Carassius auratus (goldfish): 113061380
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Entry
113061380 CDS
T07313
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113061380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113061380
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113061380
mRNA degradation factors
5'-3' decay
Decapping complex
113061380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
Motif
Other DBs
NCBI-GeneID:
113061380
NCBI-ProteinID:
XP_026086256
Ensembl:
ENSCARG00000003751
UniProt:
A0A6P6LRZ0
LinkDB
All DBs
Position
1:9514612..9523909
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AA seq
764 aa
AA seq
DB search
MFHFQSFDDDCTLEEEEGLVEEEDEIDQFNDDTFGAGAIDDDWQEEHARLAELDELVRDE
VHGEGDPSSVDLPLSGSDAQSSAPLPPSSSSRLYPSIDERGGGDLAESLTHLILGSDPAI
AGVGAASSDRSLRPLMLSGQTPQPSGLAGQSSLLLNYQQQQRVLHRGPAPLSQINSHSIW
ENSMGFSPVSSGLLAQKEDKTLMSIIKEVGLPNRPPALSREEGRDLSERVPPPRSSSPVI
GSPPVRAVPIGTPPKQPMSHVHNQQNNHPSAIHVRASMPMRYPPPFPDRLSPNNLRSIAS
SQLTHPPFPGVGPVLSQIQRAQLLNSQFQRGPAPPLFQGGVGGFRPFFGQSGPRLGPHGP
PLGHAPIRHNTTHLHPQHRRMLNQRMQNRGMGDHVSGRGVGDRRNRDPYSNLMTQREKEW
VARIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERDRDTRKEHTTKLITPQVAKLEHTYRP
VQFAGSLGKLTVSSVNNPRKMIDAVVTTRTDDEEKREKQVWNKRRQILYTVEKMYSLLLE
VQDFEKKFLQTPEHQRDALLEQHKAHTVQLYNSLREKEWDDRVSDEQCLMIMSVRKGKRL
ISRLLPFLPQPQAAAVVMGIARNLPALAKKDKQDQVLCWLVKPVTAVIQCLSSTSLTDLL
QELQGREGQLPLVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSVTRELL
KVPSSALSSPLFTPPNLVSLFSRYVDRQRLELLQEKLQITALTR
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgttccattttcagtcttttgacgatgactgcaccctggaggaggaggaagggttggta
gaggaagaagatgaaattgaccagttcaatgatgacactttcggtgcgggtgcaatcgat
gatgattggcaggaggagcatgcccgcctcgcagagcttgatgagctggtacgagacgag
gtgcatggagaaggtgacccctcctctgttgatctccctctcagtggcagcgatgcccaa
tcatcggcccctcttccaccctcctcttcctcccggctctaccctagcatagatgaacgg
ggtggtggtgaccttgcggagtcactgactcacctcatcttgggctcggatcctgctatt
gctggagtgggtgccgccagctcagacagatctctacgtcctctgatgctgtccggtcag
actcctcagccctcgggattagctggacagtcgtctctgctgctgaactaccaacaacag
cagcgtgtcctgcatagagggccggctcctctgtcacagataaattctcacagtatttgg
gagaacagtatgggcttcagtcctgttagttctggactactcgctcaaaaagaggacaaa
acacttatgtccattatcaaagaggttgggcttccgaatcgacctcccgcactgagcaga
gaagaagggcgagatttgtctgaaagggttccacctcctcgctccagctcacctgtgatt
ggaagtccacctgtaagagctgtacctattggaacacctccaaaacagcccatgagtcat
gtccacaatcagcagaataatcacccttcagccattcatgtgagagcctctatgccaatg
cgctatccacctcccttccctgatcgtctgtcccccaacaacctccggagcatcgctagc
tcacagttgacccatcctccattccctggtgttggtcctgttctgtctcagatacagaga
gcccaacttctcaactctcagttccaacgtggtccagctcccccattatttcagggaggt
gtcgggggtttcaggccgttctttgggcagtccggccctaggttgggtccccacggacca
cctctcggacacgcacccatccgacacaacaccacccacctccacccacagcaccgcagg
atgctcaaccagaggatgcagaacagaggcatgggtgatcatgtcagcgggagaggtgtt
ggagacaggagaaacagagatccttacagcaatctgatgacacaaagagagaaggaatgg
gtagcaagaatccaaatgatgcagctgcaaagcactgatccatatctggatgactactat
taccagaattattatgagaagatggagaagcgtcaggagcgggaccgagacaccaggaag
gagcacaccaccaaactcatcactcctcaggtggctaaactggagcacacctatcggcca
gtgcagtttgccggctcattaggaaaactcactgtctccagtgtgaacaatccaaggaaa
atgattgatgctgtggtgaccactcgcactgatgatgaggaaaaaagagaaaagcaagtg
tggaataaaagacggcaaatcctttacactgtggagaagatgtacagtctattattagaa
gtgcaagactttgagaagaagttcttgcagacccctgagcaccaaagagatgccctgcta
gaacagcataaagcccacacggtgcagctctacaactccctccgagaaaaagagtgggat
gaccgagtgagcgatgagcagtgcttgatgatcatgtctgtgcgaaaggggaaacgcctc
atctccagactcctccccttcctgccacagccccaggctgctgccgttgtcatgggaata
gccaggaaccttccagccctggccaagaaagacaaacaagaccaggtgctgtgttggctg
gtaaagccagtgacggcagtaatccagtgcttgtcgagtacctccctcaccgatctcctc
caggagctgcagggcagggaaggacagctaccccttgtgctgcaaaataagtttggagtg
acgttgctctatctgattctgagtgaaggagagaggatgcagagctccgatcccaactgt
cagctcatggatgataaccgttggactgaattggtgttctctgtgacgcgggagctcttg
aaggtcccgtcctctgcactctcgtcaccgctgttcactcccccaaacctagtgtcactg
ttctctcgatatgtggaccggcagagactcgagctcttgcaggagaagctacagatcaca
gccctgaccaggtag
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