Carassius auratus (goldfish): 113063359
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Entry
113063359 CDS
T07313
Name
(RefSeq) transcription factor SOX-5-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
caua
Carassius auratus (goldfish)
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
caua03000
]
113063359
Transcription factors [BR:
caua03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
113063359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
MATalpha_HMGbox
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
113063359
NCBI-ProteinID:
XP_026089466
Ensembl:
ENSCARG00000006139
UniProt:
A0A6P6M0Z4
LinkDB
All DBs
Position
4:23835481..23950631
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AA seq
760 aa
AA seq
DB search
MKTGEAEDRMSSKRPASPYGGTDGEVVMATSRQRLEDEEVDGHAVIHLPLSTYCSKVSPR
SPRLLDSPPTLHANMDQDGCKGLALSPYPQHNSSTSPSKQQQQQEEGSMRPGSEPSSASA
LGTPERRKGSLADVVDTLKQRKMEELIKNEPEEAPSIERLLSKDWKDKILAMGSGNFGEI
KGTPDSLAEKERQLMGMITQLSSLREQLLAAHEEQKKLAASQIEKQRQQMELAKQQQDQI
ARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAAAQQGFLLPPGFNY
KPGCSDPYPLQLIPTTMAAAAAATPGLGPLQLQQFYAAQLAAMQVSPGAKHSTVPQANLA
TGTHSPTSGQSEKNRSTPPPKPKDEGAQPLNLSSKPKASESKSPNSPASPQVPALKLGPG
SLKHSAPSSIGGPPSRLSSIDLLSSITSGGYLNDHEAVTKAFQEARQMKEQLKREQQVLD
AKVAAVNSLSLNNGRSEKDKAALESLSQQLKHSEESKFTHAMMDFGISGDSDGSPSVSDS
RIFREARGRGSSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMTNL
EKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQYF
TVGQQAQLPLSSAGVVYPGALSMAGMPSPQMPSEHSSMSSSPEPVPPSSQPSYLTHKGEV
PRVKEEELRMDDGNGEAYDDFDYEDDDGDYGSDSENHITQ
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagacaggtgaagctgaagacaggatgtcttccaagcgaccagcctctccatatggg
ggaacagatggagaggtagtcatggcgacgagcagacagcgattggaggatgaagaggtt
gacggacatgctgtcattcacttgcccctgagtacgtactgcagcaaagtgtccccgcga
tctccgcgactgctcgacagccccccaacactacacgcgaacatggatcaggatggctgt
aaaggcctggccctgagcccttacccccagcacaactcttctacctcacccagtaagcag
cagcagcagcaggaggaggggtccatgcggccggggagcgaacccagctccgcttcagct
ctgggcacaccagagagacgcaagggcagcctggccgacgtggtcgacacgctcaaacag
cgcaagatggaggaactcatcaagaacgagccagaggaggcccccagtattgagaggctg
ttgtctaaggactggaaggacaagatattggccatgggttctggcaactttggagagatc
aaaggcaccccggacagcctggcggagaaagagcgccagctgatggggatgatcacacag
ctcagcagtctcagagagcagctacttgccgcccatgaggagcagaagaaactggccgct
tcgcagatcgaaaaacagcgccagcaaatggagttagcgaaacagcaacaggaccagatt
gcacgacaacagcagcaacttctgcagcaacaacacaaaatcaacctcctgcagcaacag
atccagcaggtccagggtcagttgcctccactgatgattcccgtgttccctccagatcag
agaactctagcggccgctgcagcacaacaaggatttctacttcctccagggttcaattac
aaaccaggctgcagtgacccttaccctttacagctaatacctacaactatggcagcagct
gctgcggcgacgcctggcctcggccctcttcagctgcagcagttttatgcagctcagctg
gctgccatgcaggtgtctccgggggccaaacacagcacagtgcctcaggccaacctggca
accggaacacactcgcccaccagcggccagagcgagaaaaacagaagcaccccgccacca
aagcccaaggacgagggcgctcagcccttgaatctgtcgtccaagcctaaggcatccgag
agcaagtcacccaactcccccgcttccccacaggtccctgccctgaagctgggccccggg
tccctgaagcacagcgccccctccagcatcggaggaccgccgtccagactcagctccata
gacctgctgtcgtccatcacctccggcggctacctgaacgaccatgaggcagtgaccaaa
gctttccaggaggcccgacagatgaaggagcagctaaagagagaacagcaggttctcgac
gccaaagtagcggcagtcaacagcctgagcctcaacaatggtcgctcagagaaggataaa
gccgctcttgaaagcctgagccaacagttaaaacattctgaagagagcaagttcactcat
gcaatgatggacttcggcatcagtggcgattcagatggaagcccgagtgtgtcagactca
cggatcttcagggaggctcgaggacgtggcagcagcgaaccgcacatcaagcggcccatg
aacgcctttatggtctgggctaaagacgagaggaggaagatccttcaggctttccctgac
atgcataactcaaacatcagcaagatcctcggttctcgttggaaatccatgaccaacctg
gaaaagcagccatattatgaagaacaggcccgtcttagtaagcagcacctagagaaatac
ccagactacaaatacaaaccacggccaaaacgcacctgcctagtggacggaaagaaattg
cgcattggagaatataaggccatcatgcgcaaccgcagacaggaaatgcgccagtacttc
accgtagggcagcaagcccagttgcccttgtcctcagcgggcgttgtgtacccaggcgcg
ctctctatggcaggaatgccctctccacagatgccctctgagcactcgagcatgtctagt
agccccgaaccagtcccacccagcagccagccctcttacctcacacacaagggggaggtg
cctcgtgttaaagaggaggagctccgaatggacgacggcaacggcgaagcctacgatgac
ttcgactacgaagatgatgacggggactatggcagtgacagtgagaatcacatcactcag
taa
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