Carassius auratus (goldfish): 113075750
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Entry
113075750 CDS
T07313
Name
(RefSeq) LOW QUALITY PROTEIN: probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
caua
Carassius auratus (goldfish)
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caua03021
]
113075750
Enzymes [BR:
caua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
113075750
5.6.2.5 RNA 5'-3' helicase
113075750
Transcription machinery [BR:
caua03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113075750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
UvrD-helicase
AAA_30
Viral_helicase1
AAA_22
AAA_16
AAA_10
nSTAND3
Helicase_RecD
GLF
Motif
Other DBs
NCBI-GeneID:
113075750
NCBI-ProteinID:
XP_026104229
Ensembl:
ENSCARG00000062502
UniProt:
A0A6P6N7M9
LinkDB
All DBs
Position
Unknown
AA seq
2043 aa
AA seq
DB search
ICMLLTQLSAEAMDSLFMGQFNIPLCILRTMDGLKNEDNPASDPFWPALHCFMVILDRLG
SKIWGQVDPNTAFQTITGAASYVCEIRNIRQKTMGGMFKVEPEYDDNMVTCSQMVYNCYA
SEKPNHASGLSSNSGVSSNYMIYEDMQSLVTVLDSEMGQSMRVYGSTFLWFIPFVRSIME
LSELNASYISEVIHYLCDKIRENRHMLTGQTIVYDKVSELFTRILIQIVELHSTEGRMGI
LSRCAHKWVGEIVLCIIQSDETHGPPDRMGGIHGVSSTSYNLGIVRKLPASGGGIGAIIA
DCVTLIRRLLKDGKRRSVPSAARFLSLLNNQLRGVTNKRWDLTCSESDELQKCLLRVVRS
MPERSTSSPSVVPPPCGPSVEATTNTVISRNSVATLNQQPYEHQEAGPSRAGDESGFIKK
ESIWNYKNWDLDEDFCSGLEVIIKAKKETLDPVSISQLSPVVQLERVKPDINKSLKSAKE
ACGFGADEDEEDDDEPLDIKLVRLTKSIHNVESGDSEDNNNAVEKIGNRFMGASKENVEC
STIVISDDDSDNDERPNDILRSPKVCVLSESPGRDYDDLSESQVFEFETQQYVASAWDDS
AFDASDLTKKPKSDQLLKPQVDETPREASPSSSETELIPDEDIERACQQAEDKIREQQQP
QEPVDSFATSLSKASSTAESWDKFAKPKPVKSTKTTPSEKKQPKKPLIIDALAQKSRRHS
WKRSSTSQDIEEPSSSTTLCSPSSSSCSSVSSPYFSAPSSSNTPKIVPPKKVRKVAEPES
TAERLGLKKKERKAFDLSQRSLDGVAKLRCHGQKVQVEPQQKKRRVNRANKSSPQNHIVK
SNKKLLGSQDIQFFRLSREKQANQRPATGVITSTLAPKPADINQPGEMHLPKPTVASSEA
GDIFPCPQPDSSFQRDNENAASGTNSAGDGAGNNKCVEPEYFQASETADANMENEKPAQE
DDEEWMFLTQMEPTDMELCSQMEQFEEENGEELFLTQRDPIDMDIDTDSESDAPGPTLTP
KPIQTPIGGNDDHLFVKPGMSPISQKKAKPSTTKIYTPSSRSASLVLEMEKEAKPPPAAN
VAKAKIPDXPPAVPPPKTFQPLHPPQPTMQLPSRHAPYAPELATSSRRSSNSEPPSYKVY
QRPEAPVYNPGPTVDQSQTFDLSILTQAILKWEYRMLDNYKSFGSPHDLCQLPLQKVPVQ
FSSYLEYFNTLYPLLLINAFEEMASEWLKEGRVKLNLTFQGIEYSNRTASASFTANISQE
TDMKQLYPKEDDLVLLWLPDNTGSYAHDEPNFHETHPHFGYVSRSNVSNRSSGSRPILNL
TIQTRSNISSGNSQPVLCEVIGSLISIFREFRALCLLRNGPMLRPLLAPHASFFMHTVDS
PPDLDLPEFNRDQARAIACGLAMVKRTEKTPKFLLIHGPPGTGKSKTIGGLLYKLLSLGI
NSAAPSGNIHAKSRRTRVLLCAPSNAAIDSLMKKVILIFKEKCRNINAPQGNCGDINLVR
LGSERTISKSLKPFSLDHQTKARAQRAQQTAEADIHKRKEQLEQIIENLSQRCAKANKDS
FEFKTLMEEKMQRLKEREGLGRQIKECRMRRQESQAVVLQNAHVICCTLSTSGSIVLENA
FRRLGHEPFSCVIIDEASQSKESETLIPMLYRSPAVILVGDPNQLPPTVVSQKAKEFGFD
QSLMARLCKSLYMSNPQLSPIVLLGVQYRMHPDICEFPSKYIYNSALKDDCETAQKRCSL
SWPFKPYKVFDVTDGIEKKERDSFSNHKEVKLVLLLLKLLGEKQSVRVGVITPYNAQKQR
ILEAIRGSGIDNKHLQVEVNTVDGFQGREMDCIIVSCVRASSETGSIGFVGNRQRMNVTI
TRAKFSLFILGHLRTLREQSDWGALIEDASIRKTIIKTMQKQFERDVRQILKPEREPPTR
SLSYPPIGIPSAVTSPVTYAPVETDPAPAPHLQHDTSSAPMPRLIPLECPNNPRMSDRPT
DPRFAERRPIREQGPDRDGRGLPESRRSTNRANSYEADSRSTGQSSRYSSRHSSSSPSRR
HRR
NT seq
6134 nt
NT seq
+upstream
nt +downstream
nt
gtatctgtatgttactaacgcagctcagtgcggaggcaatggactctctgttcatgggac
agtttaacatcccgctttgcatactccgcacaatggatgggttgaaaaatgaggataacc
cagcttctgacccattctggccagccctccactgttttatggtaattctggaccgacttg
gttctaagatctggggtcaggttgaccctaatacagcgttccagacaatcaccggagctg
ccagctatgtttgcgaaattagaaacatccggcaaaagaccatgggcggtatgtttaaag
tggaacctgaatatgatgacaatatggtgacctgcagtcagatggtgtacaactgttatg
cctcagaaaaaccaaaccatgcatctggtttgtcgtccaacagtggggtttcaagcaact
atatgatctatgaggatatgcagtccctggtcacagtgcttgattctgaaatgggccaga
gcatgcgtgtatacggaagcacttttctgtggttcattccttttgttcgttccataatgg
aactttcagagctcaatgcttcctatattagtgaagtcatccactatctttgtgataaga
tacgagaaaatcggcacatgctaaccggacagacgattgtgtacgataaagtgtcagagt
tattcactcgtatccttattcaaattgttgagctacactctactgaaggacggatgggta
tactttctcgctgtgcccacaagtgggttggggagattgtcttgtgcatcatccaatcag
atgaaacacatggaccaccagacaggatgggtgggattcacggagtcagttcaacctcat
acaaccttgggatagttcgaaaactgcctgcatctggaggaggcattggtgctataattg
ctgactgcgtgacactgattcgacggctactgaaagacgggaaaaggagatctgtcccaa
gcgcggcccgctttttgagtttgctgaacaatcagttgcgtggagttacaaacaaacgat
gggatttaacatgttctgaatctgatgagcttcagaagtgtttgttaagagttgtccggt
caatgccagaaagatctacttcttcaccttctgttgttccaccaccatgtggaccatcag
tggaggcaactacaaacactgttatttccagaaattccgtggcaaccctaaatcagcaac
catatgagcaccaagaggcaggtccaagcagagcaggagatgaatctggttttatcaaaa
aggagtcaatttggaattataaaaattgggatttggatgaggatttctgcagcggtcttg
aggttatcataaaggctaagaaggaaacccttgacccagtgtcaatttcacagctgagtc
cagttgttcagttggaacgcgttaaaccagatataaacaagtccttaaaatcagctaaag
aggcatgtggttttggagctgatgaggatgaggaggatgacgatgaaccccttgatatca
aactggttcgtctgacaaaatcaatccacaatgttgaatctggcgactccgaagataaca
ataatgctgttgaaaaaattggtaacaggttcatgggtgcttcaaaggaaaatgtggagt
gtagtaccattgttatctctgatgatgattctgataatgatgaaaggccaaatgacatcc
tgaggtctccaaaagtttgtgtcctgtctgagagccccggtcgtgattatgatgatctca
gtgaatcacaggtctttgagtttgagacccagcaatatgtggcatctgcctgggatgatt
ctgcttttgatgcatcagacttgacgaagaagcccaaatcagaccaactactcaaaccac
aggtggatgaaactcctcgtgaagcatctccatcaagttcagagaccgaacttattccag
atgaagacattgagagggcttgtcagcaagcagaagataagatcagagaacagcagcagc
cacaagagccagtggattcatttgcaacttcactgtccaaagcatccagtactgcagaga
gctgggataaatttgccaaaccaaaaccggttaaaagcacaaaaacaactccatctgaaa
agaaacagcctaaaaagccattgataattgatgcccttgctcaaaaaagcagacgccact
cctggaaacgcagctcaacatctcaggatatagaggaaccatcctcttcaactactctat
gctcaccttcctcttcatcctgcagctctgtttcctctccttatttttctgcccccagtt
caagtaatacccctaagatagttcccccaaagaaggtgcgtaaggttgctgagccagaat
ccacagcagagcgtttgggattaaaaaagaaggagaggaaagcatttgatctttctcaac
gctcgcttgatggtgttgctaaactgaggtgccatggtcagaaagtgcaggtagaaccac
aacagaagaaaaggcgagtgaatcgagccaataagtcttctccacagaatcatatcgtaa
aaagcaacaagaaacttctgggatcacaagatattcagtttttcaggctaagtcgtgaga
agcaggcaaatcagaggccagcaacaggagtcatcacatcaacattagctcccaaaccag
cagatatcaatcagccaggtgaaatgcacttaccgaaacctacagttgcaagcagcgagg
ctggtgatatctttccttgtcctcagccagattccagctttcagcgggataatgaaaatg
ctgcatcaggaaccaattctgcaggagatggggctggaaataataagtgtgtagaaccgg
agtacttccaagccagtgagactgctgatgccaacatggaaaacgaaaaacctgctcagg
aggatgatgaagaatggatgttcctcactcagatggaacccaccgacatggaactgtgct
ctcaaatggagcagtttgaggaagaaaatggtgaagaactctttcttacccagagagacc
ctatagacatggacattgatacagacagtgagtcagatgccccagggccaaccttgaccc
ctaaacctattcagactcctattggtggaaatgatgatcatttgtttgtgaagcctggca
tgtcacctatatctcagaaaaaggccaaaccttctaccacaaaaatatacacccccagct
cccgcagtgcctcgcttgtccttgaaatggaaaaagaagccaagcctcctcctgctgcga
atgttgctaaagcgaagattcccgacntgcccccagcagtgccacctccgaaaacatttc
aacctctccatcctccacaacccacaatgcaacttccttcacgacacgctccatatgctc
ctgagttggccactagttctagaagaagctccaactcagagccaccatcttacaaggtat
accaaagacccgaggctccagtttacaatccaggacccacagtggatcaaagccagacgt
ttgacctttcaatcttgacccaagcaatccttaaatgggaatataggatgcttgacaatt
acaaatcatttgggagtccacatgatctgtgccaactaccgctgcagaaagtgccagttc
agttttctagctacttggagtacttcaacaccttgtaccccctgctgctaattaatgcat
ttgaagagatggcgagtgaatggctcaaagagggcagagtcaagcttaacctaacattcc
agggaatagaatacagcaatcgcacagctagtgccagcttcacagcaaacatttctcagg
aaactgacatgaaacaactgtacccaaaagaagatgacctggtgctactttggttgcctg
acaacactgggtcatatgcccatgatgaaccaaatttccatgaaacgcatcctcattttg
gttatgtgtctcggtccaatgtgtccaacagaagttcaggttccaggccaattctcaact
tgacgattcagacacgtagtaatatatcttcagggaattcccaacctgtgctctgtgaag
ttatcggatcattgatcagcatattccgggagttccgtgcactgtgtttgctgcggaatg
gaccaatgttgcgacctctacttgctccacatgcatcttttttcatgcacactgtggaca
gcccaccggacctggatttaccagagttcaacagggaccaagcaagagcaatagcttgtg
gtcttgccatggtaaagagaacagagaagaccccaaaatttctccttattcatggtcctc
caggaaccgggaagagtaaaacaattggtggcctgttgtacaaactactatctttgggta
ttaacagtgctgctccttcggggaacattcatgccaagtctcgacggacacgagttcttc
tctgtgctccctctaatgctgccattgacagtctgatgaagaaggtcattttgatattta
aagagaaatgccgaaacatcaacgcacctcaaggtaactgcggggatataaacctggtac
gattgggaagtgaaagaaccatctcgaagtcattaaaacctttcagcctcgaccaccaga
ctaaagctagagcacagcgagctcagcaaactgcagaagctgacatacacaaacgcaagg
agcaactggaacaaatcattgaaaatctctcccagcgatgtgcaaaagccaataaggatt
ctttcgagttcaagacgttgatggaggagaagatgcagcgcctgaaagagagagaaggac
tgggtcggcagattaaagagtgtcgcatgaggcgacaggagagtcaagctgttgtgctgc
aaaacgctcatgtgatctgctgcacgctcagcaccagtggaagtattgtcctcgagaatg
ccttccgtcgcctcggacatgaaccattcagctgcgtcatcattgatgaggctagtcagt
ctaaagaatctgagactctgatccccatgctgtaccgaagtcctgctgtaatcctcgtcg
gtgatcccaaccagcttccaccaacagttgtctctcagaaagcgaaggagtttggcttcg
accagtctcttatggcaaggttatgcaaaagtctttatatgtcaaacccgcaactctctc
caatcgtcctgctcggcgtgcagtaccgcatgcacccggacatctgcgaattcccctcca
agtacatctacaacagcgctctcaaggacgactgtgagacggctcagaagcgctgttccc
tcagctggcccttcaagccctacaaagtgttcgacgtgacggatgggatagagaagaagg
agagagattcattttccaatcacaaagaagtcaagctggtcttgctgctgttgaagctgc
tgggtgagaagcagtcagtgcgagtgggcgtcatcacaccctacaacgcccagaaacaac
gcatactggaagccatcaggggttcaggcatcgacaacaagcatcttcaggttgaagtca
atacagtggatggctttcagggcagagaaatggactgcatcattgtgtcttgtgtgagag
ccagcagtgaaacaggctccattgggtttgttggaaatcggcaaagaatgaatgtaacca
tcaccagagccaaatttagtctctttattctgggacatttacgcacactcagggaacaaa
gtgattggggagcattgattgaggacgctagtatacgtaaaacgatcatcaaaactatgc
aaaaacaatttgaaagagatgtcaggcagattcttaaaccagaacgagagccgccgaccc
gcagtctctcttatcccccaattgggataccgagcgctgtgacctcacctgtgacatatg
cacctgtggaaacagaccccgcccctgcgccccaccttcaacatgatacgagcagtgcgc
caatgccacggctaatacccttggaatgccctaataacccacggatgagcgacaggccca
cagacccacgttttgcagagcgccggccaatcagagaacagggaccagacagagatgggc
ggggcttaccagagtcccgccgttctacaaacagggctaattcgtatgaagccgattcta
gaagtacaggccagtcttccagatactcttcaagacacagcagctcttcaccatcaagac
gacacaggagataa
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integrated database retrieval system
