KEGG   Carassius auratus (goldfish): 113062103
Entry
113062103         CDS       T07313                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
caua  Carassius auratus (goldfish)
Pathway
caua03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:caua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113062103
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:caua03041]
    113062103
Spliceosome [BR:caua03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    113062103
 Complex C
   U5 SnRNP specific factors
    113062103
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st EIF3I WDR55 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 Beta-prop_SCAP Beta-prop_IFT122_1st WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_SPT8 Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_Vps41 WD40_RFWD3 Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N eIF2A Beta-prop_HPS5 Cytochrom_D1 Beta-prop_Nup120_160 WD40_like Beta-prop_IFT140_2nd
Other DBs
NCBI-GeneID: 113062103
NCBI-ProteinID: XP_026087488
Ensembl: ENSCARG00000065518
UniProt: A0A6P6LSM4
LinkDB
Position
44:2122930..2128312
AA seq 347 aa
MIEPKKRGAEMAVVPAGVKRPRTELVAAAQSQQLSAMGPPRSSSLQAPIMLLSGHEGEVY
CCKFHPNGATLASSGYDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSLLFSASTD
KTVCVWDSETGERVKRLKGHTSFVNSCFPARRGPQLACTGSDDGTVKLWDIRKKASVHTF
QNTYQVLSVSFNDTSDQIISGGIDNDIKVWDLRQNKLIYSMQGHGDSVTGLSLSADGSYL
LSNSMDNSVRVWDIRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEVVFHPEEPIVLSGSSDKRLYIGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgatcgaaccgaagaagcgcggcgcagagatggcagtggttcccgccggagtgaagagg
ccccggacagagctggtggcagccgcgcagtcccagcagctctctgctatgggccccccg
cgcagctccagtctgcaggctcctataatgctgctctctggtcatgaaggtgaagtatac
tgctgcaaatttcaccctaatggagccacattagcctcctctggatatgaccgcctcatc
ttgctgtggaatgtatatggagactgtgataactacgcaacacttaaaggccacagtgga
gctgtgatggagcttcattataacactgatggcagtctgctcttttcagccagtacagac
aagacggtgtgtgtgtgggacagtgagacaggggagcgtgtgaagcgtctgaaaggacac
acgtcctttgtgaactcatgttttccggctcggcgtggaccacagctggcctgtacgggc
agtgatgatggaactgtaaagctgtgggacatcaggaagaaggcctctgttcacactttc
cagaacacatatcaggttctcagtgtatcatttaatgacactagtgaccagatcatctca
ggaggcatcgacaacgacataaaggtatgggacctcagacagaacaaactgatttacagt
atgcagggtcatggagactctgtgaccggtctgagtctcagtgcagacggatcctacctt
ctgtctaactcaatggataacagcgtgcgtgtctgggatatccgtccatttgcaccaaag
gagaggtgtgtgaagatctttcagggaaatgtccataactttgagaagaatcttctccga
tgctcttggtctcctgatgggagtaagattgcagctggttctgctgacaggtttgtgtat
atttgggacacaacatcccgtaggatcctttataagctccctggtcatgctgggtcggtg
aatgaggttgttttccatccagaagaaccaattgttctctctggatccagtgataagcgt
ctttacatcggagagattcaataa

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