Carassius auratus (goldfish): 113065057
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Entry
113065057 CDS
T07313
Name
(RefSeq) structure-specific endonuclease subunit SLX4-like
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
113065057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
caua04121
]
113065057
03400 DNA repair and recombination proteins [BR:
caua03400
]
113065057
Ubiquitin system [BR:
caua04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
113065057
DNA repair and recombination proteins [BR:
caua03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
113065057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
zf-met
zf-C2H2
zf-C2H2_6
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
113065057
NCBI-ProteinID:
XP_026091963
UniProt:
A0A6P6M5W6
LinkDB
All DBs
Position
47:complement(10065898..10075177)
Genome browser
AA seq
1740 aa
AA seq
DB search
MNDSDQDFTDLCSRLLKRVRKRGAGASGDEKRSAVKGEEPSSSSSQRNPPKRRKRTKDAA
QTETKSQISGRTRAEESGDVSQRAPEGSGDVSQRAPEGSGTGSVTEAVIRRMQRFKRASP
ERLLHAETNQPSSTESDGNHPSTVRIQHTETVGDDEALALRLQQELDCEARAAGDVEDEA
LFFCQLCQKDLSAMSPPLRTQHINRCLDASESSAPSASHHSHPRPRVPECPICGKSFKSE
KSRSVHLKRCSTNLGVKPNDLLQALRRQAAERASDNTTDQSKLIGSATTTQRDGMPLKKR
SRRKAQKLDEDTMVALALSRSILEQEMEKERELEEEREILAQLSSPPGTGAPVLQWKPGA
GKGRGKRRKGASPVHPPLLLIQDPQTALNRLQERVSSLLLRSRPPSPPTPTLPPSALPLH
PHAPLWDKSALHGGGPDSVSEFYTSELSKFIQPWVAPEWEKVKSLESTPNKKPPAVTLEA
DPVQEKLSDQSPAQHQTQRPPTPCSGTPGSQALQDLMELAEEGMTLTQYRYTTYTTAEDK
SARDNAVNDLPSSGFVPETNGNKTSKKTSVYVSKLASDLSSMVNNPQLSDVQLQVDSGDV
FFTHSFMLYTRCPLLANMVHDSGFGVQEEGMPVSQRVLLGNVLGEAVLALLQYLYTAHCP
LTHTLLPHIQELADRFGLVELQQQCKGYSGSVEENPRDESEGLFPVPEPHLGDREDPNLA
ESNFLELLQSMWQHGDSEEEDDFKETAGEERDLEEEQERGDGEKEDRVDEEELDEIYVFA
ATQRKMETMLETETEEEEGGANTSLGDEKKDEGKEKKETECLLEKSAGSCYSNKQGVDGT
EGAMVTSPTENPKNPNSETERVCLVPELDENRDSDASLDKSYDCLFSQSVGEYMEPSQTQ
ASCSQKQCHKPSSTLQQNTPTSFRPSCVNEVIDLSISPPPSSGVSGKTSFPIPGVSPVPH
EGEDTGKSPPRRDSSGCQGIENPPSPPESQSKQVELIVLSDSGDEMDVDNGDQNAATTTR
ALTPPSPFESSPELPQRTTSYACEVKDNSFKESGSQGHAGKQVDASKLMETDIEAKSDRS
EHCSPGVANESVFDGSAEVSWLIPATPVPSTRCSSAQTCISMRRTQLFPKSSSSSSSSSV
SESLKPASSASSSTSCLKEKPATLSKLHKSYRSPSKERQSIDTDRSPGYQRAPHHLRLSQ
VSSTDVSDGSNIGIIMGHPIQGVPKPSSSTPLHSDSSLQRQIPFCSPMVDDCEVGLRNCR
GSSRSFGRKGKVDLVSLQLSSPGKTPEKQQSGPLQQGCSSPAPNSPRYILPESLKESGND
GIERMELGENPNQSVEELVDIAVHSSCDLDDTRRGVREENPSQSVDEVVDIAGNSFCVMD
EPPIAFDDSWGLDGGVGSQKPCFSLRLDSSGGTVSPPGLEGKGTTSTSPLATGVCKKTPD
PSPGPFNHSLPDPDMWDDWEEEEVAPLPLSQRLTAPSAKRVAELKTPVASRKRNEGPLVP
ITPMPGFSDMDTPELKNRLNRFGVRPLPKKLMVRKLKEIHQYTHQLQSSESEEEVSGPRH
PPSASNSQSAPLAFKQPTAPPAVSPVKLPPSEDDEPLSASQNSNTSSTAESERSNPELCV
SEDDDSDSEGITASQAVVREKDKLLEVRQFILSDPKLYARVLQYQPLSLAELRSGLKAAG
IRLAAAKLLDFLDSQCITFSTAKQGQNASSRRKRRVKTTTSGAAAGRGRKKASKPSGGIA
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atgaacgactcggaccaggacttcacagacctctgctctcgtctcctcaaaagagtgagg
aagagaggagcaggagcatctggagatgaaaagagatcagcagtcaagggtgaggagcca
tcgtcctcctcttcccagagaaaccccccaaagaggagaaagaggactaaggatgctgct
caaactgaaactaagagtcagatcagtggcaggactcgggctgaagagtctggagatgtg
tcccagcgcgctcctgaagggtctggagatgtgtcccagcgcgctcctgaagggtctggc
acagggtcagtcacagaagcagtgatccggaggatgcagcggtttaagagagccagtcca
gagagactcctgcatgcagagaccaaccaaccctcaagcacagagtctgatggaaaccat
ccctccactgtcaggatccagcacacagaaactgtgggtgatgatgaagccctggctctt
cggcttcagcaggagttggattgtgaggctcgggccgctggagacgtggaagatgaagcg
ttgttcttctgccagctctgtcagaaagatctgtcagccatgagccccccgctgcgcact
cagcacatcaacagatgtctggatgccagtgagagcagcgctccttcagcatcccatcat
tcacaccctagaccacgggtcccagagtgtcccatttgtggaaagagttttaaatcagaa
aagagccgctctgtccacttaaagcgctgctcaaccaatttaggcgtgaaacctaatgat
cttctccaggctctgaggagacaggccgctgagagagcgagcgacaacaccaccgaccaa
tcaaagctaataggtagtgctacgacaactcagagggatggcatgcctttgaaaaagaga
tccaggaggaaagcccagaagctggatgaggacaccatggtggcgctggctctgtcccgc
tctatactcgagcaggaaatggagaaggagcgagagctggaggaggagagggagattctg
gctcagctctccagtcctcctgggacaggggctcctgtcttacagtggaaacctggtgca
ggtaagggtcgcgggaagagaaggaagggtgcgtctcctgtccacccaccacttctcctc
attcaggaccctcagacagcactgaaccgtctacaggagcgggtttcatctctcctgctt
cgttccagacccccctctccgccaacaccaaccctgcccccctccgcccttcctcttcat
ccccatgcccccctctgggacaaaagtgctcttcacggaggaggaccagattcagtttca
gagttctacacctctgaactaagcaaattcattcagccatgggttgcaccggagtgggaa
aaggtcaagtctcttgaatcaactccaaacaagaaacctccagctgtgaccttagaggct
gatccagtccaggaaaagctttctgatcagagcccagcacaacaccaaacccaacgacct
cccaccccttgttcgggtacaccaggctcccaggctctgcaggacctgatggagctcgca
gaggaaggcatgaccctcacccagtatagatacacaacatatacgaccgcagaggacaag
tcagctagggacaacgctgtgaatgaccttccctcaagtggatttgttccagagacaaat
ggcaacaagacgtctaagaaaacctcagtgtacgtttcaaagctggcatcagatctgagc
agcatggtgaacaaccctcaactcagtgatgtgcagttacaggtggacagtggggatgtg
ttcttcacacactcgtttatgctgtacacacgatgtcccctgctggccaatatggttcat
gactcagggtttggcgttcaggaggagggtatgcctgtctctcagagggtgttgttgggt
aatgtgcttggggaggcagtactggccctcctgcagtatctttacacagcacactgtcct
ctaacacacactctgctaccccacatacaggagctggctgatagatttggtttggttgag
ctgcagcagcagtgtaagggatactctggaagtgtagaggaaaacccaagagatgaatct
gaaggtttgtttccagtacctgagcctcatctcggggaccgagaagacccgaacttggca
gaaagcaacttcttggagctcctccagtcaatgtggcagcatggggacagcgaagaagag
gatgacttcaaagaaactgctggagaggaaagagacctggaagaggagcaagagcgagga
gacggagagaaagaggaccgggtggatgaggaagagcttgatgagatctatgtgtttgca
gcgacacaaaggaagatggagacaatgttggagactgagaccgaggaagaggagggaggt
gcaaatacgtcccttggagatgagaagaaggatgaagggaaggagaaaaaagagacagaa
tgccttttagagaaatctgccggcagttgctatagtaacaaacaaggtgtggatgggacg
gagggtgccatggtaacaagtccaacagaaaaccctaaaaaccccaattcagagactgag
agagtttgtttggttccagagctagatgaaaacagagactcggatgccagtctagacaaa
agttatgactgtttattctcccagtctgtaggggaatacatggaaccatcacagacgcaa
gcgtcctgctctcagaaacaatgtcacaagccatcaagcacactacaacaaaacacaccc
acctcttttcgcccttcatgtgtcaatgaggtgattgacctatctataagccctccaccg
agctcaggtgtgtcaggcaagacttccttccccatccctggagtgtctcctgttccacat
gagggtgaagatacgggtaagtctccaccaagaagagacagctcaggatgccagggaatt
gaaaaccctccttcccctccagaatctcaaagcaagcaggtagagctcattgttctctca
gattctggtgatgaaatggatgtagataatggtgaccaaaatgctgccaccactacacgt
gctttgactcctccgtctcctttcgaatcttccccagaacttcctcagaggaccacgagc
tatgcttgtgaagtcaaagacaacagtttcaaagaatctggatcccaaggccatgccggt
aaacaggtagatgcttccaagctgatggagactgatattgaagcaaagtctgaccgatca
gagcactgtagccctggggttgcgaatgaaagtgtgtttgatggctctgccgaggtttcc
tggctgattccagccactccggtaccatccacacgctgtagctctgcccagacctgcatc
agcatgcgccgaacccagctcttccccaagtcatcatcctcttcttcctcttcctccgtc
tcggagagtttgaaacctgctagctctgcttcttcaagcaccagctgcctaaaggagaaa
ccagcaaccttgtccaaattgcacaaatcatatcgaagtccctctaaagaacgtcagagc
attgatacagatcgctctccaggttaccagagagcacctcaccatctaagactatctcag
gtttcttctacagatgtgtctgatggctccaacattggcatcatcatgggacatccaatc
cagggtgtccccaagccctccagtagcactcctctccattcagactcttccttacaacgt
cagatcccgttttgctctcccatggttgacgactgtgaggttgggcttaggaattgtaga
ggttcttctagatccttcggtaggaaggggaaagttgacctagtgtctctacaactgagt
tctcctggtaaaacacctgagaagcagcagagtggccctcttcagcagggatgctccagt
ccagccccgaactctccaagatacattcttccagaaagtttgaaagagagtgggaacgat
gggatagaacgaatggaattgggagagaatccaaatcaaagtgttgaagaattggtggat
attgcggtacactcctcctgtgacctggatgatactagaagaggagtgagagaagagaat
ccaagtcaaagtgttgacgaagtggtcgatattgcaggaaactcattttgtgtcatggat
gagcctcctatagcgtttgatgactcttggggtttggatggaggggttggaagccagaag
ccctgctttagtctacgacttgacagcagcggaggtacagtcagtccaccaggtctcgag
ggtaaaggaacaacgtcaacgtctcctcttgcaactggagtttgtaaaaaaactcctgat
ccaagtccaggtccgtttaatcacagcctacctgaccctgacatgtgggatgattgggag
gaagaggaggtggctccccttcctctttctcagagattgacagctccgtctgccaagaga
gttgctgaactgaagactccagttgctagcagaaagaggaatgaaggaccactggtgccc
atcactcccatgccaggcttctctgatatggacacaccagagctcaaaaacagactcaac
aggttcggtgtgcgtccgctgcccaagaagctgatggttcggaagctgaaggagatccat
caatacacccaccagctgcagagctcagagtctgaggaggaggtctctggaccccgacac
cctcccagtgcctccaactcccagtctgctccgctcgcatttaagcagcctacagcgccc
cctgctgtctctcctgtgaaactgccaccaagtgaagacgatgaacctttatcagcctct
caaaactcaaatacatcctccactgcagagtcagagaggtcgaacccagagctgtgtgtg
tctgaagacgatgactcggacagtgaaggcatcacggcgtctcaggctgttgtgcgtgag
aaggacaaactcctcgaggttcgtcagttcatcctatccgaccccaaactgtacgcccga
gtgctgcagtaccagcctctctccctggcagagctacggtccggcttgaaagcggcaggc
atcaggttagctgctgctaaactactagacttcctggactctcagtgcattaccttcagt
acggccaaacaaggccagaatgcatcttcccgcaggaagcgacgtgtgaaaacgacaacc
agcggtgctgcagccggaagagggaggaaaaaagcatctaagcccagtggaggaatagca
tga
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integrated database retrieval system
