Carassius auratus (goldfish): 113075089
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Entry
113075089 CDS
T07313
Name
(RefSeq) huntingtin-like isoform X1
KO
K04533
huntingtin
Organism
caua
Carassius auratus (goldfish)
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caua03019
]
113075089
04131 Membrane trafficking [BR:
caua04131
]
113075089
03029 Mitochondrial biogenesis [BR:
caua03029
]
113075089
Messenger RNA biogenesis [BR:
caua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
113075089
Membrane trafficking [BR:
caua04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
113075089
Mitochondrial biogenesis [BR:
caua03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
113075089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_2
HEAT_EF3_N
HEAT_GCN1
HEAT_ECM29
Vac14_Fab1_bd
Motif
Other DBs
NCBI-GeneID:
113075089
NCBI-ProteinID:
XP_026103637
Ensembl:
ENSCARG00000011444
UniProt:
A0A6P6N3Q4
LinkDB
All DBs
Position
1:14024049..14062604
Genome browser
AA seq
3119 aa
AA seq
DB search
MATMEKLMKAFESLKSFQQQQQGPLSAEELVQKQKKDLATTKKDRVTHCLTICENIVAQS
LRTSPEFQKLLGIAMEMFLLCSDDKESDVRMVADECLNKIIKALMDSNLPRLQLELYKEI
KKNAASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRITKRQEETVQETLSSSIPK
IMAALGHFANDGEIKMLLKAFVANLKSSSPTIRRTAASSAVSVCQHSRRPHYFYTWLLNV
LLSLVVPVDEDHSSHLILGVLLTLRYLMPLLQQQAPNTSLKGSFGLVRKEADITPAPEQL
IQVYEVTLHYTQHWDHNVVTASLELLQQVFRTPAPELLNALITRGKISHTSVFREETECR
ARSGSILELIAGGSTCSPLLLRKQKGKLLSGEEEGLEDDPERAEVPTGSFSASVGGDSSS
EAPSSSGVSSLGTSDIITEQPRSSQHALQPGDSVDLSASEQGVGPDTPDEEDEDMLSRSS
SGGAGVVSTSGDLVTDGNQMSMGAVLSSPPSDSSQTTTEGPDSAVTPSDCAELVLDGSDS
QYSGMQIGTLQDEEEEGAAPPPDKPPEPFSQSALALSKPHLLEGKGHNRQSSCSSVDRFI
PKEEVQEAADLDNKPSRIKGEIGHYTDPNEEPLVHCVRLLAASFLLTGQRNGLVPDNEVR
VSVKALAVSCVGAAAALLPESFFNKLYLQPLEGQEPDEQQYISDILQYIEHGDPQIRGAT
AIMCGALIQGIQLKTRYNTETWLSQIHSVTGNSVTLENVVPLLQRSLKDESSVTCKMACA
AVRTCIMALCSGSLSELGLQLLIDLLTLKDCSYWLVRTELLETLAEIDFRLVSFLERKTE
KLHKGEHHYTGLLRLQDRVLNEVVLHLLGDEDPRVRHVAANTISRLVPRLFFDCDQAQTD
PVVAIARDQSSVYLQLLMHETQPPSQFTTSTITRTYRGYNLDQSAPDVTVENNLSRVIAA
VSHALTSSTSRATTFGCCEALCLLSSTFPVCTWSTGWHCGYVCSSVFHLNRSSQYRSRGR
SFSLSQPAGSEDMRRSLTVGVASMVLSLISSAWFPLDLSAHQAALLLAGNLLAAVAPKCM
KSPWAGEEESNSAPSKVEEAWPALNDRSLVVMVEQLFSHLLKILNICAHVLEDTPPGHAA
KATLPSLGNTPSLSPIRRKGKEKEMTEPSTTPMSPKKGGEANTGRSVDSTATPAVNKSTT
LGSFYHLPPYLKLYDALRATHANYKVTLDLHNTNEKFGGFLRSALDVLSQLLEMATLHDI
GKCVEEILGYLKSCFSREPTMATVCVQQLLKSLFGTNLASQYEGASSHPCRSQGKALRLG
STSVRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQEQDASGWFDVMQKVSNQLRSSIT
NVTRHRGDKNAIHNHIRLFEPLVIKALKQYTTSTSVALQRQVLDLLTQLVQLRVNYCLLD
SDQVFIGFVLKQFEYIEVGQFRNSEEIVPNIFFFLVLLSYERYHSKQIISIPKIIQLCDG
IMASDRKAVTHAIPALQPIVHDLFVLRGSNKADAGKELDTQKEVVVSMLLRLIQHHQVLE
MFILVLQQCHKENEDKWKRLSRQIADIILPMIGKQQMHLDSHEALGVLNTLFETVAPSSL
RPVDMLLKSMFITPSTLASVGTVQLWVSGILAILRVLISQSTEDIILSRIQELSLSPYLL
SCPTIRRLCDDDSSPPEVPPTTMEDANGEPQHVPPEETFARFLLQLVGVMLDDIATKQVK
VDMSEQQHTFYCQQLGTLLMCLIHIFKSGMFRRITAAGSRLLKAEGGEGGHFYALEGLNS
LVLQLITTHPSLVLLWCQVLLIINYTNYTWWSEVHQTPRRHSLSSTKLLSPHSSGEEERP
EGKLAMFNREIVRRGALIFFCDYVCQNLHDSEHLTWLTVNHVSDLISLSHEPPVQDLISA
VHRNSAASGLFIQAIQSRCDNLSTPVMLKKTLQCLEGIHLSQSGALLMLYVDKLLNTPFR
VLARMVDTLACRRVEMLLAETLQNSIAQLPLEELDRIQQYLQTSGLAQRHQRFYSLLDRF
RATIADDTTSPAAPITSHPLDGDPPPPPENVEPNKEWYVALVKSQCCLRGEGALYETTEL
LTKLPQSDLNAIMTCKDFNLCLLASCLSVGVQRVCKDHGTVIFDTAQQVAFERLAGVIEL
LPSPHQPLLPSSQICGDYWQKLNQVYSEPGFYQTVLSLCGVVSQYLLSLSKLPSSLHIPK
DKETLITSFSTLAIEVVVWRLLQDQLPLSVDMQMSLACLCLALQQPAVWTHFASHTYLTH
TCSIVHCIQLLIHAVAVGPGDQLLRPERKTEQSEDQVDSAYKQLEWRCCEIMAELVEGLQ
SVLALGHHRNKNIPAFLTPTLRNVIISLARLPIVNSYTRIPSLVWKLGWSPRPSGEFGTA
LPEIPVEFLQEKDVFREFLYRINTLGWSSRTQFEETWATLLGVLVTQPITMDQEEETQQE
EDMERTQINVLAVQAITSLVLSAMTLPTAGNPAVSCPEQQPRNKILKALDTRFGRKLTVI
RGMVEREIQAMVSKRDNLATHFPYHAWDPVPSLSSSTAGTLISHEKLLLQINTEREMGNM
DYKLGQVSIHSVWLGNNITPLREEEWGEDEEDEADAPAPASPPISPINSRKHRAGVDIHS
CSQFLLELYSQWILPGSPSSKKTPVVLLSEVVRSLLAVSDLFTERNQFDMMFSTLTELQK
VHPPEDEILNQYLVPAICKAAAVLGMDKAIAEPVCRLLESTLRSTHLPSRIGALHGVLYV
LECDLLDDTARQLIPTVSEYLLSNLKAIAQCVNLHNQQHVLVMCAVAFYMMENYPLDVGS
EFNAGIIQLCCMMLSASEEATPSIIYHCILRGLERLLLSEQLSRVDTETLVKLSVERVNM
PSPHRAMAALGLMLTCMYTGVAGEEGKEKGSPGRPADADPTAPDSESVIVAMERVSVLFD
RIRKGFPSEARVVARILPQFLDDFFPLQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTL
HATGQSSMVRDWVLLSLSNFTQRTPVAMAMWSLSCFFVSASTSQWISALLPHVISRMGKS
DTVDISLFCLVAMDFYRHQIDEELDRRAFQSVFEMVASPGSPYYQLLCCLQSIHHDTSI
NT seq
9360 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaagctgatgaaagcgtttgagtcgctcaaatccttccagcagcag
cagcaaggcccgctgtcggccgaggagctcgtccagaaacaaaaaaaagaccttgctaca
accaaaaaggacagagtgactcattgcctgacgatatgtgaaaacatcgtggcacagtcg
ctgaggacatctccagagttccagaagcttctcggaatcgctatggaaatgttcttgttg
tgcagcgacgacaaagagtctgacgtcaggatggtggcagatgagtgcctcaacaaaatc
atcaaagcattgatggattccaacttgcctaggctccagctggaactgtacaaagaaatt
aaaaagaacgctgcctctcggagtctgcgggcagccttgtggaggtttgctgagctcgct
caccttgttcgtccacagaagtgcaggccgtatcttgtgaatctgcttccgtgtctgaca
cggatcacaaaacgtcaggaggagacggtgcaggaaactctttcttcttcaattcctaaa
atcatggctgccctgggtcacttcgccaatgatggggagatcaagatgctgttgaaggcc
tttgttgccaatctgaagtccagttctcccactattcggcgaacggcggccagctcggct
gtcagcgtgtgtcagcactcacgcagaccacactacttctacacctggctcctcaacgtg
ctgctcagtttggtagtgccagtggatgaggatcattccagtcacctgattctgggtgtg
ttactgacgctgcgctacctgatgcctcttcttcagcagcaggctcctaacaccagcctg
aagggcagctttggtcttgttcgtaaagaggcggacatcacccctgcacctgagcagctc
attcaggtctatgaagtgaccctgcactacacgcagcactgggatcataatgtggtcaca
gcgtctctggagcttctgcagcaagtgtttcgcactcctgcccctgagctcttgaacgca
ctcatcacgcgtggtaaaatatcacacaccagtgtctttagagaagagacagagtgccgt
gcacgaagtggcagcatcctcgaacttattgctggtgggtcaacatgcagtcctctcctc
ctcagaaagcagaaaggtaagctgttgtcaggtgaagaggagggtttggaagatgaccct
gaaagggcagaggtccccacaggatcattctctgcctcggttggtggcgacagctccagt
gaagctccctcctcatccggcgtttcgtctcttggcacatctgacatcatcacagagcag
ccacgctcctcccagcatgccttgcagccgggagactcagtggacctgagtgcgtcagag
cagggcgtagggcctgatactccagatgaggaagacgaggacatgctaagtcgcagctca
agcggtggcgccggggtcgtcagcacgtccggtgacttagtaaccgatgggaaccagatg
tcaatgggagcagtgttgtcgtcgccccctagtgacagttcccagacgactacagagggg
ccggactccgctgtgacgccttcagactgcgccgagctcgtgctggacggcagtgatagt
cagtactcagggatgcagatcggcacattgcaggatgaggaagaggagggtgcagctcca
ccgcctgataaacctccagagcctttctctcagtcagcactggctttaagtaagccccat
cttctggagggaaaaggtcacaacaggcaatcatcctgtagcagtgtggatcgattcata
ccaaaggaagaggtccaggaagccgcagatctcgacaacaagccatctaggattaaagga
gaaattggtcactatactgacccaaatgaagagcctctggtgcactgtgtgcggctgttg
gctgcctccttcctgctcaccggccaaagaaatgggctggttcctgataatgaggtccgt
gtgagcgtgaaggcattagccgttagctgtgtgggggcagcagcagctcttctacccgaa
tccttcttcaacaaactctacttgcagccattagaaggacaagagccagatgagcaacag
tacatcagtgatatactgcagtacattgaacatggggatcctcagatcagaggagccaca
gccatcatgtgtggggctttaatccaaggcatccagctcaagacacgctacaacacagag
acatggctgtcccagatccactctgtcacaggaaactctgtgacactcgaaaacgttgtg
cctctgctgcagcgaagtctaaaagatgaatcttcagtcacatgtaaaatggcctgtgct
gctgttaggacctgtatcatggcgttgtgcagtggcagtttaagtgaacttggcctgcag
ctgctcattgatttgctgaccctgaaggactgctcctattggctggttcgcactgagctt
ttggagacccttgctgagatcgattttcggttagtaagtttcttggaaagaaaaactgag
aagttgcacaaaggagagcatcactataccgggctgttgaggctccaggacagggttcta
aatgaagttgtgcttcatctactgggcgatgaagacccgcgtgtgagacatgtggcagca
aacaccatcagcaggctggtgcccaggttgttctttgactgtgaccaggctcagacagac
ccggttgtggccatagctcgagatcagagcagtgtgtacctgcagctgctaatgcacgag
acccagcctccatcacagttcactaccagcactattacacgaacataccgtggctacaat
ctggatcagagtgcaccggatgttacagtggagaacaacctatcccgggtcatcgctgcc
gtctcccacgccctcacctcctccacttccagagccaccacttttggctgttgtgaggct
ctgtgccttttgtccagcaccttcccagtgtgcacttggagcacaggctggcattgtggc
tatgtgtgctcctctgtctttcatctcaaccgctccagccagtaccgcagccgaggacgt
tcctttagtctctctcagcctgctggtagtgaggacatgcgccggtctctgacggtcggt
gtggccagtatggttttgtctctcatctcctctgcctggttccctcttgatctgtctgca
catcaggctgctctgctactggctggaaaccttctcgcggctgttgcaccaaagtgcatg
aagagcccgtgggcaggtgaggaggagtctaactccgccccttcgaaggtagaggaggcg
tggcctgctcttaatgaccgctctctagttgtaatggtggagcagctgttctcacacctg
ctgaagatccttaacatctgcgcccatgtgctggaagacacacccccaggccatgcggcc
aaggctactttaccctcattgggcaacactccatctctcagtccaatcagacgaaagggg
aaagagaaggagatgacggagccgagcaccacccccatgagcccaaagaaaggaggagaa
gccaacacaggcagatcggtggacagcacagcgacaccagccgttaacaaatccaccact
ctgggcagcttttatcacctgcctccttatctgaagctgtatgatgcactgagagctaca
catgctaactacaaagtcaccttagaccttcacaacactaatgagaagtttggaggtttc
ctgaggtcggcgcttgatgtcctttcacagctgcttgagatggccaccctgcatgatatt
ggcaaatgtgttgaagagatcctgggttacctcaagtcctgtttttcaagggaacccact
atggccactgtgtgtgttcagcagctgttgaagtcgttgtttgggaccaatcttgcatct
cagtatgagggggcgtcgtctcacccatgtcggtcccagggcaaggccctccggctcggc
tcgaccagtgtcagacccggcctctaccattactgtttcatggccccatacactcacttt
acccaggccctcgcagatgccagcctcagaaacatggtgcaagctgaacaagagcaggac
gcctctgggtggtttgatgtcatgcaaaaagtgtccaatcaactgaggtcgagtatcacc
aatgtcactcgccatcgaggagacaagaatgccattcataatcacatccgtttgtttgag
ccgctggtgataaaggcactgaagcagtacaccaccagcacctcagttgctctacaaaga
caggtgctggaccttctcacccagcttgtgcagctccgggtcaactactgtttgcttgat
tcagaccaggtattcattggtttcgtgctgaagcagtttgaatatattgaagtggggcag
ttcaggaactctgaagagattgtgcccaacattttctttttcctggttctgctgtcctat
gagcgttaccactccaaacagatcatcagcatcccaaagatcattcagctgtgtgatgga
atcatggccagcgacaggaaggcagtaacacacgcaatccctgcactgcagcctatagta
cacgacctctttgtgctgcgtggctccaataaagcagatgcggggaaggagctggacact
caaaaggaggtggtggtgtccatgctgctacgcctcatacaacaccatcaggtgctggag
atgtttattctagtcctacagcagtgccataaagagaacgaagataagtggaagaggctt
tcacgacagatcgctgacatcatcctaccaatgatcggcaaacagcaaatgcatctggac
tcccatgaggctttgggtgtgttaaacacactgttcgagactgtggctccctcctctctg
cggcctgtggacatgctactgaagagcatgttcatcacgccttctacactagcctcagtg
ggtacggtgcagttgtgggtgtctgggattctcgccatcctgcgcgtcctcatctcacag
tccacagaggacatcattctgtctcgtattcaggagctttctttgtcgccatacctcctt
tcctgtcccaccatccgtcggttgtgtgatgatgactcctcccctcccgaagttccgccc
accaccatggaagacgccaatggagagccacagcacgttccacctgaggaaacatttgct
aggttcttattgcagttagtgggggtgatgctggatgatatcgccactaaacaggtgaaa
gttgacatgagtgaacagcagcacacgttctactgtcagcagctgggcacactgctcatg
tgtttgatccacatcttcaaatcaggaatgttccgtcggatcacggcagcgggcagcagg
ctgctgaaggctgagggaggcgaagggggtcatttttatgctttggagggtttgaacagc
ctggtgctccagctcatcactacacacccatctctggtcctgctctggtgtcaggtcctt
ctcatcatcaactacaccaactacacctggtggtccgaggtgcatcagacccccaggagg
cacagtctgtccagcactaagctgctgagtccgcactcatctggagaggaggagaggccc
gaggggaagctggctatgtttaacagagagatcgtccgacgaggagcacttatcttcttc
tgtgactatgtgtgtcaaaacctgcatgactctgagcatctgacgtggctgacagtgaat
catgtgagtgatctgatcagtctttcccatgagcctccagtgcaggatctcatcagtgct
gtgcaccgaaattcagcagccagcggactcttcatacaggctatacaatcacgctgcgac
aacctttctactccggtaatgctgaagaagaccctgcagtgtctggagggcattcatcta
agtcagtctggggctctgctaatgctatacgtggacaagctactcaacacgccgttccgt
gtgctggctcgcatggtggacacactcgcctgcagacgtgtggagatgctgcttgccgag
accttgcagaatagtatcgctcagctgccgctggaggagctggacaggattcagcagtac
ctgcagaccagtggccttgcgcaaaggcatcagcggttctactccctgctggacaggttc
agagccactattgctgatgataccacgagccctgccgcccccattacctcacacccactg
gacggggacccgcctcctccccctgaaaatgtggaacccaataaagagtggtatgttgct
ctggtgaaatctcagtgttgtctgagaggtgaaggagctctatatgaaactacagagctt
ctgacgaaacttccccaatctgacctgaacgcaatcatgacctgcaaggactttaacttg
tgtctgctggcatcatgtctgagtgttggggtacagagggtgtgtaaggatcatgggacc
gttatatttgacaccgctcaacaggtggcctttgagcgattggctggtgtcattgagctc
ctcccctcccctcatcagcccctcctaccctcctcccaaatatgtggggactattggcag
aagcttaatcaagtctacagtgagcctgggttttatcagacggtgttgagtctgtgtggc
gtggtgagtcagtacctgctgtctctgtccaaactaccgtcctcactacacattcccaaa
gacaaagagactctcattacctccttcagcactctcgccatagaggtggtggtttggcgt
ttgctgcaggatcagctgcctctgagtgtggacatgcaaatgagtctggcgtgtctgtgt
ctggctctccagcagccggcggtgtggacacacttcgcctcacacacctacctcacacac
acctgctccatcgtccactgtatacagctcctcatccacgcagtcgctgttggtcctggt
gaccagcttctgaggccggagcggaaaacagagcagtcagaagaccaggtggactctgca
tataaacaacttgaatggcggtgttgtgagatcatggccgagctggttgaaggtctgcag
agtgtgctggctctgggtcaccatagaaacaagaacattccagcgttccttacacctact
ctacggaatgtcatcatcagcctcgccaggctgcccattgtgaacagctacacacgaatc
ccatcactggtctggaagctgggctggtcccccaggccgagtggagaatttggcacagca
ttgccagagatccctgtagagttcctgcaggagaaagacgtcttcagagagttcctctac
cgcattaacactctgggctggagcagtcggacacagtttgaggagacgtgggccactctg
ttgggagtgctggtcactcagccaatcacgatggaccaagaagaggaaacccagcaagag
gaggatatggagaggactcagatcaatgtactggcggttcaggccatcacctctctggtg
ctgagtgcaatgactctgcccacagcaggaaatccagccgtcagctgccctgaacagcaa
ccccgcaacaaaatccttaaagctctggacaccaggtttggtcgcaagctcactgtgatt
agaggaatggttgagcgtgagattcaggccatggtgtcaaagagagacaacctcgccaca
cacttcccctatcatgcctgggaccccgtgccatccttatcatcctcaacggcaggcacc
ctcatcagccatgagaaactcctgctgcagattaacaccgagagggagatgggcaacatg
gactacaaactgggtcaagtgtcaattcactccgtgtggttgggaaataacatcacccct
ctaagggaggaggagtggggtgaggatgaggaagatgaggcagatgccccagcacctgcc
tccccaccaatatcgccgatcaactccaggaagcaccgtgcaggggttgacatccattcc
tgctctcagttccttctggagctctacagtcagtggatcctccctggcagccccagtagc
aagaagactcctgttgtactcctcagtgaggtggtcagatcgctgctggcagtgtctgat
ctcttcactgagaggaatcagtttgatatgatgttctccactctgactgagctgcagaag
gtccatccaccagaagatgagattctcaaccagtacctcgtgccagctatctgcaaagca
gccgcagtgcttggcatggataaagccattgcagagcctgtgtgccgtctgttggagagc
accttgcgcagcactcatctgcccagtcgaattggcgctcttcacggagttctgtacgtg
ctggagtgcgacctactggacgatacggcacgccagcttatacccaccgtcagtgaatac
ctgctctctaaccttaaagctatagcacaatgtgtgaatctacacaaccaacagcatgtg
ttggtgatgtgcgcggtggccttctacatgatggagaactaccccctggatgtagggtcc
gagttcaatgccgggatcattcagttgtgctgtatgatgctgtctgctagtgaggaggcc
acaccatccatcatctaccactgcattctgcgaggtctggagcggttgcttctgtctgag
cagttgtcgcgtgtggacaccgagacgctagtcaagctgagcgttgagcgtgtgaacatg
cccagcccacaccgtgccatggctgccctgggtctcatgctcacctgcatgtacacaggt
gtggctggagaggaagggaaggagaagggaagtcctgggcgtcctgctgatgcagacccc
acagctcctgacagcgagtcggtcattgtcgcaatggagcgcgtatccgtcctgtttgac
aggattcgcaaaggcttcccgagtgaggcgcgtgtggtagcccggatccttcctcagttc
ctggatgactttttcccactgcaggacgtcatgaacaaagtcattggggagttcctgtcc
aatcagcagccttatccgcaattcatggctacagtggtatacaaggtatttcagactctt
catgcaactgggcagtcctctatggtacgtgactgggtgctactctcgctgtcaaacttc
acacagaggacgcctgtcgccatggcaatgtggagcttgtcttgtttctttgtcagtgcc
tcgaccagtcagtggatctctgccctcctgcctcatgtcatcagtcgaatggggaagtct
gacacagtggacattagcctcttttgtctggtagctatggatttctaccgacaccagatt
gatgaagagttagaccgcagagccttccagtcggtctttgagatggtggcttcacctggt
agtccgtattaccaattactgtgctgtttgcagagcattcaccatgacacgtcaatataa
DBGET
integrated database retrieval system
