Carassius auratus (goldfish): 113063317
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Entry
113063317 CDS
T07313
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113063317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113063317
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
113063317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
113063317
NCBI-ProteinID:
XP_026089403
Ensembl:
ENSCARG00000016514
UniProt:
A0A6P6LY69
LinkDB
All DBs
Position
45:12958535..12983579
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AA seq
518 aa
AA seq
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MSTREVTEKTADESADDETDWLYGDDNFEEEETTEKEVFSALIGDVDGVSGLNYQPFCFS
LTKESESDSDDDVCVTIGDIKTGGSQGSSFGSSSVSLNIKTSVSGSKSRGLDLDAEGSVL
KVDVESFEEKPWRKPGAELSDYFNYGFNEDTWKAYCDKQRRLRMSLEILSLGSLSKIMVH
RSSSNDLSEHSTRKSSGGINVIGGQAGTISRVEGRRRHSADENNIQVVSEQSSDTELSSP
KLLPFFPPNIPPPPFPPPSISTTLPLIPPPGFPLPPGAPPPMIPPLDRLVSYRNWRERQR
RCSRKTKQDHSRSLYRQKKEKKKDRERKGERKSSGRLGGYDRRSATPYPFPAGVYTPAVG
VASWSGVIDSSKAWENYTRHNKERVREKARERGHTKDQEQERERYRETDREHSPSSQEHR
SEEERVSRHRDHRHYGSERYRESSGREGVRDRHRERRHRDRNEQHRSSCSGSSRRRHDSD
DADSHRRHRHKRSRHSRGSLEPSEECNVDQENQSEATE
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgtccacaagagaggtgacagagaaaacagctgatgagagcgctgatgacgagacagac
tggctctatggagatgacaattttgaagaagaagagacaacagaaaaggaagttttcagt
gctctgattggtgatgttgatggagtgagtggactcaattaccagccattttgtttttcc
ctcacaaaggagagtgaatcagacagtgatgatgatgtctgtgtgaccatcggtgacatt
aaaacaggcggatctcagggctcgtcatttggttctagttctgttagtctgaacataaag
acctctgtatcaggctccaagtccagagggctggatctggatgctgaaggcagtgtcctg
aaggtggatgtggagtcctttgaggagaagccatggaggaagccaggtgcagagctgtct
gactactttaactatggttttaatgaggacacctggaaggcttactgtgacaaacagaga
cgactacgcatgagcctagagatcctgagcctggggtcattaagcaaaataatggttcat
cggagttctagtaatgatctgtcagaacactcaaccaggaagtcgagtggtgggatcaat
gttatcggagggcaagcagggaccatcagtcgcgtggaaggaagaagacgtcacagtgct
gatgaaaataacatccaggttgtgtcagagcaatcctcggacacagagctatcttcccca
aagctgttgcccttctttcctcccaatatcccacctccacctttccctcctccctccatc
agcaccacacttcccctcataccaccacctggtttcccattacctcccggggcccctcca
cctatgataccaccattagataggttggtgtcatatagaaactggagagagagacagagg
agatgtagcagaaagacgaagcaagaccatagcaggtcactatacaggcaaaagaaggag
aaaaagaaagacagagaaagaaagggagagagaaagagcagtggacgtttgggaggctat
gatcgacgctctgctacaccttaccccttccctgcaggtgtgtatacacctgcagtgggc
gtggcttcatggtcaggtgtgatagacagcagcaaggcatgggaaaactacacccgtcat
aacaaggaaagggttagagagaaagccagagaaagaggacacacaaaagaccaagagcag
gagagagagcggtatagagaaaccgatcgagaacacagcccctcctcccaagagcacaga
agtgaggaggagcgtgtgtctcgacacagggatcaccgtcattacggaagcgagaggtac
cgagaaagctcgggaagagaaggagtgagagacagacatcgagaaagaagacacagagac
aggaatgaacaacatagatcctcatgcagtggaagcagcaggaggcgtcatgatagtgat
gacgcagatagccacaggagacataggcacaaacgctctagacacagccgaggaagtctt
gagcccagcgaggagtgcaatgtggaccaggagaaccagtcagaggccacagaataa
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