Carassius auratus (goldfish): 113063370
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Entry
113063370 CDS
T07313
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
caua
Carassius auratus (goldfish)
Pathway
caua04137
Mitophagy - animal
caua04140
Autophagy - animal
caua04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
113063370
04137 Mitophagy - animal
113063370
04148 Efferocytosis
113063370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
caua03000
]
113063370
Transcription factors [BR:
caua03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
113063370
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Cas_Csn2
Motif
Other DBs
NCBI-GeneID:
113063370
NCBI-ProteinID:
XP_026089483
Ensembl:
ENSCARG00000023893
UniProt:
A0A6P6LYF2
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All DBs
Position
45:14584006..14598587
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AA seq
781 aa
AA seq
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MEISVGITEAGKCCLVFRVSSERRKEKSRDAARSRRGKESEVFYELAHQLPLPHNVTSHL
DKASIMRLTISYLRMRKLLSSDEEEKENEEESQLNSFYLKALEGFLMVLSEDGDMVYLSE
NVTKSMGLTQFDLTGHSIFEFSHPCDHEELREMLVHKTGSKKTKEQNTERSFFLRMKCTL
TSRGRTVNIKSATWKVLHCAGHVRVQERSEDSGDSGFKEPPLTYLVLICEPIPHPSNIEV
PLDSKTFLSRHTLDMKFSYCDERITELMGYEPDDLLNRSVYEYYHALDSDHLTKTHHNLF
AKGQATTGQYRMLAKKGGFVWVETQATVIYNPKNSQPQCIVCVNFVLSGIVEGDVVLSLQ
QTVTEPEAEEKENKEIEDEASEVDILKLFKPENLKCPIKSSELYEKLKGKPEALTVLAPA
AGDTIISLDFNNSDSDMQLLKEVPLYNDVMLPSSSEKLPISLSPLTPLDSTPVLTKLETG
AEDFPFCSASDRGPDSTNSSSTSGLGSSRPNSPMEYCFQVDSDISSEFKLDLVEKLFAID
TEAKTPFSSQAMEDLDLEMLAPYIPMDDDFQLHIPSKLDPLPSGPHSVSAMSSLFQPLPS
PTSPASSSSSVVKQEPSSQAPSPLHLLQEVCSAPVSPFSGSRDVSPARSPTPQNSNQLNN
RELSPKMLAIQNAQRKRKLEEVTSLCEAVGLGALLQSVDSVVEPGKRAKVLEVKGSSMLG
GNKTILILPSDVASRLLCSSLESSHGLPQLTRYDCEVNAPVQDRHHLLQGEELLRALDQV
N
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggaaataagtgttgggattacagaggctggaaaatgttgcttggtttttcgggtgagc
tcggagcgcaggaaggagaagtccagggatgcagcgcgatctcgcaggggaaaggagtct
gaggtgttctatgaattagcacaccagctccctctgccacacaatgtcacctcccacctg
gacaaagcctccatcatgaggctgaccatcagctacctgcgcatgaggaagctgctgagc
tctgatgaagaagagaaggagaatgaggaggagagtcagctgaacagcttttatctgaag
gccttggagggtttcctcatggtcctgtctgaagatggagacatggtttatctctctgag
aatgtcaccaaaagcatgggcctcacacagtttgatctgactggtcacagcatctttgaa
ttttcacacccatgtgaccatgaggagctgcgagagatgctggtccataagaccggatcc
aaaaagaccaaggaacaaaatactgagcgcagcttcttcctgcgtatgaagtgcacgctc
actagcagagggcggactgtcaatatcaagtctgctacatggaaggttcttcactgcgct
ggtcacgtccgtgtgcaggagcgcagcgaggattcaggagactctggctttaaagagcct
cctctgacctaccttgtgctcatctgtgagcccattcctcatccctcgaacattgaggtg
cctctggacagcaagacctttcttagccgccacactctggacatgaagttctcgtactgt
gatgaaaggatcacagagctgatgggatatgagccagatgatctcctgaacagatctgtg
tacgaatactatcatgccctggattcagatcacctcaccaagacacatcacaacttgttc
gccaagggccaggccaccacaggccagtaccgcatgctggctaagaaaggtggttttgtg
tgggtggagactcaggccactgttatctacaaccccaagaattctcagccgcagtgcatt
gtgtgcgtcaacttcgttctcagtggcattgtggagggggatgttgtcctgtccttgcag
cagactgtgacagaacctgaggctgaggagaaagagaacaaggagatagaagatgaggcc
tctgaggtggacatactcaaactcttcaagccagaaaacctcaagtgtcccataaagagc
tctgaactttatgagaagctgaaagggaagcctgaagctcttactgtgttggcgcctgct
gcaggagacaccatcatctctctggacttcaacaactcagattctgacatgcagctgctg
aaggaggtgcccctctacaatgatgtcatgctgccctccagcagcgagaagctgcccatc
agtctgtctcctctgaccccccttgactccaccccagtcctgaccaaactagagaccgga
gcggaggacttccctttctgctctgcttctgatcgtggtccagactccacaaactcatct
tccacatctggactgggctcctcgaggcccaacagccccatggaatactgtttccaagta
gactcagacatcagttctgaattcaaactggacctggttgagaaactgtttgctattgat
accgaggcaaagaccccttttagctcccaggccatggaggatctcgacctagagatgctg
gctccatacatcccaatggatgatgacttccagctgcatatcccctctaaactggatccg
ctcccctctggccctcactctgtgtccgccatgagctccctgttccaacccttaccctcc
cctacatctccagcctcttcctccagcagcgtagtgaagcaggagccgtcatcccaggcc
ccttcacccctgcacctgctgcaggaggtgtgcagtgcccctgtgtcacccttcagcggc
agtcgcgatgtttcccctgctcggtctcccaccccacagaacagcaatcagctcaacaac
agagagctgtcaccaaagatgctagccatccagaatgctcaacgtaagaggaagttggag
gaagtgacatcactttgtgaggctgttggactgggtgctttgcttcagagtgtggacagt
gttgtcgaacctggaaagagggcaaaggttttagaggttaaaggatcgagtatgcttgga
ggaaataaaaccattctcatactgccctctgatgtggccagtcgcctgttgtgcagttct
ttagagagcagccatgggctgcctcagctaacacgttacgactgcgaagtcaacgctccc
gtgcaggaccgccatcatctcctgcagggagaggagctcctgcgtgctctggaccaagtc
aactga
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