Carassius auratus (goldfish): 113078816
Help
Entry
113078816 CDS
T07313
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
caua
Carassius auratus (goldfish)
Pathway
caua04382
Cornified envelope formation
caua04510
Focal adhesion
caua04512
ECM-receptor interaction
caua04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113078816
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113078816
09142 Cell motility
04820 Cytoskeleton in muscle cells
113078816
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
113078816
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
caua04147
]
113078816
00536 Glycosaminoglycan binding proteins [BR:
caua00536
]
113078816
Exosome [BR:
caua04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113078816
Glycosaminoglycan binding proteins [BR:
caua00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113078816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113078816
NCBI-ProteinID:
XP_026106913
UniProt:
A0A6P6NED5
LinkDB
All DBs
Position
Unknown
AA seq
1639 aa
AA seq
DB search
MGDSGDKTERCDGRDCSVCQCFPPKGERGNPGVLGQQGPQGPRGLPGPRGLNGEKGRSGP
VGLPGVSGPKGDQGFQGEKGHAGLDGVPGHPGPGGPPGFPGKDGCNGARGKLGLNGEIGR
PGLPGAKGLPGLKGAKGDTSTSLTFFPGTPGDDGLSGISGPQGLKGLCGPGGPPGKMGPD
GFMGLQGLSGRRGPPGDPGRLLPGPKGDEGDHGPQGEPGPFEYVEPNPEDCVKGDKGKKG
PRGICGVPGPEGCEGPPGEEGQKGIIGLSGPRGLPGCPGRRSSPGPKGPCGDIGLPGLCG
IQGPKGCSGDPGPKGNPECYYNHVIGPPGDRGLPCAAGLPGDRGMLGIPGPPGDSGACIT
GPEGECGLPGLNGLKGEKGDPGNLCGSLLNGEPGKPGCPGPKGQCGNPGNSVCGYYCLTG
ERGETGQGGNRGPPGLKGVQGRKGPDGGCACDPLGDLPGDPGPPGPPGVPGCPGKTGCQG
PPGDVGPTGKMGVRGVTGPRGFIGVRGAKGEKGDVMMMCRKGDKGDAGSVGLCGKPGCSG
RKGADGKIGAPGDPGPMGDCIVGPPGNRGCPGAAGVRGVRGPAGLPGPNMMGSVGRRGQQ
GCQGPQGQTGPPGPKGIQGDTLPCGPGIRGAPGCKGMPGCKGEKGKLGNPGCIGQNGPCG
PKGEIGDPGDCRVTGLTGPVGCSGDPGDTGPDGQSVCGSPGTPGNRGCQGLKGCSGDCIT
GAPGPKGPSGIQGCQGPKGVPGPTGPNGLQGACGVPGFPGRKGENGMDGTPGAPGCPGGR
PEHCDKGQAGPPGNTGPPGFTGPRGCPGEKGSPGEPGSSCIGAKGECGMLGTPGNQGCAG
LQGPPGFEGDCGNPGCPGPKGLPGCPGQDGCPGNKGRTGPLGPPGPKGIRGFSGYPGCPG
VNGTKGQKGCIGPPGPLGDITPVLLKGQVGPPGPVGENGFCGERGNKGDPGPPGQPGCAG
HNGPPGSECGQCGPAGIPGLCGVPGARGQRGPKGIVGFPGDNGDQGDPGLCGLPGTPGFP
GFDGPKGDKGEFICEPGLIGERGPCGDRGVSAPPGGEGDCGDPGPQGPRGCSGPPGPPGN
NGLTGPPGVVGPPGPCGRHGPEGPPGCPGPPGPKGNPGRIGLRGPPGPPGLHGLDGLEGY
NGEKGCRGQGINGCRGNKGLTGDKGTPGDPGLRGPSQTGVRGPNGMCGCQGDPGPMGPPG
CRGPECKTPKHGPCGERGCAGPDGPPGPKGEQGEAGCVFTVSGDCGDPGCKGDSGCKGER
GSCGPSGLPGCEGLKGPKGERGQCGLMGLPGLPGTRGDCGPRGLCGPKGDIGDPGLKGDP
GTVIIPPTPCPLLPGPPGAPGAPGPVGEAGENGPNGTEGPNGIKGQKGDSGISGPTGPEG
PQGLSGNPGEIGEKGAKGSQGPQGSVGDEGPPGPSSSGFLLVIHSQSEIVPTCPSGLTEL
WNGYSLLYLEAQERAHIQDLGQAGSCLRMFSTLPFSCCNMNGCDYASRNDKSYWLSTNAS
IPSNSTLRGMEIQPHISRCVVCEVSSPAITLHSQDGNTPECPFNWRTLWVGYSFLMHTGS
GDEGGGPSLASTGSCLQEFHSQPFVECQGPLGTCQYSPTFYSFWLTRVNMEPFNSDPYST
VLTEENQLDSISTCSVCVT
NT seq
4920 nt
NT seq
+upstream
nt +downstream
nt
atgggggacagtggagacaagacagaaaggtgtgatggtcgagactgcagcgtctgccag
tgtttcccccccaaaggagagagggggaatcctggtgtgttaggtcagcagggcccacag
gggcctcggggtttgcctggcccccgaggacttaatggtgaaaagggtcgaagtggaccc
gtaggattgcctggggtctccggcccgaaaggagaccagggatttcaaggagaaaaaggc
catgctggattagatggagtgcctggtcatccagggcctggtggtcctcctgggtttcca
gggaaggatggctgtaacggagccagagggaaattagggttgaatggtgagataggacga
cccgggctcccaggagccaagggactacctgggttaaaaggagccaaaggagacacgtct
acaagtttaactttctttcctggtacacctggtgatgatggactttctggcatctctgga
ccacaaggacttaaaggtttatgtggcccaggaggtcctccaggaaaaatgggacctgat
ggatttatgggtttacaaggattatcaggtcgaagaggcccaccgggagacccaggaaga
ttactaccaggaccgaaaggagatgagggcgaccacggtcctcagggggaaccaggtcca
tttgaatatgtggagcctaacccagaagactgtgtaaaaggcgataaggggaaaaaggga
ccgagaggaatttgtggagtacctgggccagagggttgtgaagggcctccaggagaagaa
ggacagaaaggcataattgggctctctggtcccagaggccttcctggatgtccaggcaga
agaagctctccaggacctaagggtccatgtggggatattggtcttcctggtctatgtggc
atccaagggccaaagggctgctcaggtgaccccggacctaaaggaaacccagagtgctat
tacaaccatgtgataggaccacctggagatcgtgggcttccttgtgcagcgggacttcct
ggagatcgagggatgctgggtatacctggaccccctggtgattcaggagcatgtataaca
ggtccagagggtgaatgtggtctgccaggtcttaatggactcaaaggagaaaaaggtgac
ccaggaaacctatgcgggtcactcttaaatggggaacctggaaaaccgggctgccctgga
cccaaaggacaatgtggaaatcctgggaattctgtttgtggttactactgcctgactggt
gaacgtggagaaactggacagggtggaaatagagggcctcctggattaaaaggtgttcag
ggaagaaaaggtcctgatgggggatgtgcatgtgacccacttggtgatttaccaggagat
ccgggccctccaggccctcctggtgtccctggttgtcctgggaaaacaggctgtcagggt
cctcctggcgatgttggacccactggaaagatgggtgtgagaggtgtaactggtcccaga
ggcttcataggtgtcagaggggctaaaggagagaaaggagatgtgatgatgatgtgcaga
aagggggataaaggtgatgcaggatctgttggattatgtggaaaaccaggatgtagtggg
aggaaaggagctgatgggaagattggtgcccctggagatcctggacctatgggagattgt
attgttggtccaccgggcaacagggggtgtccaggggctgctggtgtgagaggtgtaaga
ggtccagctggtcttcctggcccgaatatgatggggtcagttgggcgacgggggcaacaa
gggtgccaaggacctcaaggccagacgggacctcctggtcccaaaggcattcaaggtgat
acactgccctgtggacctggcatacgtggagcccctggttgcaaagggatgcctggttgt
aaaggtgagaaaggtaagcttggaaatccaggatgcatcggacaaaatggaccatgtggt
cccaagggagagattggagaccctggtgactgtagggtaacaggacttacaggtccagtt
ggatgttcaggagatcctggtgacactggcccagatggccagagtgtttgtggctcacct
ggcacacctggcaatcgtggatgccagggtctgaaagggtgttctggtgactgtattaca
ggggctccaggaccgaaagggccctctggaattcagggatgtcagggccctaaaggtgtc
cctggacctactggaccaaatggattgcaaggtgcttgtggagttcctggttttcctggt
agaaaaggggaaaacggaatggatggtacaccaggagcccctggttgcccaggtgggaga
ccagagcactgtgacaaaggacaagctggtccacctggtaatacaggaccaccaggcttc
actggaccaagagggtgccctggagagaaaggatcgcccggggagccaggatcttcatgc
attggagccaaaggagaatgtggtatgcttggtaccccgggcaatcaaggttgtgcaggc
cttcagggacctccaggattcgaaggggactgtggaaaccctggatgccctggaccaaag
ggtttgcctggatgtcctggtcaagatggctgtcctggtaacaaagggaggactggccct
ttagggcctcctggaccgaaaggcatcaggggtttcagcggatatccaggttgcccaggg
gtaaacggaaccaagggccagaaaggatgcattggacctccaggacctctgggagacata
actccagtgctattgaaaggccaggtagggccacctggacctgttggagagaatggtttc
tgtggagaaaggggtaataagggggacccaggtccgcctggacaacctgggtgtgcggga
cataatggacctcctgggtctgaatgtggccagtgtggaccggcaggcattcctgggctg
tgcggtgtgcctggtgcacgtgggcagcgtgggccaaagggaattgtgggattcccaggt
gataatggtgatcagggtgatcctggattgtgtggtctgccaggaacccctggtttccct
gggtttgatggtcctaaaggagacaaaggtgaatttatttgtgagccaggactaataggt
gagagagggccatgtggagacagaggcgtgtcagctcctcctggtggtgaaggagactgc
ggtgaccctggcccacaagggcctaggggatgctctggtccacctggaccacctgggaac
aatggcctgactggacctccaggagtcgttgggcccccaggtccttgtggaagacatggt
ccagaaggtccccctggatgtccaggtcccccgggccctaagggaaacccaggaaggatt
ggccttagaggacctccggggcccccaggactccatggactggatgggctggaggggtac
aacggtgaaaaggggtgtcgaggacagggtataaacggttgtaggggcaataaagggctg
actggagacaagggcactccaggagacccagggttgcgaggcccatcacaaacaggtgtt
cgaggtcccaatggaatgtgtgggtgccaaggagaccctggtccaatgggtcctccaggc
tgtcgtggtccagaatgtaagactcctaaacatggaccatgtggagaacggggttgtgct
gggccagatggacctccagggcccaagggagagcaaggagaggcaggctgtgtgttcaca
gtgagcggggattgtggtgacccaggttgtaaaggagactcagggtgtaaaggagaaaga
ggatcgtgtgggcccagtggcctcccagggtgcgagggactaaaaggtccaaaaggtgaa
agaggacaatgtggacttatgggccttccaggactccctggcaccagaggcgattgtggc
ccccgaggactctgtggtccaaaaggagacataggggacccagggcttaaaggagaccct
gggactgtcataattccccctactccttgtccccttcttccgggtcctcctggtgctcct
ggtgcacctggcccggttggtgaagctggtgaaaatggacctaatggtactgagggtcca
aatggtattaagggacaaaaaggagattctgggatttctggacctactgggccagaagga
ccacagggactatctggaaaccctggagagatcggcgagaaaggagcaaaaggatctcag
ggaccacaaggatcagttggtgatgagggtcctcctggaccgtcttcctctggcttcctt
ttggtgatacacagccagtctgagattgtgcccacttgtccttcgggtctaacagagtta
tggaacggctacagtctactatatctggaggctcaggaaagagcacacatacaagacctg
ggccaagcaggttcctgtttacgtatgttcagcacactaccattctcctgctgtaatatg
aatggatgtgattatgccagccgcaatgacaaatcttattggctgtctacaaatgcctcc
attccctctaattccaccctgagggggatggaaattcaaccacacatcagcaggtgtgtg
gtgtgtgaggtgtcatcgccagccattacattacacagtcaagacgggaatacaccagag
tgtccattcaattggagaacactctgggtcggatattcatttcttatgcatacaggatca
ggggacgagggaggtggaccgtctctggcatcaacaggaagctgtttgcaggaattccac
agtcagccgtttgtggagtgccaaggtccgcttggcacgtgccaatattcccccaccttc
tacagtttctggctgactagagtgaacatggagccctttaattctgatccttacagtact
gttctcactgaagaaaaccagctcgatagcatcagcacatgcagcgtctgcgtgacttaa
DBGET
integrated database retrieval system
