Carassius auratus (goldfish): 113068119
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Entry
113068119 CDS
T07313
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
caua
Carassius auratus (goldfish)
Pathway
caua04510
Focal adhesion
caua04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113068119
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113068119
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
caua00536
]
113068119
Glycosaminoglycan binding proteins [BR:
caua00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113068119
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
113068119
NCBI-ProteinID:
XP_026096512
Ensembl:
ENSCARG00000048371
UniProt:
A0A6P6MJ72
LinkDB
All DBs
Position
LG36F:complement(89374..143075)
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AA seq
1491 aa
AA seq
DB search
MILSADSRTLLLFVATLGAFLALVKCQEEDDQDPGSCTQDGQFYRDKDVWKPEPCRICVC
DTGVVLCDEIICEELKDCPKPEIPFGECCPVCAADQPPSTDRLPGAKGQKGEPGDITDVT
GPRGPAGPMGPPGEQGPRGDRGEKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNLAAQMAGGFDDKAGGAQMGVMQGPMGPMGPRGPPGQNGAPGPQGFQGNPGEAGEPGSS
GPMGPRGPPGPSGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGIKGHRGYSGLD
GAKGESGATGAKGEAGSPGESGAPGPMGPRGLPGERGRPGPSGATGARGNDGSPGAAGPP
GPVGTAGSPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGVPGSPGPSGISGNPGTDGLP
GAKGSGGAPGIAGASGFPGPRGPPGPQGATGPLGPKGQSGDPGLAGFKGEAGPKGEIGNA
GPQGAPGPAGEEGKRGPRGEPGALGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGAA
GVSGPKGASGDPGRPGEPGLPGARGLTGRPGDAGPQGKAGPSGAAGEDGRPGPPGPQGVR
GQPGVMGFPGPKGGSGEAGKSGDKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGGVGPQGLQ
GPRGLPGTPGTDGPKGGVGPGGTPGAQGPPGLQGMPGERGTSGIPGPKGDRGDNGDKGPE
GAPGKDGARGLTGPIGPTGPAGPNGEKGESGPAGPSGAAGTRGVPGDRGETGPPGPAGFA
GPPGADGQPGLKGDQGEGGQKGDAGAPGPQGSSGAPGPQGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGAAGPPGKDGPKGVRGDGGPPGRPGDAGLRGPAGTPGEK
GDPGEDGPHGPDGPAGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAAGGPGDR
GPPGPVGAPGLTGPAGEPGREGNPGSDGPPGRDGSAGIKGDRGDTGPTGAPGAPGGTGAP
GPVGPTGKQGDRGEAGPKGPAGSLGPAGARGMPGPQGPRGDKGEAGDSGERGQKGHRGFT
GLQGLPGPPGQPGDQGASGPAGPGGARGPPGPVGPAGKDGSNGLPGPIGPPGPRGRSGET
GPAGPPGNPGPPGLPGPPGPGIDLSAFAGLSHPEKGPESLQYMRADQAAEGNVQNDAEVD
ASLKSLNNQMENIRSPDGSKKSPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAMKVFCN
METGETCVYPKPANIPRKSWWTSKGSERKHVWFGEAMNGGFHFGYGDDNLAPNTASIQMT
FLRLLSTEASQNLTYHCKNSVAYMDESTGDLKRALLLQGSNDVQIRAEGNSRFTYTVLED
GCKKHTGQWSKTVIEYKSQKTSRLPIVDIAPMDIGGAHQEFGVDLGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgatcctgtcggcggattccaggactctactgctctttgtggcaactctaggcgcattt
ctggcccttgttaaatgccaagaggaggatgaccaagatccaggcagctgtactcaggat
ggccagttctacagggacaaggacgtgtggaagccggagccgtgtcgtatctgtgtgtgt
gacaccggcgtggtgctgtgtgacgagatcatctgcgaggagctgaaagactgtcccaaa
cctgagatcccatttggggagtgctgtcccgtctgtgctgctgaccagccgccctccact
gatcgcttgccaggtgctaagggacagaagggagaaccaggagatataacagatgtgacg
ggaccgaggggaccagctggtcctatgggacccccaggagaacaagggccccgaggagac
cgaggagagaagggggagaagggaagtccagggccccgtggcagagatggtgagccgggg
acccctggaaacccgggccctcctggaccccctgggccaaacggacccccaggcctcggt
gggaaccttgctgctcagatggccggagggtttgatgataaagctggaggagcacagatg
ggagtgatgcaaggacccatgggtccgatgggtcctcgaggaccaccaggccagaacgga
gctcctggcccacaaggatttcaaggcaaccctggagaagccggagagcccggctcatcc
ggcccaatgggtcctcgtggccccccgggtccctcaggaaaaccaggagatgatggagaa
gcaggcaaaccagggaaatctggtgaacgtggacctcccgggcctcagggagctcgtgga
ttcccaggaacaccaggtctacctggaatcaagggacacagaggttattcaggtctggat
ggtgctaaaggagagtccggagccactggggctaaaggtgaggcggggtctcctggagaa
agtggtgctcctggaccaatgggtccccgtggtttacctggtgaaagggggcgtccagga
ccatctggagctactggtgctcgtgggaatgatgggtcgcccggagctgctggtcctcct
ggtcccgtaggcacggctggctctcccggtttcccaggatcccccggtgctaagggtgaa
gcaggacctaccggagccagaggacccgagggagcacaaggaccccgtggagagtctgga
gtccccggatctccaggaccttctggaatctctggtaaccccgggactgatggcctcccc
ggagccaaaggatcagggggtgctcctggtatcgctggtgcttctggttttccaggccct
cggggccctcccggccctcagggagccactggacctctggggcccaagggacagtctggt
gatccgggtctcgcagggttcaagggtgaggccggccctaaaggagaaattggcaatgct
gggcctcaaggtgcccctggacctgctggagaggagggtaagcgaggacccagaggagag
ccgggtgctcttggacccgtcgggccgcccggagagaggggagctcctggtaatcgaggt
tttcctggacaagatggtctggctggtccaaagggtgctccgggcgagcggggagctgcg
ggggtgtcgggacccaagggagccagcggagatccgggccggcctggagaaccgggtctg
cctggtgcacggggtctgacaggacggccgggcgatgctggtccacagggtaaagctggt
ccgtctggtgctgctggtgaagacggtcggccaggacccccgggccctcagggtgttcgg
ggtcagccgggagtcatgggcttccctggacccaagggtggcagtggtgaagctgggaag
tctggagacaagggactcgctggagctcctggattgcgtggtctgccggggaaagacggt
gagacaggtgctgccggaccccctggacctgctggtcctgcaggagagagaggagagcag
ggtcagcccggaccctccggcttccagggtctgcccggacccccggggccccctggtgaa
ggaggtaaacctggcgatcagggtgttccaggagaagctggggccgcaggggccaccgga
ccacgcggtgagcggggtttcccaggagagagaggaggtgtggggccccagggcctccag
gggcctcgaggtcttccaggaactccaggaactgatgggcccaagggtggcgtcggcccg
ggggggactcctggtgctcaggggcccccaggactgcaggggatgcctggagagagaggg
acatctggcattcctggaccaaagggggacagaggggacaacggtgataaaggacctgaa
ggagctcctgggaaggatggtgcaagaggtttaacaggtccaatcggtcccactggacct
gcgggacccaacggtgaaaagggagagtctggacctgcaggaccgtctggagccgctggt
actcgtggtgttcctggtgacagaggagagactggtcctcctggtcctgctggtttcgct
ggtcctcctggtgcagatggacagcctggacttaagggagaccagggtgaaggtggacag
aagggtgatgctggtgcaccgggcccccaggggtcttctggagctccaggtcctcaggga
ccaactggtgtgtctggaccgaaaggggctcgcggtgctcaaggacctcctggtgccaca
ggtttccctggagccgctggtagagttggacctcctggtcccaatggtaacccgggtcca
gcaggtgctgctggtcctcctggtaaagacggtccaaagggtgtgcgtggtgacggtggt
cctcctggaagaccaggggatgctggcctgcgtgggccggctgggactcctggagagaag
ggagatcctggagaagatgggcctcacggtccggatgggcctgcaggtcctcagggtctg
gctggtcagcgtgggattgttggacttccaggacaacgtggtgaaagaggtttccctggc
ctgcctggaccctctggtgagcctggtaaacaaggagctgctggaggacctggagaccgt
ggaccccctggacctgtgggagcgccgggtctgaccggacctgctggggaacctgggaga
gagggcaatcctggatctgatggtcctcctggccgagatggttctgcaggaataaagggt
gaccgtggagacactggacccacgggtgctcctggtgctccgggtggaactggtgctcct
ggtccggtcggacccaccggcaaacagggagaccgaggagaggctggacccaaaggacct
gctggatctctggggcctgctggagctcgaggaatgcctggtccacaaggcccgcgcgga
gataagggtgaggctggggattcgggcgagagaggacagaagggacacagaggattcact
ggtcttcaaggtctgcctgggcctcctggccaacctggagaccaaggagcttctggacct
gctggacccggtggagcaagaggacccccaggccccgttggtccagctggaaaagatgga
tccaatggtttgcctggacccattggaccccctggacctcgcggccgttctggagagact
ggcccagctggccccccaggaaaccctggtccccctggtctccctggcccaccggggccc
ggcatcgatctgtctgctttcgctggtctgtctcatcctgagaagggtccggaatccctg
caatacatgagggcagaccaagccgccgaaggtaatgtccagaacgatgcagaggtggac
gccagtctgaagtctctcaacaatcagatggagaacatccgcagtcctgacggctccaag
aagagcccggcccgcacctgcagggacctgaagctctgccaccccgactggaagagcggt
gaatactggattgatcctaaccagggctgcactgttgatgctatgaaggtcttctgcaac
atggagactggcgagacctgcgtttatccaaaacctgccaatatcccacgcaagagctgg
tggacttccaaaggttcggagcgtaaacacgtttggtttggagaagccatgaatggtgga
ttccattttggctatggagacgacaacctggcacctaacacagcaagcattcagatgact
ttcctgagactgctttccacagaagcctcacagaacctgacctaccactgcaagaacagc
gtggcctacatggacgagtccaccggagacctgaagagagctctgctgctgcaggggtcc
aatgatgtgcagatcagagccgagggcaacagccgcttcacatacactgttctggaggat
ggctgcaagaaacacacaggacaatggagcaagactgtcatcgagtacaaatcccagaag
acttctcgcctgcccattgtggacatcgcaccgatggatattggaggagctcatcaggag
tttggagtggacctgggtgccgtctgtttcttgtaa
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