Carassius auratus (goldfish): 113069170
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Entry
113069170 CDS
T07313
Symbol
col20a1
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
caua
Carassius auratus (goldfish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
VWA_2
FN3_Tor_3rd
NDNF
YjeF_N
Motif
Other DBs
NCBI-GeneID:
113069170
NCBI-ProteinID:
XP_026097976
Ensembl:
ENSCARG00000068868
UniProt:
A0A6P6MPL9
LinkDB
All DBs
Position
Unknown
AA seq
1572 aa
AA seq
DB search
MMAHSFPSVPSERTTLILVTVLLVLVSEVHSQGRLKLTVLSEDRLQIKWKEAEGPVQGYK
VRVRPITEVPQPELMLTTTRGRATVAGLDPRQEYLLQVMVLNGTLEKLMAKRRFTIDGLR
EEELIRSGNREQKKKTHPIGSGSGEVDDVTEALAALPTVLYREPVTTEPPVVPELEPEVD
RNTKEKKKKKDKNRSKTEDKNDQEENGGKSVREEVSITNKPRKTTPTQPVTAVSTRKPFE
CSAGAQADLVLLVDGSWSIGRTNFRKVRDFLEGLAVPFHIGPQGVQIALSQYSGDPRTEW
HLNNFTSREPLLEAIRNFRYKGGNTFTGQALIHALENNLKEEVGARPNTPQFLMLLTDGK
SQDDAIAAANRLKNAGVEIIAIGVKNADEAELRQVASEPLELNVYNVNDFPLLSKLVGRL
ARILCGKIEERVKAKKGMERPTQDPVLSYPSPTDLQYVGLGSREVRLRWTVPSKSPQQYR
VVYHTAEGQSLKEVVVNGTDSTVLLTGLSSQTQYHLSIFPVYENNVGSALRGTFTTLPLA
IPEALEVTASSSSSLRVRWQPAAGATQYMALYSALNDGEPDDAKEVKFGPAQTDVELVDL
MPSTDYSVTLYALYDEDPSDPITAIGTTFPLPSPLSLQFPMVSHSTLKVTWVPGAVDVPA
HRVIYSTNHGSDVKQVEVKGVNTVLLQNLSSLSRYLVSVQSLYEKGLSTPITANVTTLRV
PAPSDLRVTNFSGSDITVRWEAAADDVVSYLIKWISLSEGDLRQLTVDGESEGAILEEVK
EDKEYQISLSALYADGAQSEAVAIRYSTLSGGGPSSLSISEETAVSMLVSWVHPNAHVLQ
YRVSYTPLNGDARENTVSLPGIERRVLLQNLLPDTRYSVLVTAEYRNREGGSASAQGKTT
ASLRVSSVSVVRSDHSSICVSWRPVPAVSGYRIVIQALRDKQTKEEIVDAASSSHCFSEL
QPETVYRISVHSRVGTVEGAAVTILHPTATAPVRIQVPPRLHPIQREVCPETTVRNHVVK
GFDMMEAFGLTQRAHSTIEGVAAEPFIFSTLPSYTLYRDVQLTQSTGFIHPAGFSPEHTI
SIAFRLLQDSPREPFALWQLTDNDFQPKMGVVLDPEKKVLLYFSLDYRGEIQELTFDQPQ
VHSVFYGSFHKIHFSVSQVSVSLSVDCQRVGERPARPLGTLPTDGFEMLGKLVRTRGPNS
GSAAFQLQSFEIVCNTTWASEDNCCDLPSQRDEESCPAPAYACTCTTDVPGAPGDTGPPG
RPGPRGEKGDKGEVGQKGEVGPPGKPGPEGGFGTLGAAGPRGITVMGKVGPPGARGEKGD
IGRPGSQGLPGPPGQKGEEGMPGPKGTRGVEGNIGSPGITGPRGFQGLPGHPGPMGERGP
LGPLGPTGLPGSKGERGEKGEPQSLAMIYQLVTQACEKLVHNEVLKLDAFLNEMNRKPVP
IQEPVAPPGEPGIPGGRGPPGARGPQGRQGSRGESGKPGYPGEQGRRGMHGEKGSPGANA
VGPQGIKGFAGPPGEAKIGEPGPKGEAGNVGPPGIPGAPGQQGEMGPPGVCDSSGCYQGP
PAAEDPFPGYQP
NT seq
4719 nt
NT seq
+upstream
nt +downstream
nt
atgatggcccacagctttccttccgtcccctccgaacgaacgacactcatcctagtgacg
gttctcctggtgctggtttctgaagtccattcccaaggccgtctgaagctgactgttctg
tctgaagatcggctgcagatcaaatggaaggaggcagaagggccggtgcagggctataag
gtccgtgtgcggcccatcacagaggttcctcagccagagctgatgctcacaactacacgc
ggccgggccacggtggcaggcctggaccccagacaggagtatctcctccaagttatggtg
ctcaatgggacgctggagaaactcatggcaaaaagacgcttcactatcgatgggttgcgg
gaagaagagttgatccgcagcgggaacagagagcagaagaagaaaactcaccccattggc
tctggatctggagaggtggatgacgtgacggaggctctagcagcccttcccactgtgctc
taccgagaaccagtgactacagagcctcctgttgtacctgagcttgagccagaagttgac
agaaacaccaaagaaaagaaaaagaagaaagacaagaatcgatccaagaccgaggataaa
aacgatcaagaagaaaatggagggaagtcagtgagagaagaggtctccatcaccaacaaa
ccgagaaaaaccacgccaacccaacctgtcacagctgtttccacacgaaagccatttgaa
tgcagcgctggagctcaggctgatctggttcttctggtggatggatcctggagcatcggc
cgcacaaacttcaggaaagtgcgtgacttcctggagggtctggctgtcccctttcacatt
gggccgcagggtgtgcaaatagcattatctcagtacagtggagatccacggacagagtgg
catcttaataacttcacctctagagagccacttctggaggccatcaggaacttcagatac
aagggaggcaacactttcacaggtcaggctctcatacatgctcttgagaacaatctgaag
gaggaggtgggggcgcgacccaacaccccacagttcctgatgctgctgactgatgggaaa
tctcaagatgatgccattgctgcagctaacaggctgaagaatgccggcgtagagatcatt
gctattggtgtgaaaaatgcagatgaggcagagctgaggcaggtggcgtctgaaccgctg
gagctgaatgtgtataacgtgaatgattttcctctgctcagtaaactggtgggaagatta
gcacgcatcctctgtggcaagattgaagaacgtgttaaagcaaagaaaggaatggagcgt
cccactcaggacccagttctgtcctatcccagcccaactgatctgcagtatgtaggccta
gggtcgagagaggtgcgcctgcgttggaccgtccctagcaaaagtcctcagcagtacaga
gtggtgtaccacaccgctgaaggacagagtctgaaagaggtggtggtgaatggaacagac
tccacagttctgctgacaggactgtcctcacagacacaataccacctgtccatctttcct
gtctatgagaacaatgtgggctctgctctgagaggcaccttcaccactttaccattggcg
atacctgaggctctagaggtcaccgcttcctcctctagcagtctgcgggtgcgttggcag
ccggccgctggagccacacagtacatggccttatactctgcactcaacgatggagagcct
gatgatgccaaagaggtgaagtttggaccagctcagacggacgtggagttggtggatctg
atgccatccacagattattcagtcacgctttatgctctttatgatgaggaccccagtgac
ccaattacagccatcggcaccaccttcccactgccgtctcctctcagtttgcagtttccc
atggtcagtcacagcactctgaaggtcacgtgggtccctggagctgtcgatgttcctgca
caccgcgtcatctacagcaccaatcacggcagtgatgtcaagcaggtggaggtcaaaggt
gtgaacacagtgttgctgcagaatctgtcttccctctccaggtatctggtgtcagttcag
tctctctacgaaaagggcctgtccactcctatcacagccaatgtcactaccttaagagtc
ccagctccctcggatctgagagtcactaacttctccggcagtgacataaccgtgcgatgg
gaagcggcggcggatgacgtggtctcttatctcatcaaatggatctccctcagtgaagga
gacctcaggcagttgacagtagatggggagagtgagggggcgattttggaagaggttaag
gaagataaggagtatcagatttccctctctgcattatatgccgatggcgctcagagcgag
gctgtggctatacgatacagcaccttatctggaggtggtccgagcagtttgtccatctca
gaggagacagcagtcagtatgctggtcagctgggttcaccccaacgctcatgtgctgcag
taccgtgtgtcatacactccactcaatggggatgcaagggaaaacacagtgtcattgccc
ggcatcgagaggcgcgtcctgctgcagaatctcctgcctgacactcgttacagtgtgctg
gtgactgctgagtaccgcaatagagagggtggcagcgcctcagcccaggggaagaccaca
gccagtctacgagtgagcagcgtgagtgtggtgcggtctgaccactccagtatatgtgtg
tcctggaggcccgtgccagcggtcagtggctatcgcatagtcatccaggccctcagagat
aaacagactaaagaggaaatagtagatgctgctagcagcagtcactgtttctctgagctg
cagccggaaacggtctaccgcatcagtgtgcactcccgtgtgggaacagtagagggcgct
gcggtcacgatccttcaccctactgcaactgctccagtgagaattcaggttcctcctcgg
ctgcatcccatacaaagagaagtgtgtcctgagacgacggtcagaaatcatgtggttaaa
ggcttcgacatgatggaagcgttcggtcttactcagagagcacactctaccattgaaggt
gtggcagctgaacctttcatcttcagcaccttacccagttacaccctctacagagacgta
cagctgacccagagcacaggcttcattcatccggctggcttctctccagaacacaccatc
agcatagccttcaggctcttgcaggattcacccagggagcccttcgccctctggcagctc
acggacaatgacttccagcccaagatgggggtggtgctggaccctgagaagaaggttctg
ctgtatttcagtctggactacagaggagagatacaggaactgaccttcgaccagccacaa
gtccactcagttttctacggaagctttcataagatccatttttcggtcagtcaggtgagt
gtatctctgtctgtagactgccagcgggttggcgagaggcccgcacgccccctgggaact
ttgcccactgatggttttgagatgttgggcaaactagtgaggacacgtggacctaacagt
ggatctgcggcgttccagctgcagtcctttgagattgtgtgcaacactacttgggcatca
gaagacaactgctgtgatctgccctcacagagagacgaggagagctgtcctgcccctgct
tatgcatgcacctgcaccaccgacgtccctggagcacctggagacacagggccacctggg
agacctggccctcgtggggagaagggagacaaaggagaggtgggacaaaagggagaggtg
ggcccacctggtaaaccgggccctgagggcggctttggcacgcttggagctgctggtcca
cggggaataactgtaatgggcaaagtgggcccaccaggagcaagaggggaaaaaggagac
attggaaggcctgggagccagggtttaccagggccccctggtcaaaaaggtgaagagggc
atgcctggtcctaagggcaccagaggagtggagggtaacatcggtagcccaggaatcaca
ggcccaagaggcttccagggtttgcctggtcatccagggccaatgggagagagagggcca
ttaggtcccctagggcccaccggtcttcctggaagtaagggtgagagaggcgagaagggt
gagccacagtctcttgccatgatctaccaacttgttacacaggcctgcgaaaaacttgtg
cacaatgaagtgttgaagttggatgcttttctaaatgagatgaatcgaaagccagtgccc
atccaggaaccagtagcaccaccaggagagcctgggataccagggggaagggggccacct
ggagcccgaggccctcagggtcgacaaggaagcagaggagagtctgggaaaccagggtac
cctggtgagcagggacgcagagggatgcatggtgagaagggctctccaggagcaaatgcg
gtgggaccacaaggaataaaaggatttgcaggacctccgggtgaagctaaaataggggaa
ccaggtcccaaaggtgaggctggtaatgtaggaccaccgggtattccaggagctccaggt
cagcaaggagaaatgggtccccctggtgtatgcgacagcagtggatgttatcaaggaccc
ccggctgcagaggatccattccctggataccagccttga
DBGET
integrated database retrieval system
