Carassius auratus (goldfish): 113062782
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Entry
113062782 CDS
T07313
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113062782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caua03021
]
113062782
03019 Messenger RNA biogenesis [BR:
caua03019
]
113062782
Transcription machinery [BR:
caua03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113062782
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
113062782
U7-dependent histone pre-mRNA processing factors
113062782
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
113062782
NCBI-ProteinID:
XP_026088538
Ensembl:
ENSCARG00000047449
UniProt:
A0A6P6LYV8
LinkDB
All DBs
Position
45:complement(380061..385037)
Genome browser
AA seq
690 aa
AA seq
DB search
MATKRKADVPVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCGQGQRVSGILVKKNFSYHILAPSDLSNYTDLAMSTVKQTQAIPFTGPFPLLLSQLRHL
TGDVEEIEISEKSTLRVFNSITVVHDQNVVLLEWFANPLNDMYADAVTTVVLEVQSNPKA
QKAVQPQEKKVDVSVFQSRLLKMFQDMFGEECVDFKDKNCLAVSVDGKTAFIDLETRTAE
YEEANSEDDSLREMVELAVQRLYEAMNPVM
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggctacaaaacgtaaagcggatgtcccagttcctgcagaagagagtgatcagctcctc
ataagaccgctaggagctggtcaagaggtgggcaggtcctgtatcatcctggagttcaag
ggtcgtaaaatcatgctggactgtggcatccaccctggattggagggcatggatgcattg
ccttacattgatttgatcgacccagctgagattgacctgctcctcatcagccattttcac
ttggaccattgcggcgccttgccatggtttttacagaagacgagtttcaaagggaggact
ttcatgacccatgccaccaaagccatttaccgctggttgctttcagactatgtgaaagtc
agcaacatctcagcggatgatatgctgtacactgagaccgatctagaagaaagcatggac
aagattgagaccatcaacttccatgaagtgaaggaggtggccggcatcaagttttggtgc
taccacgcaggtcatgttttgggagcagccatgttcatgatcgagattgcaggagtgaag
ctactgtacacaggagatttctcccgtcaagaagacagacatctcatggcagctgagatt
cccagcgtcaaaccagacattctgatcacagagtctacatatggcacgcacattcatgag
aagagagaggagagagaggctcgtttctgtaacacagtccatgacatagtgaaccgcgag
ggccgctgtctcatccccgtgtttgctttgggtcgagcccaggagctgctgctcatttta
gacgaatactggcagaatcaccctgaactccatgacattcccatctactatgcctcatcc
ctggcaaagaagtgcatggctgtgtaccagacctatgtgaacgccatgaacgacaagatc
cgcaaggccatcaacatcaacaacccgtttgtcttcaagcatatcagcaatctcaagagc
atggaccatttcgatgacattggccctagtgtggtgatggcatctccaggtatgatgcag
agcggtctttccagagagctttttgagagctggtgcaccgacaagaggaacggtgtcatc
atagcaggttattgtgtggaaggcacgctcgccaagcatatcatgtctgagccagaggag
atcaccaccatgtcaggacagaagcttccgctgaagatgtccgtggactatatctccttc
tctgctcatacggactaccagcagaccagcgagttcatccgagctctgaaacctcctcat
gtgatcctggtccatggagagcagaatgagatggctcgactgaaagcggctctgataaga
gagtatgaggacaatgatgaggttcacattgaggtgcataaccctcgtaacactgaggcc
gtcacgctgaacttcagaggagagaaactggctaaggtgatgggctctcttgcggataag
aagtgtgggcagggtcagcgggtgtcgggcatcctggtgaaaaagaacttcagttatcac
atcctcgccccctctgacctctccaattacactgatctggccatgagcacagtgaaacag
actcaagccattcccttcaccggcccttttcccttgcttttgagtcagctacggcacctg
acaggtgatgtggaggagattgagatctcggagaagagcacgctgagagtctttaacagc
atcacggtggttcatgatcaaaatgtggtcttgttggagtggtttgccaatcctctgaat
gacatgtacgctgacgctgtgaccacagtggtgctggaggtgcagtcaaaccctaaagct
cagaaagctgttcagccccaagaaaagaaggtggatgtgagtgttttccagagcagattg
ctgaaaatgttccaagacatgtttggagaagaatgtgtcgactttaaagacaagaactgt
ctcgctgtaagtgtcgatgggaaaactgccttcatcgacttggaaacccgaactgcagaa
tacgaggaggccaattctgaagatgattctctcagagaaatggtggagctcgctgtacaa
aggctgtatgaagccatgaaccctgtcatgtga
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