Carassius auratus (goldfish): 113062934
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Entry
113062934 CDS
T07313
Name
(RefSeq) CCR4-NOT transcription complex subunit 4-like isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113062934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
caua03000
]
113062934
03019 Messenger RNA biogenesis [BR:
caua03019
]
113062934
04121 Ubiquitin system [BR:
caua04121
]
113062934
Enzymes [BR:
caua01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113062934
Transcription factors [BR:
caua03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
113062934
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113062934
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113062934
Ubiquitin system [BR:
caua04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
113062934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-RING_2
zf-C3HC4_2
Torus
zf-C3HC4
zf-CCCH_2
DZR_2
Motif
Other DBs
NCBI-GeneID:
113062934
NCBI-ProteinID:
XP_026088819
Ensembl:
ENSCARG00000001594
UniProt:
A0A6P6LWF4
LinkDB
All DBs
Position
4:complement(22446041..22469560)
Genome browser
AA seq
795 aa
AA seq
DB search
MSRSPEVKEDPMECPLCLEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKITENRKHLSSVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKTNPNFLQSSTGEKTKGKSGTSQSSNSNNKDAWPSIQTTGKMPNGLPEHQETPSL
DGSSDSENMTSDGPDTELGLGSITGLPLFTSNCDSGSPNNKPSDCIGISNGETSQQISGN
DSPSPPPGLSKPSLVVPVCVAGLTVRSPFEGAAAESQSLFSDNSNFRHPNPIPSGLSGFS
SSLHSNSDWPTAPEPQSLFTSDTIPVSSSTDWQAAFGFGSSAKQQDDDLGFDPFDVTRKA
LADLIEKELSVQDKASLPMTGTKSVPVFPHGPLLSPLHSTPSMKGPLQPLTSSNFAPNSS
LPSRGFSQHPHRTVYNSFSFPGQTQTSRHSWMGMHMRNNLQHLNHTGAPSSAAQHSSFLD
LNLAPQQQHHHNTGFGGMHMTAENGTSVESLNVKEWQDGLRALLPNININFGGLPNSSSS
SSSSSSSSNHTGGLSHSLSWDGTPSLMDPAIITGIPATSGNNLDSLQDDNPPHWLKSLQA
LTEMDVPTGSTVPPQPPHSGPFGAQFPHRAGWTPYPTTANPATQFHSPPPGFQTAFRASA
PASTDLLQSAGMDRH
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgtagccctgaggtgaaggaggaccccatggagtgcccactgtgcttggaacca
ctggaaattgatgacgtcaacttcttcccttgcacctgcggctatcagatctgccgcttc
tgctggcatcgcatacgcacagatgagaacggcctctgcccagcctgcagaaagccctat
ccagaagaccctgcggtctacaaacctctctctcaagaggaacttcagaggataaagaat
gagaagaagcagaagcagaatgagcggaagcagaagatcacagagaaccgcaagcatctc
tccagtgtgcgagtcgtccagagaaacctggtgtttgtggtgggcctttcacaacggctc
gctgatcccgaggtcttaaaaaggccggagtacttcgggaaatttgggaagatccataag
gtggtcatcaataacagcacttcttatgctggctcgcagggtcctagcgccagtgcttac
gtcacttacattcgatcagaagatgccctcagagccatacagtgtgttaacaatgttgta
gtagatggacgaacacttaaggcttctctagggacaacaaaatactgcagttattttcta
aaaagcatgcagtgccccaaaccagactgtatgtatcttcacgagctgggagacgaagct
gctagtttcacaaaagaagaaatgcaggcagggaaacatcaggagtatgaacagaaactc
ttacaggacctctacaaaacaaatcccaacttcctgcagagctcgacgggggagaagaca
aagggcaaatcaggcacatcacagagttccaacagtaacaacaaagatgcttggccttcg
atacaaaccacaggaaagatgcccaatgggcttccagaacaccaagagaccccgtcccta
gatggcagctccgactctgaaaacatgacttcagacggtccggacacagagctcggcctt
ggctccatcactggcctgcctctcttcacatcaaactgtgactctggcagcccaaataac
aaaccttcagattgcatcggtataagtaacggagaaacatcacagcaaatttctggcaat
gactctccatcgccgcctccaggcctgtccaagccgtctctagtggtgcctgtctgtgta
gcagggctgacagtacggtcaccttttgagggagcagcagccgagtcacaatcgctcttt
tcagacaacagcaacttccgacaccccaatcccatccccagcggcctgtccggcttttcc
agttcccttcacagcaactccgattggcccactgccccagaaccacagagtctcttcacg
tcagataccataccagtgtcgtcctctacggactggcaagcggccttcggtttcggttct
tcggccaagcaacaggatgacgacctcggctttgacccgtttgacgtcacccgtaaggca
ctggctgaccttatagagaaagagctctcagtgcaagacaaagcctccttacccatgacc
ggcacaaaatcagtgccagtcttcccccacgggcctttactcagcccactccacagcacc
ccttcaatgaaaggcccacttcagcccctcacgtcctcaaacttcgccccaaactccagc
ttgccctcacggggcttctcccagcacccacaccgcacggtctacaactccttcagcttt
cccgggcagacgcagacctctcgccacagttggatgggcatgcacatgcgcaataacctc
cagcacttgaatcacactggagccccttcttctgctgcacagcacagcagctttttggac
ttgaacttggcaccacaacagcaacatcatcacaatacggggttcggaggtatgcatatg
acagcagaaaacggcacctcagtagaaagtctaaatgtgaaggaatggcaagatgggctc
agagcacttttacccaacatcaacatcaactttggtggactgcccaactcctcatcttca
tcttcatcctcctcctcctcatccaaccacacaggcggcctctcacacagccttagctgg
gacggcacacccagcttgatggaccctgccatcatcacaggtatcccagcaacctcaggc
aacaatctggactctctgcaagatgacaatcctccccactggctcaaatccttgcaggcg
ctcacagagatggatgtccctactggctccacagtgccccctcagcccccacacagtggc
cccttcggagcccagttcccccacagagccggctggaccccttatccaaccacggctaac
cccgccacccagttccactcacctcccccaggcttccagactgccttcagagcctcagcc
ccggcctccacagatctgctacagagtgccggaatggaccgacattag
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