Carassius auratus (goldfish): 113066897
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Entry
113066897 CDS
T07313
Name
(RefSeq) CCR4-NOT transcription complex subunit 4-like
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113066897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
caua03000
]
113066897
03019 Messenger RNA biogenesis [BR:
caua03019
]
113066897
04121 Ubiquitin system [BR:
caua04121
]
113066897
Enzymes [BR:
caua01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113066897
Transcription factors [BR:
caua03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
113066897
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113066897
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113066897
Ubiquitin system [BR:
caua04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
113066897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-C3HC4_2
zf-UDP
zf-RING_2
zf-CCCH_2
Nup35_RRM_2
DZR_2
RDD1
zf-C3HC4
Torus
Motif
Other DBs
NCBI-GeneID:
113066897
NCBI-ProteinID:
XP_026094799
Ensembl:
ENSCARG00000034017
UniProt:
A0A6P6ME32
LinkDB
All DBs
Position
50:complement(9177476..9186611)
Genome browser
AA seq
771 aa
AA seq
DB search
MSRSPELKEDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADAEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVI
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKSNPNFLQTSACGEKSKSKPNSTQRPSSTSKEGWPSLQNYGKMVNGLTTEHCKSP
SLLDCLTDSDHMTPDEPDPEQGTEQNTGLPPFPSALEPTSPIGKNSESINLGNGETISQT
SSSDSPSPPPGLTKPSLVVPISVAELTARSPFEGAAAESQSLFSDNSNFRHPNPIPSGLP
PFSSSPQGASDWPMTPEPQSLFTSDTIPVSSSTDWQAAFGFGSSAKQQQQDDDLGFDPFD
VTRKALADLIEKELSVQEHSPLSPNLSSHQTSLPNGQQRLPHLQHKGLYNSFSLPQHMAA
RHPWMGLPTRNNLTHLNHTASAAHSHFLDLSMPAQHHSTGLGGIPISENNGSVENLNVKE
WQDGLRALLPNININFGGLPNSTSSSSSSSTSSVNHIGVPVGSTGVSHSLSWDSTASWID
PAIITGIPASTGNSLDCLQDDNPPHWLKSLQALTEMDGPPSSSPLIQPPHTGLLDAAAQL
SLHRAAWAPYLPPPTLTPSQFHSPPPGFQTAFRPPAQTATDILQSAGIDRH
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcagccccgagctgaaagaagaccccatggagtgcccactgtgcatggaaccg
ctggagatcgacgacgtcaacttcttcccctgcacctgcggctaccagatctgccgcttc
tgctggcaccgcatccgcacagacgagaacggcctctgccctgcttgcagaaagccttac
ccggaggatccagcagtatacaaaccgctgtcacaagaggagatccagaggataaagaac
gagaagaagcagaagcagaatgaaaagaagcagaaggtgacggagaaccgcaagcacctg
gccagtgtccgtgtggtgcagcgcaacctcgtgttcgtcgtgggactttctcaaagactt
gcggatgcagaggttctaaagcgcccggaatatttcggaaagttcggcaaaatccataaa
gtggtcatcaataatagcacatcgtatgcaggttcacagggtcctagtgccagtgcctat
gtaacttacattcgttcagaggacgcccttagagcaatacagtgtgtgaacaatgtcata
gtggatggtagaacacttaaagcttctttaggtacaacaaagtactgcagttattttctc
aaaagcatgcagtgtcctaagccggactgcatgtatttacacgaactgggggatgaagcg
gctagtttcacaaaagaagaaatgcaggctgggaaacatcaagagtatgaacaaaaatta
ctccaagacctttacaaatcgaaccccaactttttacaaacctcagcctgtggagagaag
tcgaagagcaaacccaattccactcagagacccagtagtaccagtaaagaagggtggccc
tcattacagaactatgggaaaatggttaatggtttaaccacagagcattgcaagtcccct
tctcttttagactgcctaacagactcagaccacatgactccagatgaaccagaccctgaa
cagggaacagaacagaacacaggccttccacctttcccatcagccttagagcctaccagt
ccaattggcaaaaattcagaatctataaatctaggtaatggggaaaccatatcacagaca
tccagtagcgattccccttctcctccacctggccttactaaacccagcctcgttgtgcct
atcagcgtggccgaactcacagcgcgctcgcccttcgagggggcggcggcagagtctcag
tctcttttctcagacaacagcaatttcagacatcccaaccccatccccagcggcctgccc
cccttctccagttcaccacagggagcctctgactggcccatgactccagaaccacagagc
cttttcacctcagacactatcccagtgtcgtcctctactgattggcaggcggccttcggt
tttggctcttcagccaagcagcagcagcaggacgatgacctcggcttcgacccatttgac
gtcacacggaaggccctggccgacctcatagagaaagagctgtcagtccaggagcattcc
cccctctctcccaatctctcttcccaccagaccagcctccccaatggccaacagcgcctt
ccccacctccagcacaaaggcctctataactccttcagcctgccccaacacatggccgca
cgccacccctggatgggcctccccacccgcaataacctcacacacttgaaccacacggcc
tcagctgcgcacagccatttcttagacctgagcatgccggcccagcaccacagcaccggc
ctgggggggattcctatatcagaaaacaatggctctgtagaaaatctaaatgtgaaagag
tggcaggatggactgcgagcactcctaccaaatatcaacatcaactttggaggtctcccg
aactctacctcttcctcctcttcttcctccacttccagtgtgaaccacataggggtgcca
gtaggctccactggagtctcgcacagccttagctgggacagtacggccagttggatagat
cccgccatcatcacaggtatcccagcatccacaggcaacagtttggactgtctccaggat
gacaatccgccacactggctcaagtccctgcaggcactcacagagatggacggaccgccc
agctccagtccactcatacagcccccgcacaccggcctcctggacgctgcggcccaactc
tccttacacagagccgcctgggccccttacctccctcctcccacactaaccccaagtcag
ttccactccccacctccaggctttcagacagccttcagacccccagcgcagacggccaca
gacatcctacagagtgccggcattgaccgtcactaa
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