Carassius auratus (goldfish): 113061589
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Entry
113061589 CDS
T07313
Name
(RefSeq) transcriptional repressor CTCF-like isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
caua
Carassius auratus (goldfish)
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
caua03000
]
113061589
03036 Chromosome and associated proteins [BR:
caua03036
]
113061589
Transcription factors [BR:
caua03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
113061589
Chromosome and associated proteins [BR:
caua03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
113061589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
zf-C2H2_7th_ZNF462
zf-C2H2_ZN142
Zf-C2H2_ZNF451_C
zf-met
Zf-C2H2_ZNF451
zf-C2H2_6
zf-C2HE
zf-C2H2_15
Motif
Other DBs
NCBI-GeneID:
113061589
NCBI-ProteinID:
XP_026086607
Ensembl:
ENSCARG00000044673
UniProt:
A0A6P6LS53
LinkDB
All DBs
Position
43:7177830..7187244
Genome browser
AA seq
849 aa
AA seq
DB search
MRNSSSRPPFCAEPTLQKRERIKTAGGEGRSFTPSRTKGRTNPGLSIEFNARVNHQTQVL
PMEGGPTEAVVEDAGDAFKAKECKTYQRRREDEEVGAELLQAAVLEQAQAEGEPVVEAVN
SSVEMMVMDSLDPALLQMKTEVMEAAVGAPLGVAGAAHEATVTTVDDTQIITLQVVNMEE
QQLGLGELQLVQVPVSAVPVTAATVEELQGTLVDATAMPKDGEPVICHTLPLPEGFQVVK
VGANGEVETVEQDELQAQDNQPPQQEEEDMVEAQNEDPNWSKDPDYTPPVKKAKKTKKSK
LRYNTEGDKDMDVSVYDFEEEQQEGLLSEVNAEKVVGNMKPPKPTKIKKKGVKKTFQCEL
CSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCTDCDMA
FVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRD
TYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKS
DLGVHLRKQHSYIEQGRKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHM
VMHKRTHTGEKPYACSQCEKTFRQKQLLDMHFRRYHDPSFVPTSFVCTKCGKTFTRRNTM
ARHAENCNGMDSGDGENGAPPKRGRGGRKRKMRSRKDDDDDDSDEHGEPDLDDIDEEEDD
DLFDDDIDQMDVEQAPPSIPIPAPAEPPVKRKRGRPPKNAAKASPTKSVTKTTTAAAAII
QVEDESTGAIENIIVKKEPEGMDAASAAQPVVEEVEAVEAGVETVQLDIPEAAPNGDLTP
EMILSMMDR
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaacagcagctcgaggccgccattttgtgcggagcctactctgcaaaagcgggag
aggattaaaaccgccggaggtgaaggacgcagttttactccgtctcgtaccaaaggaaga
acaaaccctgggctttctatcgaattcaacgcgagagtaaatcaccaaacgcaggtatta
cccatggaagggggaccgactgaggcagtggtggaagatgcaggggatgctttcaaggcc
aaggaatgtaagacgtaccaaaggcgacgagaagatgaggaagtgggtgctgaattgctg
caggctgctgtgttagagcaagcccaggctgaaggagagcctgtggtggaagctgtcaac
agcagcgtggagatgatggtgatggactccctggaccctgccctgctccagatgaaaaca
gaagtcatggaggctgctgtcggtgcacctcttggtgtggctggtgccgctcatgaagcc
acggtcaccactgtcgatgatactcagatcatcaccttacaggtggtgaacatggaagag
cagcagttgggcttgggagagctgcagctggtgcaggtgcccgtttcagctgtgcctgtc
actgccgctactgtggaagagctgcaggggacgctggtggatgccactgccatgcctaaa
gatggggagccggtcatctgtcacaccctgccattgcctgaaggcttccaggtggtcaaa
gtgggtgcaaatggagaagtggaaactgtggagcaagatgagctccaggcccaagataat
cagcctccacagcaggaggaggaggatatggttgaagcccaaaatgaagacccaaactgg
tccaaagatccagactacacaccccctgttaaaaaggccaagaagactaagaaaagcaag
ctgcgttataacaccgagggtgataaagacatggacgtgtctgtgtatgactttgaggag
gaacagcaggagggactgctctctgaagtcaatgctgagaaagttgtgggtaacatgaaa
ccgccaaaaccaaccaaaattaagaagaaaggtgttaaaaagacattccagtgtgagctg
tgcagttacacttgccctcgccgttccaatctggaccgccacatgaagagccacacggat
gagaggcctcacaagtgccatctttgtggacgagccttcaggactgtgacgttgctgagg
aaccacctcaacacccacacaggcaccagaccacataagtgcactgactgcgacatggcc
ttcgtcaccagtggagaactggtgcgacaccgacgctacaagcacactcatgagaaacca
ttcaagtgctccatgtgtgactatgccagtgtagaggttagcaagctaaagcgccacatt
cgctcccacactggagagcgtccgttccagtgcagtctctgcagttatgccagcagagat
acctataagctgaagagacacatgaggacccactcaggagagaagccctatgagtgctat
atctgtcatgcacgttttactcagagtggtaccatgaagatgcacatactgcagaaacac
acagaaaatgtggcaaagtttcactgcccccactgcgacaccgttattgcccgcaagagt
gatcttggtgtgcatctccgtaagcagcattcctacattgagcagggcaggaagtgccgt
tattgtgatgcagttttccatgagcgctacgcactcatccagcatcagaagtcccacaaa
aatgagaaacgcttcaagtgtgatcagtgtgattatgcatgccgtcaggagcgtcacatg
gtcatgcacaagcgcacccatactggggagaagccatatgcctgcagccagtgtgagaaa
actttcagacagaaacagctgctggacatgcactttcggcgctatcacgaccccagtttt
gtacccacatcctttgtatgcaccaagtgcggcaagaccttcactcgcaggaataccatg
gccagacatgcagagaactgcaatggtatggattctggtgatggagagaatggagctcct
cccaaaaggggccgtggaggcagaaagaggaaaatgcgatctagaaaggatgatgatgat
gatgatagtgatgagcatggagaacctgaccttgatgacattgatgaagaggaagatgat
gacctatttgatgatgacattgaccagatggatgtggaacaggctccacccagcattccc
atccctgcgccagccgaacctcctgtcaagaggaaacgtggcagacccccaaagaatgca
gccaaggcttctcctaccaagtctgtcaccaaaaccaccacagcagctgctgccattatc
caggtggaggatgaaagcacaggggccattgagaacatcatcgtgaagaaggagcctgag
ggcatggatgcagcttcagctgcccagccggtagtggaggaagtggaggctgtcgaggcc
ggtgtagaaacagtgcagctagacatccctgaagctgcgccgaatggtgatcttactcct
gaaatgatccttagcatgatggaccggtga
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