Carassius auratus (goldfish): 113062142
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Entry
113062142 CDS
T07313
Name
(RefSeq) collagen alpha-1(XXII) chain-like
KO
K16630
collagen type XXII alpha
Organism
caua
Carassius auratus (goldfish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Motif
Other DBs
NCBI-GeneID:
113062142
NCBI-ProteinID:
XP_026087548
UniProt:
A0A6P6LST6
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Position
44:complement(3148626..3202333)
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AA seq
1619 aa
AA seq
DB search
MKFRSGVRISLVLTILALTLYGGGVEGQRAGCKNVHYDLVFILDTSSSVGKENFEKIRQW
VANLVESFDVGAEKTRVAVVRYSDRPTTEFNLGRYKTLEEVKRAAGNIRYLGGNTKTGDA
ISFTTKTIFTERAGARPVSKGIQKVAILLTDGRSQDFVLEPSIAAAAAGIRLFAVGIGEA
LREELEEIAAEPKSAHVFHVTDFEAIDKIRGRLRRRLCENVLCPNMKVQAGRFRPNSTSA
GLTEVPGFDLMEYFNVRDFLGEKFEPGQTPYVRLGTMPIVQQTEDVLPQGLPDEYAFVTT
FKFRKTSRKEDWYLWQVYDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRAVFKNPEVED
LFDRNWHKIGMRVDSKSVSLFLDCKHIETLPIEEREDIDIQGKTVIGKRLYDSVPIDFDL
QRMVIYCDGKQSEQETCCDIPGGPCEQSLVTEAPPLPLPTPKPTSAEQKKPADVNCSCPA
GERGETGLPGAVGPKGEKGDPGLKGAEGPPGYKGQKGERGQAFSIKGDRGEKGDSGERGE
PGARGERGSDGLPGLGGKHGDKGERGEKGVAGEAGFPGPLGPKGIQGDAGPPGAPGAQGV
SGVTGVKGDKGASGERGEPGLDGFPGKPGFPGKDGPRGLIGAPGSSGVKGEKGERGPAGL
PGDAVQLAGLKGATGIPGERGPPGADGPPGPPGPPGPAGLPGVPGENGQRGKKGDAGLPG
VDGLPGPPGPQGPSGPPGSPGQTGPPGLPGEIGFSGKPGEAGKPGLPGKDGSDGFPGNDG
EKGQRGEPGQDGFPGKPGPKGDEGPPGPRGPPGERGEPGLPGEVGTIGPKGERGGQGERG
KDGFSGPKGEKGDKGEIGPRGPAGVPGNVANVIPEPGEPGKPGEKGEKGDQGKPGEMGQR
GLPGEQGFRGQAGPVGLKGDSGEKGEAGRNGDPGPPGLMGPQGPRGLPGNVGIPGSIGPP
GIAGQRGEKGDAGKDGSSGPPGPPGEPGLRGEIGLPGKGKEGPKGDSGAPGPTGPPGLKG
LPGPQGMQGMPGNRGPPGEGTTGPQGPPGPAGPPGPAGLRGPPGVSGPEGPAGHNGLPGR
HGEKGNPGEPGKAADISDLNLKDICSDCPPGPAGQPGMPGPPGEQGLTGPPGKNGQDGYA
GPPGPTGPAGPRGADGAKGVKGDRGPSGAPGDKGEKGPPGPPGYPGAAGAMGQPGNDGNH
GPIGPPGAPGEKGKEGLPGIQGPPGLPGLMGLMGKPGKDGRPGETGEPGKQGEPGPPGRD
GLRGMPGFKGHSGEPGPPGSKGEDGKQGVPGREGPSGKDGKTGPPGPEGMRGPRGETGQH
GEPGPAGKPGSQGNPGQPGHKGEAGSPGLPGFSGPKGPSGPPGPIGPEGKQGMSGKPGDR
GQKGEKGDNGIKGDKGPVGDPGIPGNPGLPGRKGHTGMMGMSGPPGEVGPAGPPGSPGHP
GLPGLRGETPSLEQMRRLIQEELAKQLDAKLAYLMAQMQPAHIKSSAGRPGPPGPSGKDG
PPGRQGPPGEPGIPGQNGAEGSRGPVGPKGERGARGEKGEDGVGQRGEPGPIGPMGPAGM
PGYGKDGLPGAAGAQGEPGNPGPHGQPGPPGPTGQCDPSQCAYYASLASRPHTKNVKGN
NT seq
4860 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttcgatctggggtcaggatctctttggtccttaccatactggctctgactctg
tacggaggcggcgttgaaggacaaagggcaggttgcaagaacgttcactatgatctggta
ttcatcttggacacctcttccagtgtgggcaaggaaaattttgagaagatcaggcaatgg
gtggcaaacctggtagaatcttttgatgtaggtgcagagaagacacgtgtggctgtggtt
cgctacagtgaccgtcccaccacagaattcaacctgggcaggtacaaaacccttgaggag
gtcaagcgtgctgctgggaacatccgttacctgggtgggaataccaaaactggagatgcc
atcagcttcaccaccaaaaccatctttacagagagggcaggggcgaggcctgtctctaag
ggcatacagaaagtggcaatcttgctaacggacggcaggagtcaggattttgttttagag
ccgtcgattgctgcagcggctgctggaatcaggttgttcgctgtagggattggagaagct
ctgagagaggagctggaggagattgcagcggaacccaaaagtgctcatgtgttccacgtg
acagactttgaagccattgacaagatcaggggcaggttgaggaggagactctgtgaaaat
gtcctgtgtccaaacatgaaagtccaggcaggccggttcaggccgaacagcacaagtgct
ggactgacggaggtcccaggatttgatttgatggagtacttcaatgtcagagattttctt
ggagaaaaatttgagccaggtcagacgccctatgtccgcctcggtaccatgcccatcgtc
caacaaacagaagatgtgttacctcagggtctgcctgatgaatacgcctttgtgaccaca
ttcaagttcaggaagacttctcgtaaagaagactggtacctgtggcaggtctatgacaaa
tacggcatcccacaggtctccatccgtttggacggggagaacaaagcagtggagtacaac
gctgtgggcctgacgaaggacgcggtccgagccgtctttaagaacccagaggtggaagat
ctgtttgaccgtaactggcataagatcggcatgagggtggactccaagtcagtgtccctg
tttctggactgcaagcacattgagacgctgcccatagaggaaagagaagacatcgacatc
cagggaaagactgtcatcggcaagagactctatgacagcgttcccattgattttgacctc
cagaggatggtgatctactgtgatggtaaacagtctgagcaagagacgtgttgcgatatt
cctggtggcccatgtgaacagtctctggtgactgaagcccctccactcccgctgcccacc
ccaaaaccaacaagtgctgagcagaagaaaccagccgatgtcaactgctcctgtcctgca
ggggaaaggggtgagacaggtctaccaggtgccgtggggcccaagggtgaaaagggggat
cctggtcttaaaggggcagaaggaccaccaggatacaaagggcagaaaggagaacgtggc
caggctttctctatcaaaggtgatagaggagagaagggggacagcggcgagcgcggtgaa
cctggagccagaggagaaagaggatcagacggtttacccggtctgggtgggaaacacgga
gataaaggagagagaggtgagaagggagttgcaggtgaagctgggtttcccggacctctc
ggaccaaagggtatccaaggcgatgctggtccacctggagcaccgggtgctcaaggggtg
tctggtgtcactggagttaaaggagataaaggagcttctggagaaaggggtgaaccaggt
ttagacgggttcccagggaaaccaggttttccaggaaaagacggtcctagggggctgatt
ggtgctcctggttcaagtggagtcaaaggagaaaagggtgaacgaggtcctgctggatta
cctggcgatgcggtccagctggcaggactaaagggggccactggtatccctggtgaacga
ggacccccgggagcggacggcccccctggacctcctggcccacctggacctgcaggtttg
cccggtgtgccgggtgagaatggacaaaggggtaaaaagggggatgcaggattgccagga
gttgatggtcttccaggaccacctggccctcaggggccttctgggcctcccgggagccct
gggcaaacaggacctccaggattacctggagaaatcggcttctcaggaaaaccaggagaa
gcaggaaaaccgggccttccaggaaaagatggatcagatggtttccctggaaacgacggc
gagaaggggcagagaggtgaacccggacaggacggcttccctggtaaaccaggacctaag
ggagatgaaggccctccaggaccacgaggacctcctggtgaacggggagagcctggtttg
cctggagaggtcggcacaataggacccaaaggagagagaggaggccaaggagagagagga
aaagatggattttctggcccgaaaggagagaaaggagataagggcgagattggccccagg
ggtccagccggggtcccaggcaatgtggccaatgtgattcctgaacctggtgaaccgggt
aagccgggagagaagggagagaaaggagatcaaggaaaaccaggcgagatgggtcaaaga
ggacttcctggagagcagggattcagaggacaagcaggaccggtgggccttaagggggat
tctggtgaaaaaggagaggcagggagaaacggagacccaggtccacctggattgatgggc
cctcaggggccccgggggcttccaggcaatgtgggtattccaggcagcattggtccacct
gggatcgctggacagagaggagagaagggagatgctggtaaagatggttcatctggaccc
cctggtccacccggtgagcctggtttaagaggagaaattggtttgccaggaaaaggcaaa
gagggtccaaagggtgattctggagctccaggtcctaccggacctcccggactgaagggt
ttgcctggtccacaaggaatgcaagggatgccaggaaacagaggaccaccgggagaggga
accactggaccccagggacctcccggacctgcagggccaccaggaccagcgggtttgaga
ggacctccaggagtgagcggaccagagggacccgcggggcacaatggtttaccaggaaga
catggagagaagggcaaccctggagaaccaggaaaagctgcagatatttctgatcttaac
cttaaggacatttgttcagattgcccccctggaccagcaggacagccaggtatgccagga
cctccaggtgaacaaggtcttactggaccacctgggaaaaatggacaggatggatatgcg
ggtcctccaggaccaacagggcctgcaggaccacgtggtgctgatggagccaagggggtc
aaaggtgacagaggtccatcaggagctcctggagataaaggtgaaaagggccccccagga
cctcctggttatccaggggcggcaggagctatgggtcaacctggtaatgatggaaaccat
ggacctattggaccacctggagctcctggagaaaagggaaaagaagggcttccgggaatc
cagggaccaccaggtctaccaggtctaatgggtctgatgggtaaacctggaaaggatgga
agaccaggagaaacaggagagccgggtaaacagggagagccaggaccaccaggaagagac
gggctcagaggaatgcctggtttcaaaggtcacagcggggaaccaggaccaccagggtca
aagggtgaagatggaaaacagggtgttcctggacgtgagggtccatcagggaaagacggt
aaaaccggaccaccggggccagagggcatgagaggaccacgaggagaaaccggtcagcat
ggagaaccaggaccagcaggcaagcctggatctcagggaaatcctggtcagccaggacac
aaaggtgaagcagggagtccaggattacccggcttctcaggtccaaaagggccttcgggt
ccacctggtccgattggcccagaaggcaaacaaggcatgtcaggaaaaccaggagacaga
ggacaaaagggagaaaagggtgataatggaataaaaggagacaaaggacctgtgggagat
ccgggcattccaggtaaccctgggcttcctggcaggaagggtcacacaggaatgatgggc
atgtcgggacccccaggggaagtgggtcccgctgggccgcctggttctccaggacaccca
ggccttccaggtctccgaggtgagacgccatcactggaacaaatgcggaggcttattcaa
gaggaactcgccaaacagttggatgctaagttagcttacctcatggctcaaatgcagcct
gcgcatatcaagagctcagctggccgccccggtccacctggtccatcaggtaaagatgga
cctcctggccgacagggtccacctggagagcctggaatacctggacaaaatggagcagaa
ggatccagaggtccagttggtcctaaaggtgaacgaggtgcaagaggtgaaaagggagag
gacggtgttggacagagaggagagcctggtccaattggtcccatgggtcctgcaggtatg
ccgggatatggaaaagacggccttcctggagccgcaggcgctcagggagagcctggtaat
cctggtcctcacggtcagcccggacctcctggaccgacagggcagtgtgacccctcacaa
tgtgcttactatgccagtctggcatcaagacctcataccaaaaacgtcaaggggaattaa
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