KEGG   Carassius auratus (goldfish): 113066371
Entry
113066371         CDS       T07313                                 
Name
(RefSeq) THO complex subunit 5 homolog
  KO
K13174  THO complex subunit 5
Organism
caua  Carassius auratus (goldfish)
Pathway
caua03013  Nucleocytoplasmic transport
caua03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:caua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113066371
  09122 Translation
   03013 Nucleocytoplasmic transport
    113066371
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:caua03019]
    113066371
   03041 Spliceosome [BR:caua03041]
    113066371
Messenger RNA biogenesis [BR:caua03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     113066371
Spliceosome [BR:caua03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    113066371
SSDB
Motif
Pfam: FmiP_Thoc5 DUF2542
Other DBs
NCBI-GeneID: 113066371
NCBI-ProteinID: XP_026094069
Ensembl: ENSCARG00000065771
UniProt: A0A6P6MC20
LinkDB
Position
50
AA seq 575 aa
MYQQHNPLKAKQRVDVLHLQLQNLLYEVMHLQKEIGKCLEFRSQHEEIELVSEEEFFQEA
PAEISRPHVTRDDQHQLTLARLDWELEQRKRLAEQYKMSLARKEKIQKAIEQKREYLSSL
QPGLQNIMQASLPVQEYLAIPFEHMQKQAEVARHLPPPLYVLLVQAGAYGQACDKNLSVS
IRGDVDEAKALSRPPEDSQDDESDSDTEEEQQNTKRRRATSGVQLDDKRKEMLRRHPLSL
CVDLKCKDGSVLHLFFYYLMNLNILTVKTKVSTTADLSGAVSAGELLNSESLLNCLYASD
HGKETPNPANRYQFDKVGITTFGDYVSDLGHPYVWVQKLGGLQFSSGGAQSGLTGSALSA
SHMERTMKLLRGRLQARLALHKQFSSLEHSIIPVSSECQHLFPAKVVSGLMRWTLMSHQE
FTELGFVQHVLKAGLVHETDLFFMAAVERGTARLLAAVVMNPRYPEVAPLFSLSLHWKGE
RSGRTDDNLRAMESEVNVFRSELQGPRPGLQLLTNQIQRLCVCLDVYLETESQVCDGSEG
PKEFPREKMCLRTARGPSRLKPFKYNHPQGFFSHR
NT seq 1728 nt   +upstreamnt  +downstreamnt
atgtaccaacaacacaatcccctgaaggcaaagcagcgagtggatgttcttcatctgcag
ctgcagaatctgttgtatgaggtcatgcacctgcagaaggagatcggcaaatgtctcgag
ttcaggtctcagcatgaggagatcgagctggtcagtgaagaggagttttttcaggaggct
ccggctgagatctcacgccctcatgtgacccgtgatgaccagcaccagctcacgctcgcc
cgcctggactgggaactagagcagaggaagagactggcggagcagtataagatgtctctg
gctagaaaggagaagatccagaaagccattgagcagaagagagaatatctgagcagcctt
cagcctggactgcaaaacatcatgcaggcgtctctcccagtgcaggagtatctggcgatc
ccgtttgagcacatgcagaagcaggccgaggtcgcccgtcacctgccgccccctctgtac
gtgctgttagtgcaggcgggtgcgtacggacaggcttgcgacaagaacctgtccgtgagc
atcaggggagatgtggatgaggccaaagctctctccaggcccccggaggactcacaagat
gatgaaagtgattcggacactgaagaggagcaacagaacacaaagcgccggcgcgcgact
tcaggtgttcagctggatgacaagcgtaaagagatgctgagacgccaccctctctctctc
tgcgtggacctcaagtgtaaagacggcagcgtcctgcatctgtttttctattatctcatg
aatctcaacatcctgacggtgaagaccaaggtttccacgactgcggatctgtccggagcc
gtcagcgctggagagctgctgaactctgagagtctgctgaactgtctttatgcgtccgat
cacggcaaagagacgcccaaccctgccaaccgctaccagtttgataaagtcgggatcact
acgtttggggattatgtgtcggatctcggacatccgtatgtttgggtgcagaaactgggc
ggcctgcagttctcctctggtggtgcacagtcgggactgacaggcagcgctctgagcgcc
agtcacatggagaggaccatgaaactactgcgaggaagactgcaggctcgactggcccta
cacaaacagttcagctcactggagcacagcatcatacccgtctccagcgagtgccaacat
ctgtttcctgctaaagtggtttctggtctcatgcgctggaccctgatgagccatcaggag
ttcactgagctgggcttcgtgcagcatgtgttgaaggcgggtctggtgcatgagaccgat
ctgttcttcatggcagctgtagagagaggaacagctcgtctgctggctgctgtggtgatg
aacccgcgttaccctgaggtcgcgccgctcttctctctctcgctgcactggaaaggagag
cgcagcgggcgcaccgatgataacctgcgggcgatggagagcgaggtgaacgtgttccgc
tccgagctgcaggggccacgtccgggtctccagctcctgaccaatcagatccagcgcttg
tgtgtgtgtctggatgtgtatctggagacggagagtcaagtgtgtgacgggtctgaggga
cccaaggagtttcctcgagagaagatgtgcttgcgcactgccaggggtccgagccgtctg
aagcccttcaagtacaaccatcctcagggcttcttcagtcaccgctga

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