Carassius auratus (goldfish): 113068275
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Entry
113068275 CDS
T07313
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03015
mRNA surveillance pathway
caua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113068275
09123 Folding, sorting and degradation
03018 RNA degradation
113068275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113068275
03041 Spliceosome [BR:
caua03041
]
113068275
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113068275
mRNA cycle factors
Stress granule specific factors
113068275
Spliceosome [BR:
caua03041
]
Complex C
Other components
Complex C specific factors
113068275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_5
RRM_10
RRM_7
RBD_RDR6
RRM_3
RRM_occluded
YflT
HTH_58
Motif
Other DBs
NCBI-GeneID:
113068275
NCBI-ProteinID:
XP_026096731
Ensembl:
ENSCARG00000036750
UniProt:
A0A6P6MKZ9
LinkDB
All DBs
Position
LG44F:complement(1166061..1183324)
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AA seq
634 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDDKLKDVFSKYGTAMSIRVMTDENGKSRGFGFVSFER
HEDAQRAVDEMNGKELNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGIDDEHLRKEFSPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRA
AYYPASQLTQLRPSPRWTTQGVRPQHFQNMPGTMRPSAPRPQSFSTMRPASQVPRMMSTQ
RVAAQTMGPRPTAAAAAASAPPVRGVPQYKYTPSVRSPQQHMNTQPQVTMQQPAVHVQGQ
EPLTASMLAAALPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKEAAQKTVTNSSGVPSV
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcgcccagttacccgatggcctcgctgtatgtgggagacctgcaccag
gacgtgactgaagccatgctctacgagaagtttagcccggccggtgccatcctctccatc
cgggtgtgcagggacatgatcacgcgcaggtcgctcggatatgcctacgtcaacttccag
cagcccgcggacgctgaacgcgctctagacacgatgaactttgacgtgatcaagggtaga
cctgtccgcatcatgtggtctcaacgcgacccctcgctgaggaagagcggcgttggaaac
atcttcatcaagaacctggataagtctattgataataaagcactttatgacaccttctct
gcctttggcaacatcctgtcctgcaaggtggtttgtgacgagaatggctcaaagggctac
ggttttgtgcactttgagacgcaggaggccgccgaaagagccattgagaaaatgaacggc
atgttgctgaatgacagaaaagtgtttgtagggcgcttcaaatctcgcaaggagagggag
gctgagctcggcgcaagagccaaagaatttaccaatgtctacatcaaaaacttcggggaa
gatatggatgatgacaaactcaaggacgtcttcagcaaatatggtacggctatgagcatc
cgtgtcatgactgatgaaaatggaaagtccagaggatttggattcgtgagttttgagagg
cacgaagacgcccaaagggctgtggatgaaatgaacggcaaagaactcaacgggaagctc
atctatgtgggtcgtgctcagaagaaagtggagcggcaaactgagctcaagcgcaaattt
gaacagatgaagcaggaccgcatgactcgctaccagggtgtcaatctctacgtgaagaac
ttggacgatggcatcgatgatgagcatcttcgtaaagagttctctcccttcggtacaatc
accagtgccaaggtcatgatggacggcggtcgcagtaaaggcttcgggtttgtctgtttc
tcttcccctgaggaagccactaaagccgtgactgagatgaacggccgtattgtggccact
aagcctctgtatgtggctcttgctcagcgcaaagaggaacggcaggcccatctcaccaac
cagtacatgcagaggatggccagtgtccgcgcagtgccaaaccccgtgatcaacccctac
cagcctgcacctccatcaggatacttcatggctgccattccacaggcccagaacagagct
gcgtattaccctgccagtcagctcacccagctcagacccagtccccgctggaccacacag
ggcgtccggcctcagcacttccagaacatgccaggcacgatgcgcccatctgcccccaga
cctcagagcttcagcaccatgcgtcctgcgtctcaggtcccccggatgatgtccacgcag
cgtgttgctgctcagaccatgggtccacggcccacagcggctgcggctgcggcttctgct
cctccagtgcgaggcgtaccacagtacaaatacacccccagtgtccgcagcccccagcag
cacatgaacacacagcctcaggtgaccatgcagcagcctgctgtgcatgtgcaaggacag
gaaccgctgacggcctccatgctcgccgctgctctgccccaggaacagaagcagatgctg
ggtgagcgtctctttccacttatccagaacatgcatcccagtctggctggcaagatcacc
ggtatgctgctggaaatcgacaactcggagctcctccacatgctggagtctccagagtct
ctgcgctccaaggtcgatgaggcggtggccgtactccaggctcaccaggctaaagaagcc
gctcagaagaccgtgaccaactcttctggcgtgccgagcgtctag
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integrated database retrieval system
