagggaaaattt
caaacagtgactttcgacggaagtgaaattaagaagattttctatggcagtttccataag
cttcatgtggccatcagcaaaaccgctgctaaggtggtgatcgactgcaaaacggtggga
gagaaatccatcaatgctgcagggaacatcaccattgatggagtggaggttctgggacgc
atggtccgctcgcgtggaaggagagctaactcagcgccgtttcagctccagatgtttgac
atagtctgcagtacatcatgggccagtcgggataagtgctgtgagcttccaggcttgaga
gtagaagaggactgtcctgccatgccccatgcctgcacctgtgcccaggatagcaaagga
ccacctggaccctcaggacccccgggcggtcctggtatcagaggttcaagaggagatcgt
ggggagccaggcttgacgggggctcaagggccacctggtgagattggacctccaggacca
caggggccaccgggtcctcaggggccaaatggactgtccattcaagggtcaccgggggct
ccaggagagaaaggagagaagggtgaaattggtctgccaggtcctcagggtgtaccaggt
gccagtggaggaccaggccgagatggacctccaggacagagaggcctaccgggtaatgat
ggaccccagggacgacagggccctccaggaccaatgggaagccctggagcacctggggct
ccaggaccaagtggatccccagggcaaattggtgatcaggggccacctgggccttccggc
accaaaggtgaacgaggagagagaggtgacatgcagtctcaggccgccgtccgtgccata
gcgcgacaagtttgtgaacagctaatacagagtcacttgtctcgctacaactctattttg
aaccagattcccagtcagtctgtttcagtacgaacagtaccaggtccaccgggtgagtct
ggtcggccaggacctccggggccacagggagagcagggttcccctggcagaccaggattc
cctggagccagtgggcaaaatggccgcccaggagagagaggtctcccaggagaaagggga
gagaagggcagtccagggatagggacacaaggccctcgtggtcctccagggcccccaggg
cctcctggagaaggtcggacaggcagtcagggctctccagggagacctggaattcaaggg
acctcgggacgtccaggtatccctggtagccctggtcctgccggaccccccggctactgc
gatcagaactcctgcctcagatacaacgttggagtacaacagttaccctccaatccctac
caaaactatgatcctgccaccaactacaacaacgatgaggaggaagaggacccttacggt
ggctaccgtgcctaccctcctcagtactaccaacccagttaccctgacccccatgcggcc
aggtttggccccgcccaccctggtgacacggtggggatgaggtcagctggcacacaacgc
ttttcgcgcagcacggcccaagaggggagcgtcgacgagtcggaagtgcaagtgaaggct
aaatag
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integrated database retrieval system
