Carassius auratus (goldfish): 113064394
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Entry
113064394 CDS
T07313
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(V) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
caua
Carassius auratus (goldfish)
Pathway
caua04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113064394
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
caua00536
]
113064394
Glycosaminoglycan binding proteins [BR:
caua00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113064394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
113064394
NCBI-ProteinID:
XP_026090976
UniProt:
A0A6P6M500
LinkDB
All DBs
Position
46:complement(16975310..17062431)
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AA seq
1929 aa
AA seq
DB search
MFPEDFSILATVKPKKGSQSFLLSVYNEQGIQQLGLEVGRSPVFLYEDHLGKPGPEDYPL
FRGVNLADGKWHRVAISVHKQSITLVFDCKKKVTRTLSRSPHPIIDTKGIVVFGTRILDE
EVFEGDIQQLMIVSDHRAAFDYCEHYSPDCEVPAPEQHQNQDPNTDDSKTEDDNYYYEYP
YYEDMESETTGTETETEDLTVSVPDSGRVVSSVITSGTGGSSSSASSSSSSSSSSSSSSS
STTTTGEDPYDGYDGYETEYETTYYDETTSQPDGSRTITITSTGTGAGGEVDIELGGEVD
IGLGDLDRRIITSSSSSGGGGSVRVHTTTTVIHNGTSGSGTGSSTRTITSSSSGSSSGSS
SSSSSSSSSSSGVSTGSSSSSTSVDGGYDDNLYGETFYGEGYGEGYGEGEYNVEGGGGST
STSVSGGGGSVSVGGGSVSVGGGSVSVGGGSVSVGGGSVSSSGSVGGGSSSAGASVGAGS
VATGDTDSIDIDDFKESITDYTDEDLEKIYDYDNLYPDGDKALPAETDEIYGQVDGLRGE
KGQKGEPAIIEPGMLVEGPPGPEGPTGLPGPPGSSGSPGSPGDSGERGPPGRPGLPGADG
LPGPPGTVLMLPFRMSSGGDSGHKGPAVSAQEAQMQAIMQQARLAMRGPTGPMGLTGRPG
PLGPPGVPGLKGESGESGPQGPRGPLGSHGPPGKPGRRGRPGSDGARGMPGQTGTKGDRG
FDGLAGLPGEKGHRGETGPQGPPGPPGEDGERGDDGEVGPRGLPGESGPRGLLGPKGPQG
PPGPPGVTGMDGHPGPKGNIGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPTGKPG
LSGVPGADGPPGHPGKEGPSGEKGNLGPPGPQGPIGYPGPRGVKGADGVRGLKGNKGEKG
EDGFPGFKGDMGIKGDRGELGAAGPRGEDGPEGPKGRSGLPGDAGQIGPTGEKGKLGVPG
LPGYPGRQGPKGSQGFQGFQGASGEKGTRGTAGKPGPRGQRGPTGPRGERGPRGPTGKAG
PKGNSGSDGPPGPPGERGPLGAAGPTGFPGPKGPPGPAGKDGLPGHPGQRGETGFQGKTG
PPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPAGPTGKDG
PPGLRGFPGERGLPGPVGSAGLKGNEGPPGPPGPAGSPGERGAAGPAGPTGLPGRPGPQG
PPGPAGEKGGPGEKGPQGPAGRDGIQGPVGLPGPAGPIGSPGEDGDKGELGEPGQKGSKG
DKGEQGPPGPVGSQGPPGQPGPAGADGEPGPRGQQGLFGQKGDEGARGFPGPPGPVGLQG
LPGPPGEKGETGDVGQMGPPGPPGPRGPSGPPGADGPQGPPGGIGNPGAVGEKGDAGEPG
EPGLQGDVGPSGPRGERGEKGEAGPAGSAGPPGPKGPPGDDGPKGSPGPSGFPGDPGPPG
EPGPHGLDGASGDKGDDGEPGQPGSPGPTGETGPTGPPGKRGPPGPAGPEGRQGEKGAKG
ESGLLGPPGKTGPVGPQGSPGKPGSEGLRGMPGPVGEQGLPGATGPDGPPGPMGPPGLPG
LKGETGIKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGTAGLKGDTGISGPAGPIGPIG
PPGLPGPPGPKGAKGSSGQTGPKGEAGQPGAPGPPGPPGDVIHPLPMHSSPKRAKRNIDA
SQMMDDAADANYKDYEDGMEEIFGSLNSLKLEIEQMKNPLGTQSNPARTCKDLQLCHPDF
PDGEYWIDPNQGCSRDSFKVYCNFTAGGESCIFPDKKSEGARLTSWVKETPGSWFSEYKR
GKLLSYADAEGNPIGVVQMTFLRLLSATARQNLTYNCYQSVVWHDQELDSYDKAVRFLGS
NDEEMSYDNNPYIRAAVDGCALKKGYEKTILEINTPKVEQVPFVDIMFNDFGGAAQKFGF
EVGPACFIG
NT seq
5790 nt
NT seq
+upstream
nt +downstream
nt
atgtttcctgaggacttctccatcttggcgacggtgaagccaaagaaaggcagtcagtcc
ttcctgctgtcggtgtataacgaacagggcatccagcagctcggtctggaggtgggacgc
tctcctgttttcctgtatgaggatcacctgggcaaacccggcccagaggactacccgctc
ttcagaggggtcaacttggcggacggaaagtggcaccgtgtggcgatcagcgttcacaaa
cagagcatcactctggtttttgactgtaagaaaaaggtgacacggacgctatccagaagc
cctcaccccatcatcgacaccaaaggcattgtggtcttcgggacacgtatcctggatgag
gaggtgtttgagggtgacatccagcagctgatgattgtatcggaccaccgtgctgcgttt
gactactgtgagcactacagccctgactgtgaggttcctgcacccgaacagcaccaaaac
caggacccaaacactgatgactctaaaacagaggatgataactactattacgaatatccg
tactatgaggacatggaatcagaaacgactggaactgaaactgaaactgaagacctaacg
gtgtctgttccagatagcggtcgtgtggtttcgtcagttatcactagtggaacaggaggc
tccagcagttctgcgagtagctcctcgtcatcctcctcttcatcctcttcatcatccagc
tctaccacgactactggcgaggatccgtatgatggctacgacggatacgagaccgaatac
gaaacaacatactatgacgagacgacctcacagcctgatggctcccggaccatcaccatc
actagcacaggcacaggtgccggcggagaagtggatattgaactgggcggtgaggtggat
attggactgggagacctggacaggaggatcattacatcatcatcatcatcaggaggagga
ggaagtgtaagagtacacacaaccaccacagtcattcacaatggaacttctggctccggc
actggctctagcaccagaactattactagctccagctccggctccagctccggctccagc
tccagctccagctccagctccagttccagttctggcgttagtactggctccagctccagc
tctacatcggtcgatggtggttatgatgataacctgtatggtgagactttctatggagag
ggatatggagaaggatacggagagggagagtataatgtggaaggaggcggcggcagcacc
agcacttcagtgtccggagggggcggatctgtttctgtagggggcggatctgtttctgta
ggaggcggatctgtttctgttgggggcggatctgtttctgtagggggcggatctgtttcg
tcgagtggctcagttgggggcggatccagcagcgctggggctagtgtgggggcggggtct
gttgccacaggagatacagactccatcgatatcgacgacttcaaggagtccatcacggat
tacacagatgaagacctggagaagatttatgattatgacaacctgtaccccgatggcgac
aaagcgctgcccgccgagaccgacgagatctacggacaggtggatggactgagaggagag
aaagggcaaaaaggagagcctgcgatcattgaacccggaatgctggttgaaggcccacct
ggtccagagggtcccactggtctccccggtcctccaggttcatcgggatccccaggtagc
cccggagattccggtgagaggggtcctcctggtcgccctggtctgcctggagctgatggt
cttccaggacctccagggactgtcctgatgttgcctttccgcatgagttcaggaggggac
agcggacacaaaggtcctgcagtttctgcccaagaggctcagatgcaagccatcatgcag
caggccaggctggcgatgaggggtcctaccggaccgatgggtttgacaggccgtcctggt
cctctggggcctcctggtgtgcctggactgaaaggagagtctggagaatcaggacctcag
ggtcctcgtggtccactgggatcccatggccctcctggaaagcctggtagaaggggtcga
cccggctcagatggagccagagggatgcccggacagacgggaacaaagggtgaccgagga
ttcgatgggctcgctggtttgcctggagaaaagggtcacaggggtgagacgggtcctcag
gggcctcctgggcctccaggagaggatggagaaagaggtgatgatggtgaggtcggaccc
agaggtctgcccggagaatcgggtcctcgtggtttgttgggccccaaaggtccccaaggg
cctccaggacctcccggtgtgactggtatggacggacatcctggacctaaaggaaacatt
ggtcctcagggtgagccaggacctccaggtcaacaaggcaaccccggagctcagggactt
ccaggtcctcagggagcgatcggacctccaggagagaagggtcccactggaaaaccaggc
ttatcaggagtgccaggagccgacggacctccgggccacccaggaaaagaaggaccatct
ggagagaaaggaaacttgggacctcctggtcctcaggggcccatcggatatcccggccct
cgaggtgtaaagggagctgacggagtccgtgggctgaaaggaaacaagggtgaaaaggga
gaagacggatttcccgggtttaagggagatatgggcatcaaaggcgacaggggagaactt
ggtgccgccggacccagaggtgaagacgggcctgaaggacccaaaggaagatctggttta
cctggagacgctggacagatcgggccgaccggagagaagggtaagcttggtgtacccggg
ttgcccggttatccaggaagacaaggccccaagggttctcaagggttccagggattccaa
ggagccagtggagagaaaggcacgagggggacagcagggaagccgggaccccgaggacag
agaggacctacgggaccccgtggtgaacgagggccgaggggacccactgggaaagcagga
ccaaagggcaactcaggaagcgacggccccccaggaccacccggtgaacggggtccgtta
ggtgcagcgggacctactggatttcctggccctaagggtccaccgggtcctgccggaaag
gacgggctgcccggacaccctggccagagaggagagactggtttccaaggaaaaaccgga
cctcccggacccccaggtgtagtcggacctcagggaccaacaggtgagacaggaccaatg
ggagagcggggccaccctggacccccaggaccacccggtgaacagggtctacccggagct
gctgggaaagagggagcaaagggagatccaggtcctgcaggacccacaggtaaagatgga
cctccaggactcagagggttcccaggcgagaggggcttaccaggacctgtgggatcagca
ggtttgaaagggaatgaaggacctccagggccacctggacccgctggctctcctggtgag
cgtggtgctgctggcccagctggacctactggcctcccgggtcgacccggacctcaagga
cccccgggccccgctggagagaaaggtggacctggcgagaaaggacctcaaggcccagcc
ggtagagatggtattcagggacctgtgggacttccaggcccggccggacccatcggatcc
ccgggagaggatggtgataagggtgagcttggagagccgggacagaagggaagcaaaggt
gacaagggcgagcagggtcctccaggtcccgtcggtagccaaggtcctccgggtcagccg
ggtccagctggtgctgatggagagccaggtcccagaggtcagcagggtctgtttggacag
aagggagatgagggcgcacgaggcttcccaggaccacccggacccgtcggccttcagggc
ttgcctggaccccccggtgagaagggagagaccggtgacgtcggtcagatgggtccacca
ggccctcctggccccagaggcccctccggacccccaggagccgatggaccacagggacct
ccaggaggaattggcaacccaggagccgtgggagaaaagggagacgccggtgaaccagga
gaaccaggtctgcaaggagacgtcggcccttcaggtccaaggggagagcgaggtgaaaag
ggagaagccggacccgctggttctgctggtccccccggaccaaaaggaccaccaggagac
gatggtcctaaaggaagtcctggtccaagtggtttccctggtgatcctggtcctcctgga
gagcctggtccacatggtttggatggtgcttctggagataagggtgatgacggagagcct
ggtcagcctggatcccctggacctactggtgaaactggccccactggtcctccaggaaag
agaggacctcctggacctgctggacctgaaggaaggcagggggagaagggtgctaagggg
gaatctggtctcctgggtccacctggtaagacaggtccagttggtcctcagggaagccct
ggaaaacctgggtctgagggtctgagagggatgcctggaccagtgggagaacaaggactg
cccggtgccactggacccgatggacctcctggaccgatgggtcctcctggactgcctgga
ctgaagggagaaactgggattaaaggtgaaaagggtcatcccggtctcattggactcatc
ggacctccaggagaacagggagagaagggagacagagggctgccgggtccacagggaact
gcaggacttaaaggagacactggtatttcaggacccgctggacctatcggacccattgga
cctcctggtctcccgggtcctcctggtcctaaaggtgctaaaggatcatctggtcagact
gggccaaagggagaagctggacagccgggagctcctggacctccaggtccacctggtgat
gtcatccaccctctgcctatgcattccagccccaaacgggcaaagaggaacattgatgcc
agccagatgatggatgacgctgcagatgccaactacaaagactatgaggacggcatggag
gagatcttcggctctctgaactctctcaaactggagattgaacagatgaaaaacccactg
ggcacacagagtaaccccgcgcgcacctgcaaagacctgcagctgtgccacccagatttc
ccagatggtgaatactggattgatccgaaccagggctgctccagagactctttcaaagtg
tactgtaacttcacagcaggtggagagagctgcatcttccctgataaaaagagcgaaggg
gccagactcacctcttgggtgaaggagactccagggtcgtggttcagtgaatacaaacgt
ggtaaactgctctcatacgcggatgcagagggcaatccgatcggagtggtccagatgacc
ttcctgcgtttactcagcgccacggctcggcagaacctgacttacaactgttaccagtcg
gtggtttggcacgaccaggaactggactcttacgataaagccgtccgcttccttggctcc
aatgatgaggagatgtcttacgataacaacccgtacatcagagcggccgtcgacggatgc
gcgttgaaaaagggctatgaaaagactattcttgagatcaacacaccaaaagtggagcag
gtaccatttgttgacatcatgttcaacgatttcggcggagcggcgcagaagttcggcttt
gaggtcggaccggcctgcttcatcggctaa
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integrated database retrieval system
