Carassius auratus (goldfish): 113069942
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Entry
113069942 CDS
T07313
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
caua
Carassius auratus (goldfish)
Pathway
caua04510
Focal adhesion
caua04512
ECM-receptor interaction
caua04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113069942
04518 Integrin signaling
113069942
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113069942
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
caua00536
]
113069942
Glycosaminoglycan binding proteins [BR:
caua00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113069942
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
113069942
NCBI-ProteinID:
XP_026098877
Ensembl:
ENSCARG00000034780
UniProt:
A0A6P6MQR5
LinkDB
All DBs
Position
Unknown
AA seq
1491 aa
AA seq
DB search
MFRLVDSRTLLLLVATHCVLLSLVRCQQEDDQEDFGGCIQDGQQYADRAVWKPEACRVCV
CDAGAVLCDEVICEDLKDCTNPIIPPGECCPICPADTDEPIGSLGAKGQKGEPGDIADVV
GPRGPAGPMGPPGDQGTRGEKGPKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAAMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGPA
GALGPRGPPGPPGKPGSDGEAGKPGKAGERGPTGPQGARGFPGTPGLPGIKGHRGHPGLD
GAKGEAGAAGAKGEAGSNGESGTPGPMGPRGLPGERGRSGPSGSAGARGNDGLPGPAGSP
GPVGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGQRGEAGTPGSPGPAGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGSTGPLGPKGQSGDPGMPGFKGEAGPKGELGVV
GPQGAPGPSGEEGKRGPRGEPGSAGPNGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVP
GLTGPKGTTGDPGRSGESGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPLGAR
GQPGVMGFPGPKGINGEPGKPGEKGLVGRPGLRGLPGKDGETGAAGPPGPAGVAGERGEQ
GQPGPSGFQGLPGPTGAPGEPGKPGDQGIPGEGGAAGPTGPRGERGFPGERGSAGTQGAQ
GPRGLPGTPGTDGPKGAIGPAGAPGAQGTSGLQGMPGERGVVGIPGAKGDRGDTGEKGPE
GASGKDGSRGLTGPIGPPGPSGPNGAKGETGPIGSIGAPGARGAPGDRGEIGAPGPAGFA
GPPGADGQPGIKGELGEAGQKGEAGSLGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGAT
GFPGAAGRVGSPGPNGNPGPAGPVGPAGKDGPKGVRGDAGLPGRPGDAGLRGPPGAPGEK
GEVGPSGLPGADGPSGPSGLAGTRGIVGLPGQRGERGFPGLPGPSGEPGKQGSSGSAGDR
GPPGPVGPPGLSGPAGETGREGNPGSDGPPGRDGAAGVKGERGNTGPIGAPGAPGAPGAP
GSVGPVGKQGDRGENGPQGPAGPPGLAGARGIVGPQGPRGDKGEAGEAGERGLKGHRGFT
GLQGLPGPPGAPGDQGAAGPSGPSGAKGPAGPVGPAGKDGNNGQPGPIGPPGPRGRSGET
GPVGPPGNTGPPGPPGPPGPGIDMSAFAGFPRSEKGPDPMRYMRADEASSSLRQHDVEVD
ATLKTINSQIEDIRSPDGSRKNPARSCRDLKLCHPEWKSGDYWVDPNLGSSVDAIKVFCN
METGETCVKPITPKIPRKNWWSSKSKAQKHVWFGESMNGGFHFSYADSSQTSSTTSVQLN
FLRLLSTEATQTLTYHCKNSVAYMDQATGNLKKAILLQGSNDVEIRAEGNSRFTYGVLED
GCKKHTGQWAKTVIEYKTQKTSRLPIVDIAPMDIGGADQEFGLDVGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagattagtggattcacggactctcctgctacttgtagcaacgcattgcgttttg
ctatctcttgtaagatgtcaacaagaagatgaccaggaagactttgggggctgcatccaa
gatggccagcagtatgcagaccgtgcagtatggaagccagaagcgtgccgtgtctgtgtg
tgtgatgcaggggcagtgctatgtgacgaggtcatctgtgaggacctgaaagactgtacc
aatcccatcattccacctggagagtgctgtcccatctgcccagctgacaccgacgaacct
atcgggtcacttggtgcaaagggacagaaaggagaaccaggcgatattgcagatgttgta
ggaccaagaggacctgctggcccaatgggacccccaggagaccagggaacacgtggcgag
aaaggacctaagggtgagaagggtgctcccggaccaagggggagagatggcgagcctggt
acacctggaaacccaggaccccctggacccccaggacctaatggtccccctggacttgga
ggaaactttgctgctcagatggctggtggttttgatgagaaggcaggaggtgctgcgatg
ggtgtgatgcagggaccaatgggtccaatgggtccccgtggtcctccgggcccctctgga
gcacctggcccacaaggtttccaaggcaaccctggagaggctggtgaacctggccctgct
ggtgcccttggaccccgtggcccaccggggccccctggaaaacctggaagtgatggtgag
gctggcaaacctggtaaggctggtgagcgtggacccacagggcctcagggagcccgtgga
ttccctggaacccctggcctacctggcatcaagggacacagaggacacccgggtctggat
ggagctaaaggagaggctggtgctgcaggtgctaagggtgaagctggttctaatggtgag
agcggtactcctggaccaatgggtccacgtggtctgcccggtgagagaggtcgttctggg
ccttctggttctgctggtgcccgtggtaatgatggtctgcctggtcctgctggttctcct
ggccctgttggtcctgctggtgctccaggtttcccaggatcccctggttctaagggtgaa
gcaggtcccactggagctcgtggacctgagggtgcacaaggacaacgtggagaggccggt
acacctggatcacctggacccgccggtgcatctggtaaccctggtactgatggtattcct
ggtgccaaaggatctgctggtgctcctggcatcgctggtgcccctggtttcccaggaccc
cgtggcccgccaggacctcagggatctactggacctcttgggccaaaaggacaatctgga
gaccctggtatgccaggatttaaaggcgaggctggacccaagggagagcttggtgttgta
ggacctcagggtgcccctgggccatctggagaggaaggcaagagaggaccaagaggagag
cctggttctgccggaccaaatggacctcctggagaaagaggagctccaggtaaccgtgga
ttccctggtcaggatggtcttgctggagcaaagggagctcctggtgatcgtggtgtgcca
ggtttgaccgggccaaaaggaacaactggagatcctggtcgctcaggcgagtctggtctt
cctggagctagaggtctcactggacgccctggtgatgctggtcctcaaggaaaagttgga
ccaactggtgcccctggtgaagatggacgccctggtcctccagggcctctgggagctcgt
ggtcagcctggagtgatgggattccctggaccgaagggaatcaatggtgaacctggaaaa
cctggagagaaaggacttgttggacgccccggtcttagaggtttgcctggaaaagatgga
gagactggagctgctggtccacctggccctgccggtgtagctggtgagagaggagagcag
ggtcagcctggtccatctggcttccagggtcttccaggacccactggagcccctggagag
cctggtaaacctggtgaccagggtattcctggagagggtggtgctgctggtcccactgga
ccaagaggtgaacgtggtttccctggtgagagaggaagtgctggcactcagggtgcccag
ggaccaagaggacttccaggaactcccggaaccgatggacctaagggtgcaattggacca
gctggcgctccaggagctcagggcacttctggcctccagggcatgcctggtgagcgagga
gttgttggaatccctggagctaaaggtgacagaggtgacaccggtgagaaaggacctgaa
ggtgcttctggcaaagatggttcaagaggtttaactggtccaattggtccacctggtcct
tctggtcccaatggtgctaagggtgaaactggtcccattggctcaattggtgcccctggt
gctcgcggtgcccctggtgatcgtggtgagattggtgcacctggacctgctggatttgct
ggacctcctggagctgatggccagcctggaattaagggagagcttggtgaagcaggacag
aaaggtgaggctggatcccttggaccccaaggaccatcaggagcacccggcccagtgggc
ccaactggtgttacaggacctaagggagcacgcggagcccaaggagcccctggtgccact
ggtttcccaggtgctgcaggaagagtcggatcacctggccccaatggtaatcctggtcct
gctggccccgtaggtcctgctggtaaagatggtcctaagggagttcgtggtgatgccggt
ctcccaggcagaccaggagatgctggactgcgtggacctcctggtgctcctggagagaag
ggagaggttggaccgagtggtcttcctggtgctgatggtccttccggcccttctggtctt
gctggtacgcgtggtattgttggtttgcctggtcagcgtggtgaaagaggtttcccagga
cttccaggaccctctggtgagcctggtaaacagggatcttctggctctgctggtgatcgt
ggacctcctggccctgttggacctcctggattgagtggacctgctggagagactggacgt
gagggtaatcctggatctgacggtccacctggtagagatggtgctgctggtgtgaagggt
gagcgtggtaacactggcccgatcggtgctcctggagctcctggtgcacctggtgcccct
ggttccgttggtccagttggcaaacagggagacagaggagagaatggcccacaaggacct
gctggaccccctggactcgctggagctagaggcattgttggacctcaaggacctcgtggt
gataagggtgaggcaggagaagctggagaaagaggtctgaagggacacagaggattcacc
ggtctgcagggtctgcctggacctcctggtgctcctggagaccagggtgctgctggacct
tctggacctagtggcgctaaaggacctgcaggacctgttggaccagctggtaaggacggt
aataatggtcagcctggacccattggaccacctggacctcgtggacgctctggagagact
ggcccagttggtccacctggtaacactggaccccctggtcctcctggtccccctggccct
ggcattgacatgtctgccttcgctgggttccctcggtctgagaagggacccgatcctatg
cgttacatgcgtgctgacgaggcctccagctctctaagacaacatgatgtggaggtggac
gccacactgaagacaatcaacagccagatcgaggacatccgcagcccagatggctcccgc
aagaaccctgcacgctcctgcagagacctgaaactctgccaccctgaatggaagagcggt
gactactgggtggatcctaaccttggtagcagtgttgatgccatcaaagttttctgcaac
atggagaccggagagacctgtgtgaagcccatcactcccaaaatcccacgcaagaactgg
tggagcagcaagagcaaagcgcagaagcacgtgtggtttggagagagcatgaacggtgga
ttccacttcagctatgctgatagcagccagacttctagtactaccagcgtccagctgaac
ttcctcagactgctgtctactgaggccactcagaccctcacctaccactgcaagaacagt
gttgcttacatggaccaagccacaggcaacctgaagaaggccattctgctgcagggctcc
aatgatgtggagatcagagcagagggcaacagccgctttacatatggagtacttgaggat
ggctgcaagaagcacacaggtcagtgggccaagactgtgattgagtacaaaactcagaag
acatccaggctgcctatcgtggacattgctcccatggacatcggaggagcagatcaggag
tttggcctagacgttggtgcagtctgcttcttgtaa
DBGET
integrated database retrieval system
