Carassius auratus (goldfish): 113061772
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Entry
113061772 CDS
T07313
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113061772 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113061772 (ddx6)
03036 Chromosome and associated proteins [BR:
caua03036
]
113061772 (ddx6)
Enzymes [BR:
caua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113061772 (ddx6)
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
113061772 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
113061772 (ddx6)
Chromosome and associated proteins [BR:
caua03036
]
Eukaryotic type
Gene silencing
piRNA pathway
113061772 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
AAA
SNF2-rel_dom
AAA_22
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
113061772
NCBI-ProteinID:
XP_026086989
Ensembl:
ENSCARG00000069595
UniProt:
A0A6P6LR76
LinkDB
All DBs
Position
43:14631620..14644364
Genome browser
AA seq
482 aa
AA seq
DB search
MSTARMENPVILGLSNQNGQMRGSVKPAGGPGGGGSQTTQPAQVKPSSTVNNGNSQPAPT
ANTIIKPGDDWKKNLKLPPKDLRMRTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSP
IQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDCIQALGIVPTRELALQVS
QICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVNQVQ
MIVLDEADKLLSQDFVQMMEEILSFLPKQRQILLYSATFPLSVQKFMNTHLQKPYEINLM
DELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSC
FYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHR
IGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPSSIDKSLYVAEYHSESGEEV
KL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagcccgaatggaaaatccagtgattctgggactgtcgaatcaaaatggccaa
atgcgaggctctgtgaagccggcaggtggtcctggtggaggggggtcccaaacaacacag
ccagcccaggtcaaaccctccagcaccgtcaacaacggcaactcccagcctgcacccaca
gccaacaccatcatcaagcctggggatgactggaagaaaaatctaaagcttcctcccaag
gatttgcgcatgagaacttcagatgtgacggcaaccaagggaaatgagtttgaggattat
tgcctgaagcgggagctgcttatgggcatctttgaaatgggctgggagaaaccgtcaccc
atacaggaggagagcattcccattgcgttgtctggcagagacattctggccagagccaag
aacggcacaggaaaaagtggcgcctacctcattcccttacttgaacgcatagacctgaag
aaagactgcatacaagcattgggtattgtgcccactagagaactggctctacaggtgagc
cagatatgtatccaggtcagcaaacacatgggcggggtcaaggtcatggcaacaacaggc
ggaaccaacctccgtgatgacatcatgagactcgatgaaacagtgcatgttgtcatcgcc
actccaggaagaattttagacctcatcaaaaagggagtggccaaagtcaatcaagtacag
atgatcgtgttggatgaggcagataagctcctgtcacaggactttgtacagatgatggag
gagattttgagctttttgcccaaacaaaggcaaattttgctgtattctgctaccttccca
ctgagtgtgcagaagttcatgaacacccatctgcagaagccctatgagataaacctgatg
gatgagctgaccctgaagggggttactcagtattacgcctatgtaacagaaaggcagaaa
gtccattgccttaatactctcttctccaggctccagatcaatcagtctataatcttctgc
aattcatcacagcgagtggagctcctggcaaagaagatctctcagcttggatactcctgt
ttctacattcacgccaagatgagacaggaacacagaaaccgtgtgttccatgatttcaga
aatggcttatgtcgaaatcttgtctgcactgatctcttcacaagaggaattgatatacaa
gctgtgaatgtggtgatcaactttgattttcccaaacttggggagacgtacctccatcgc
attggtagatctggccgatttggacacttgggcctcgccattaacttgatcacttacgat
gatcgctttaacctgaaaggtattgaagaacagctgggtaccgaaattaaacccattccc
agcagcattgataagagtctatatgtggccgagtaccacagtgagagcggagaggaggtt
aaactgtga
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